Array 1 279865-279445 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBCQ010000004.1 Clostridium botulinum strain CDC-CR2 4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 279864 28 100.0 38 ............................ TTTTATTAAAAGTTTTTGAAATTAAAAGTCCATCTTGA 279798 28 100.0 39 ............................ CAAGGGTATTTAAAAGCAATATAGAAGTAATATTATAGA 279731 28 100.0 36 ............................ ATATGATTTCTTAGTAGATATGCAAACGGGAGATGC 279667 28 100.0 36 ............................ TAATCAAGATTTAACCATTCTTTAGCTTCTCGTAGT 279603 28 92.9 36 .............AG............. TTGGAAAGCTTACTAGATTTCTTACCTATATCGGGT 279539 28 92.9 37 ......A............C........ AAGTTAATTCTTTTGAATTTAATATCATCTGTTACAC 279474 28 89.3 0 ......A......A.............A | TA [279449] ========== ====== ====== ====== ============================ ======================================= ================== 7 28 96.4 37 TGAACATTAACATGAGATGTATTTAAAT # Left flank : TTATAACAATTGCAGGATCAGGAATATTGTATAAAAATTATTTTACTAATATTGATTCAAATAGCTATTTATCAAGCAAAGATGAATCTGAAAGAAGTATTTTCTGTCATGAAGATGATAAAAGCAGTAAAAATACCCACAGTTTTGATTTTAAAAAATTCGATGGCAAGTGGTCTTTAATGGAATTTACATCAAGCAAAGGCAAGCGGTAAATTTGATGTAAGTGTAAATTCGGATAGAAACATAGATATTTCTCATATAGATTTTTTTGATTAATTATATGCACTGATGCTATGAATAAAAACAAAAAAATTCTAAAAGTTTTTCCAACCGCATTTAATTTTAAAACCTATCCTAAGCATTGCAATATAAGGCTTAAGATAGGTTTTGTTTATGTTTTTCTGAAAAATCACAAATGGCTGGAAAAATTTTTTTAATCATTGTAAAATCAAATGCTATATGCTATTCTTAAAATTAAGGAATGGCTAATTTACTATGGA # Right flank : ATGGTAGTTGTAGCTTATGTTATAGCTATTATTTTTCAATATTTAGAGGAATATTTTTACATATGTAGAATATTTGTATATAGTCCCTTTAATTCATTATCAAATCTTTCTTGAATAAAAAGGAGCCTGTGTATGCAGTGGGGGCTCCTTTTTTATATTATTTGAAGGAATTTTTTAACATTTATAGAATATTAAATATAACGGCTTCCCAATAGGTTGATTATAGACCTCCTTGCTTAAGCAAAAAGAACCCCAATAAAAAGGGGTTCTTTTTGTATGGATTTATATATTGGTGCTATGTATTGGTCTATTTTTACTATATCCAGATGTAGAAAAGTTAATCAGTAAGAAATATATAAGATGTAAATTTTTAAATATATTTCTATAATGAGAGTACCTTATTTTTTATTTTTTTGATAAAAATTTTAAGAAAATTAGCAATTTATTAATAAAAATTTAAAATAATTATTTAATTTCATTTTAAAGTTGTATCAGAATGT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 104894-104274 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBCQ010000006.1 Clostridium botulinum strain CDC-CR2 6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 104893 30 100.0 37 .............................. GTATCAAGTGTAGGTATACCTACTGGTATGCATTGTC 104826 30 100.0 37 .............................. CGTTTTTAGAAGAACATTTGGAACAAAACATTATAAT 104759 30 100.0 37 .............................. CGTTTTTAGAAGAACATTTGGAACAAAACATTATAAT 104692 30 100.0 34 .............................. TGAATTAAATTTTATAGCTATAGTAGATGATAAA 104628 30 100.0 33 .............................. CAAGACCAAAATCAGGGTCTTCTAAATCTTCTA 104565 30 96.7 36 ........A..................... GATACTACGCAGGTAGTAAGTAAAGATGGCTTTGGA 104499 30 96.7 34 ........A..................... CCTTTTTTTAAGTTTACTGTTTCAATATTATCTT 104435 30 96.7 35 ........A..................... TCTATTATTGCAGAAGTTGAAGAAGCATTATAAAG 104370 30 93.3 37 A.......T..................... AACGGGTGTCTTTTTTTATATGCATTTTTAGGTTTGC 104303 30 80.0 0 A.......T......G...G........GC | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 96.3 36 GTTGAACAGTAACATAAGATGTATTTAAAT # Left flank : GATAACTAGTTTAGAAATAAAAAGATTATGTTTTAAAATTAATTTAACAATATAAATTACAACAAAACTTTTTATAGTTAATTCTAGCATATCCAATACCACCCCCTATTTATAAGTGAAAGACTCACCAATATCCTAGGAGGATAAAATATTCAAAACCCCCGTAGCCATCCACTACGGAATTACTATCCTAACTTGGATATTATATCATAATTATCTATACTAAAAACAGAGGAATTAAATGGTAAATAACATTTTAGTTTAGAATACTACGTTTATTTTAGGATGAAAATAACAAATAATTATATAGAATACGCTAATATTTTTTCAACCAACTTTAGCTTACAAACCTATCTTAGCTCTTGAAATATAAGGCTTAAGGTAGGCTTTTCTTACATATTTATAAAATATTATAATCGGTTGGAAAACTTTCTTTAAAATCTTGTAAAACCAATGGGTGTATGCTATTCTTAAAAATAAGGAATGGCTATTTTGCTATG # Right flank : AGAGAACCCAAATCTACGATTTGGTGTGAATCGCTTACTACTTAGAGAGTGGCATAGGGATTTTTATAAAACTAAACTATGCATTGTGATAACTTCTATATAAATTATTAGATAAAGGGGGATTTTATGAAAAATAAAGTTACTAATAATTTAAATTTTGTTGCAGCAATATTGCTTGGAATTGTGGCTATGTTAAATTTTTCTCAGCATAAAACATTGCTGGGAATTACATATATCTGTTCAGCAATATGTTTTTGTACACTTGAATTTTCAAAAAAGAAAAATGCAAATCATAAATAAATTTAGTATTAAAAACCTGTCTATTTTTAGGGCAGGTTTTTAATATTTAAAGGAGATAGATAAAATAGTTTTTTGTAGTCATGTAAATATTGTATATTATTTTATATTTTTGAAGGATTATCCATAATTCTGTAGAAGAATATTTGTGTAGGAAATATATTATAAAAATATGGAGGGAGTATTGTGGATAAATTTCGTAA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAAGATGTATTTAAAT # Alternate repeat : GTTGAACAATAACATAAGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 2 106227-105805 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBCQ010000006.1 Clostridium botulinum strain CDC-CR2 6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 106226 30 100.0 36 .............................. GGGATCTTTAATGAATATAAGTCTTAGCAATAAGGC 106160 30 100.0 36 .............................. TCTTCTCTGGCTAATGCGGATGCTTGTACCTTATCC 106094 30 100.0 36 .............................. TCAAATAATATTGGATAATTACCGTCACTAAGGCTT 106028 30 100.0 37 .............................. AATGTTAGAAATTGATTTAGAAAAGGAAGAAAATCAG 105961 30 100.0 34 .............................. TCAACACTATTTTTTCTTTCTATAGCTATGTCAT 105897 30 100.0 33 .............................. TAGATTATGATCCAGCACCAATACTTTTATTAG 105834 30 90.0 0 .......................C.G...A | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 98.6 36 ATTGAACATTAACATGAGATGTATTTAAAT # Left flank : AAAAGCCTACATTCATGTATTTACTTTGTTTTTTGTAGTAAATATTTATGATATGATTGTTTTAGATATATGTATTTTTTGTCACAGTAAAAAAACTAGAATACCTGGTACAGAGGATATGGATAAAGAATATAGGAGTCCATGGCATCATATAAAAGGGGCTGGTATTGGAACTATAATAGGTGCTGTAGTAGCATTATTATCTGGAGGAATGCTTCATTTCATATCAATAATATAGTATTTAAGCAGGGAACCCAGATCTTAGATTTGGTGTGAGCCGCTTACTCCTTGGAGAGTAGGATAAAGAGTTTCATAAATTGAATTTTTCCAGGCGTAACAAATTTTAAAACCTATTCTAGCTATTGGTATATAAGGCTTAGAATAGGTTTGTTTTATGTATTTATTAAAAAACGTAATCACTTGGAAAACTTTCTATAGAACCTTGTAAAATCAATGGCTATATGCTATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : AAACAAATAACGATGAAAAGATAACAAATAATAATTAAGGTGGTTTTTCATTGACAAGGTTTTTCAACATTTTGAAATTGAAAAACTAACAGCAAATATTATACAGAAAACTATAGAGAATCAATTATAAGCAGTAAAATCTAATTTTATAGTTAGTTTTTTTATAGAATTTTATAGTTAAAAAATTAAACATATAAATATGTGTTTATTTTTTATATAAATTTGATATAATATAAATAAGAAAAGCTTAGTGTTGGAGCACTAAGCAATCCTTAGAACATTTATTTTGTTTTAGGGCTATTGGATGAATTTAATAATTAAATTTGAGAGATTAAAGCACTATTCTTGGTCGGATGGGTGCTTTTTCTCTTTGCCATTAAGTTCTATGTGAATACCAAGAAATTTAATCTTGATAACTAGTTTAGAAATAAAAAGATTATGTTTTAAAATTAATTTAACAATATAAATTACAACAAAACTTTTTATAGTTAATTCTAGCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 119206-119046 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBCQ010000006.1 Clostridium botulinum strain CDC-CR2 6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 119205 30 100.0 32 .............................. TGGAAGCATGGAGGGCTAGATTGGACAAGTAC 119143 30 100.0 38 .............................. CTAATCCCATGTATTTTCCAGAGCTCAACTGGAAGAAT 119075 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 3 30 100.0 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : AATATTTATGGTGTCAGATACTGTGCGTCCATTATAGTAGTTTTTCCAGGTAAATTAAAAAATAAAAGTAATGTAAACTCAATCATATTAGTGGTTTATATAGGACTTTTTATAGAAATTTCTATTTTATAAAATCATCTGGAAAGCTTTCTGGAAAATTTTAGTATTTAAATGGGGGTGTGCTATTTTAGATTTTAAGGAATATTCATTTTACAGTGGTTGAACCTTAACATAGGATGTATTTAAGCAGGGAACTCAAATTTACAATTTGGTGTGAGTCACTTACTCCTTGGAGAATAAGAGAAGGAGTTTTATAAATTGAATCTTTCCAGGCGTAACAAATTTTAAAACCTATTCTAGCCGTTGATATATAAGGCTTAGGATAGGTTTTGTTTTATATTTATTAAAAAACGTAATCACTTGGAAACCTTTCTATAAAACCTTGCAAAATCAATGGTTGTATGATATTCTTAAAAACAAGGAATGGCTATTTTACTATG # Right flank : ACTATATCTCCTCTTGTAGCGGGAGTTCCTATACCTGTTGAACATTTAAGTTCCTTTTAGGTGCAATTATTTTTGGGTTATTGACTTGTAGTCTAAAGCTACACCATAAGAAGGTTCATTAAACACATGTGGAGGAACAAGTAATAGATACAGCACTTGCTATTGATGCGGTGAATTGTATTACAAATAACGAAGGTTTTATTTAAAACTGTTCATATGGCTGGATTTAAGAAATATAATAGTGTCCTAAGTTGTATTATAATCTAAGTAAATTATAAAAATATATGTTTATATTTATTTTAAGACTATTGTATTAATATGATTCATCCAGATTTAATTGTGAGAAATTTCATTATAAACTTAATAGGGAAGTCTTAGATTTTTTATTGCATGAGATTATACGGAAAATATTAATTTTCACTATAACTTAACAAATGATTGATACAATTTTAAAAAAATCAGGACCTACAATGATAAAGTAGGTCCTGATTTTTATTAAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //