Array 1 620349-622301 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049053.1 Streptococcus thermophilus strain ST64987 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 620349 36 100.0 30 .................................... TTTGAAAGGACATTTAAGAGCATGTTAGAC 620415 36 100.0 30 .................................... ATGGATTTTATGGACCTGATAGATTGGTAT 620481 36 100.0 30 .................................... GATGGTGTCAATCTTAACGATGTTGAATTT 620547 36 100.0 30 .................................... TCCCATGTCTTGCCAAGCCACTTACCAGCA 620613 36 100.0 30 .................................... AAACCAAAAAGAAAATCGGTGATGTACATC 620679 36 100.0 30 .................................... CCCCTCAAGGTCATTTCAGTGTCTTGGTTA 620745 36 100.0 30 .................................... GAGCAAGCAGAGGGTAGCTTCACAATCTTA 620811 36 100.0 30 .................................... CCTCAAATCTTAGAGCTGGACTAAAGTAGA 620877 36 100.0 30 .................................... TCGTCGAAGAAAAAGTCAGAGTAGAGCTAA 620943 36 100.0 30 .................................... ATCACATCCTAGTGACAATCTGTTCGCTTC 621009 36 100.0 29 .................................... GTCAGCGATTGCTTTTGGCAATGAGCCAA 621074 36 100.0 30 .................................... ATCACCATGATGACATCATCGGAGGAACTG 621140 36 100.0 30 .................................... TACTGATGATAAACAACTTGAAATTGTTGT 621206 36 100.0 30 .................................... CTGAGTTTGTGCGCTGTTTCATTTTCGACA 621272 36 100.0 30 .................................... AGAGGTTATCAGTTACTCATCAATTCATTT 621338 36 100.0 31 .................................... TAAGCTACTTGATTTAGATAATGAGCGTACA 621405 36 100.0 30 .................................... TTACTTAATTGGATTTGGTCAAACAAACAA 621471 36 100.0 30 .................................... AGTCACCTCAAAGCTTAAAATTGGGCTGAA 621537 36 100.0 30 .................................... TATTCAGGTATGACTTATGATATGGTAGCG 621603 36 100.0 30 .................................... TGGCATACGGAAAAAGCAGATACAATCGAT 621669 36 100.0 30 .................................... AATGACAATATACGAGTTTTTAAATGAGGT 621735 36 100.0 30 .................................... AAGAAGCAGCAAGATGCATCAAACACCGCA 621801 36 100.0 31 .................................... TGCATTTGTAACCATGACTTCTTCTTCGGTA 621868 36 100.0 31 .................................... TTAAATGGGTTATGCTGTTCAATATGCGTCC 621935 36 100.0 30 .................................... TTTCTCCTTCGATGATTGTTCTTCCATCTT 622001 36 100.0 31 .................................... TTGGGAAATTGGGAGAAGATTACAACACGTC 622068 36 100.0 30 .................................... CGTTAACACCGTTGTATTGTTCTTTAGTCA 622134 36 100.0 30 .................................... GTTACTGAATACAGTCCACCTACATATTTA 622200 36 100.0 30 .................................... CAATCAACAGGTCTTACCGACAAGAATGGC 622266 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 30 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGATTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTAAATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTCGGTCTGCGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACCTGGCTAGCTCCTTGGTCATCTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 858941-859784 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049053.1 Streptococcus thermophilus strain ST64987 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 858941 36 100.0 39 .................................... TTAATTTTAGTATCACCATCAATGTTTGCATAACCAGTA 859016 36 100.0 37 .................................... AACATATTATTTATCTCCATATATTTTTTTCTTTTTG 859089 36 100.0 34 .................................... GCGTTACCGTAGACCTCTGCGTTACCACTTACCT 859159 36 100.0 37 .................................... CTCCATTAAAAAAATCAGTAAAAATGCCACATTTCCA 859232 36 100.0 39 .................................... AAGTCAAAGTCTTCTATATATGTTGAGTTGGTGACCATT 859307 36 100.0 41 .................................... TGTTCCAATTTAGTAGCATTAATGAATCTGTACTTATCTAA 859384 36 100.0 41 .................................... ACTAGTAGATTTTTCATATTAATCTACCTCCTTTCTATAAT 859461 36 100.0 34 .................................... TTGTCCTTGAAAAGCAATTCACCTTTGTTAAATT 859531 36 100.0 36 .................................... GCTTTCTAGCTCGCTATAATTACCCATTCCTAGAAA 859603 36 97.2 38 .......G............................ TCTTTCGACTTAGAATCGTATTCAAATTTCATGTTTTT 859677 36 100.0 36 .................................... TTAACGAAGTTGTCATCAATCATTACTCCTTGCCTG 859749 36 83.3 0 ..............................TTTTTT | ========== ====== ====== ====== ==================================== ========================================= ================== 12 36 98.4 38 GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTATTTCGAGGTCGACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : TGAAAATTTTGAAAACAATATTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGGGTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGATGACCACGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGGCAGATAAACTGTTAGAGATTTTCAATAGCGAGGAAAATCAAACCTATTTTTCAATTATTTTTGAG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 1340091-1338801 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049053.1 Streptococcus thermophilus strain ST64987 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1340090 36 100.0 30 .................................... CGCTTATCAAAGTACACCCAACAAGTATAC 1340024 36 100.0 30 .................................... CCCAGATTCTTGATTTAAAACTCCAATTGG 1339958 36 100.0 30 .................................... ATTGACCTATTCAATGTATGGTTCACGCAA 1339892 36 100.0 30 .................................... GGCACTATCTGCATAAGCAAAATGGACATA 1339826 36 100.0 30 .................................... CCGTGGTGAGCAAGGCTTGCAAGGACCGAA 1339760 36 100.0 30 .................................... TTTAGCAACAGAAAGCCCACCGAGCGAACA 1339694 36 100.0 30 .................................... ACCAGTCCACAATATATTAATTGAATTTGA 1339628 36 100.0 30 .................................... AACGGTTAATTTCGATATTCCAAAGAGTTA 1339562 36 100.0 30 .................................... TCTGCCGCCCCGGGAAACCCAAGTGGTCAG 1339496 36 100.0 30 .................................... CAAACCATAACACTGACGACAATTCCAAGA 1339430 36 100.0 30 .................................... TAGAGGTAATGACGGACTACCAGGTAAGGA 1339364 36 100.0 30 .................................... AGTTGTGACTTCGCTTTCGCTTGGCATCCG 1339298 36 100.0 30 .................................... TTTCCAATGCCGTGATGGTTTTCGTCAGGA 1339232 36 100.0 30 .................................... CAAGGTATACGGCATCCCTGATAACGTAGT 1339166 36 100.0 30 .................................... ATTCCATTACAGTTGTTATGGTAAAAATGA 1339100 36 100.0 30 .................................... ATTGACCTATTCAATGTATGGGTCACGTAA 1339034 36 100.0 30 .................................... TCTTAAAAATTGAATATTAACGAAGTACAT 1338968 36 100.0 30 .................................... TAACAAGCTGTACGACTTGTACTATCAGGC 1338902 36 100.0 30 .................................... GGGTGCTGATATGTCTACCTCTGGTGGAGC 1338836 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTAAAATATGAGAAGGAACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //