Array 1 1908-1099 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUEP01000198.1 Salinivibrio kushneri strain IC317 scaffold198.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1907 28 100.0 32 ............................ TAAAGGGCCCGCTGCAAAGTTAAAACTCGATG 1847 28 100.0 32 ............................ GTCGACTGACAACCAGCTCATACACAAAAAAG 1787 28 100.0 32 ............................ GTTAAAGATGCGCAACACATCTATGCGATTGC 1727 28 100.0 32 ............................ GGTAGGTAGGTGACGACCATCGCGTAAATGCT 1667 28 100.0 32 ............................ TGACCGCCTTGCGCCTTGGTCGCGGTGTCGTT 1607 28 100.0 32 ............................ ACTTGGGTGTCGATATCGACCTCGAAGTTACC 1547 28 92.9 32 .............T...........G.. GTACATCGCTTCATCAGTGATGCGAGGTTTGG 1487 28 100.0 33 ............................ CATCACGCGATCCTTCGTAAGTTATGAAACTTA 1426 28 100.0 32 ............................ ATAATCACCGGATATGGCGAGCAAATAAGCAT 1366 28 100.0 32 ............................ ACTCTTTAAGCTCACGCTTCCACTTCAACAGT 1306 28 100.0 32 ............................ ATAGCGCAGCCGGAAATATCATCCCCGTCACA 1246 28 96.4 32 ...A........................ TGCGAAAAGTACGGCTCGATGCTTTCGCCGTT 1186 28 96.4 32 .............T.............. ATCGAAAATTTGTAATTAATTGCGGTGATTAA 1126 28 82.1 0 ...........G.........G...GTG | ========== ====== ====== ====== ============================ ================================= ================== 14 28 97.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCTGTCACTGTTGTCACTTTTTGGCTGATTTAAGTTTGTACTGTGTCTTACAATGGCTACGCATCACGTGCCTCGAACGCAGGGCGGTGTGTTTAGTTTTGCGCCCGCGAGTCCGTTCGCGCCATACTTTGAAGCTCCGCGGTTTTAATTCACTTCGCATTAACGCAATCACATCGTCTTGGCATAGCCCATAGAGTGCTTCAATCGCCTCAAACGGGGTTCTATCTTCCCACGCCATTTCTATAATTCGGTCAATCTCTCCCGGTTGTTCGTTCAATGCCATGTCGGTCTCCTTGTGCTGGTGGCCAATAATACGCGTAGAGTCGGAAAAACCGATCAGCGTGTTCCTTCTAACCCATCAATGCTGTTACCCTTGTTTTTGGGCTCTTTAAAAATAAACAGCAAATACAGATAGTTACGGAAAGCCATTTTTAACAAGAGTAAAAGATGATGTTTATCCTAACGGCCTGTTGTTACTGACGATTATTACGCTATTCTAT # Right flank : ACACAAGCCCCAGCACGATTTTGGATAGGTGCACATTGCCAACGGGCGCCTGTCACGATCAGGGGTTAATAGTTGGCTCCGATGTCGGATGGCGCGCGGCGAAAGTCATACCAAGTTTGCACGATCGAGTTGGCGCTTATGCCGACCTACGCGAACTTTAACGTCGGTGGTGCCATTGGCGACCGGGACACAAGCCCCAGCACGGTGTTGGATAGATGCACATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCCTCAATGTCGGAGGCGCGCGGCGCAAATCACACCAAGTTTGTACGATCGAGTTAGCGCTTGTCCGACCTACGCACAGGCAGCTTAGATACTGAAATAGTTGCTTTTTTTGATGCCAGTTCATTGTTGGTGGGTCGTGGCATGGAGGAAGTAGGGAGGGGATGGTTCAATATCGACAAAAGCGTATGACTAGCAATGACCATACACGTCAATTTGACGCATGTTTGTAGCCAAAGTTA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4680-3978 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUEP01000155.1 Salinivibrio kushneri strain IC317 scaffold155.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================================================================================================================================================== ================== 4679 28 96.4 32 .............G.............. GTTAGTCAACATGGCTCCGAACTATGGATCTG 4619 28 96.4 32 .............G.............. TCGCTCGATGCGCTGGCTCCAATGTCAGATAC 4559 28 100.0 32 ............................ TTTTGCCGCTTCTTGCACGCGCCGTGTCATAC 4499 28 100.0 32 ............................ TCTTCGCCCCAAAGCGAAACGGCGGACTTACT 4439 28 100.0 32 ............................ GAGTGGAGTGATTGGAGAATGAGCGGTAAAAA 4379 28 100.0 32 ............................ GAGCATGGCTTGCAGCTGATCACTGTTCAGGT 4319 28 100.0 32 ............................ TCATGCGCGATGGCGGCACTTTCGCCCATTTC 4259 28 96.4 32 .............T.............. ATCGAAAATTTGTAATTAATTGCGGTGATTAA 4199 28 82.1 165 ...........G.........G...GTG ACACAAGCCCCAGCACGATTTTGGATAGGTGCACATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCCTCAATGTCGGATGGCGCGGTGCAACTGGCGCCAGTTGCACTGCGCGCGGTGCAAATCACACCAAGCTTGTATGATCGAGTTGGCGCTT 4006 28 85.7 0 ..C...CTA................... | G [4002] ========== ====== ====== ====== ============================ ===================================================================================================================================================================== ================== 10 28 95.7 47 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGCAAGACTATGCCTACTTTAAACGTTGGAACTACAAATCGCCGCAGCGACTGTATAAAAACCTCGATCGGCGCGCGGCCGCGATTGCCAGCAAAAATGYCTACGATGAGGTGGAAGTAAAGCGTCGTTTGTTAGAAAACATTAAAACGGACGACAAACGCTGGTCACTGCCTTTTATTCAAGTGACCAGCCTGTCGAGCCAAAAACGAGCAGGGCAGCCAAATACCGAGTTTGCTTTGTACATCGAGCGGGAAACAACCAAACAGCCGCCAAACAAGGACCAACCGTTCACCTGTTATGGGCTCAGCCGACGAGAACCCGATCAGCAATCAGCGGTACCGTGTTTTTGAGGGGGAAACCCCTCTTTACCCCTTCTTTTGGGGCTCTTTAAAAATAGACAGGAAATACAGTTAGTTACGGCAGGCCATTTTTAACAAGGGTAAAAGGCGATTTTTATCCTAATGGCCTGTTGTACCTGACGATTATTACGTTATTCTATT # Right flank : AAGCTTTGCAGGTGTTCCGCCGCTTTGAGCTTTCCTCCTTTCCTCTGTTTCTCCTACCGTTGACACCTGTCTGGGTTTTTCATAGAAATGACTAATTTGGCATGCTTCTAGGTGGTTAAACTTTATGCCCTGACTTTAATCGTTGAATATTTTCTATCGATCAATCAAAAACTAATCGACGGGGAGACTACTCCTGTCTAGTTCTTTTTAACCGGTGGCAAGAATCTATTCTACGATAAGAAAGTAGCGATTTTTGGTCGATGTTGTCTGTTGTTGACTGGCAGGAGTTGGGTATGAATATCAATAACACCATGAAGTTAGTGTTTTTTATAATTGGGGCAGGGATTGTCGTTAGTTTTATAACGATTATTCAACTCAACGGCCTAATGAATAAAGTCGATGAGATGGCTCAGGTGCGATATCAGTCGTATCAAACGGCTGATGAATTAAGGCAAAGCTCTGATGACTTGACCCGCTTGGGGAGAACGTATGTGGTGACG # Questionable array : NO Score: 4.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-1.45, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCAGAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 5613-5290 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUEP01000085.1 Salinivibrio kushneri strain IC317 scaffold85.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================== ================== 5612 32 100.0 40 ................................ TAAGACTCAAAATATCCTTCACAAGGCCAAAAGCGTTTCG 5540 32 100.0 41 ................................ TAAGACCGTAATTGAGATACCGTCTTTGAGGCGACTCTCGT 5467 32 100.0 40 ................................ TAAGACGGTAAGGGTTGGGTGCCTGATCAAACGGATTGAT 5395 32 100.0 42 ................................ TAAGACGGAATGCGTCTTTACCTACAATGTAATTTTCTTTTT 5321 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ========================================== ================== 5 32 100.0 41 GTCCTCACGGACCACGCCCTGACTAAAGGGAT # Left flank : ACAATTTTACCCCAAGTGGTTTGCGTGGCAAAAAAAGCGGCGTCCAGCATTACGTCGGTTGGCGCGTCTTTGTCGTTATGCTATGGAGAGGGCGTAATTTATGGATAAACCCCTATGGTTAATCAGCTACGATGTGAGCCATCCCAAGCGGCTACGGCGTATTTATCAATATTGCAGCCAGAACGGTTGGCCGTTACAAAAGTCCGTGTTTGTGTTTGCGCTCAATAAAGCGGAAAAAGCACAGGCTTGTCAGGAGCTTATTGACTTGCTTGACAGTGATGAAGATAAGCTATTGTGTATTCCTTTTAATCCCACCGCGGGCAGCTTTCATCTGATGCCGCCCACTGACCTGGTGATTGCCCATGATGATCCCCGCTTAGCTCGGTTCGTTCAATAACACGGCATGGAATTTGCTTGATTTTAAAAGTTATCCACTGTTTAAAACGCCTGTTTATTTTGCGACTTGCAAAGGAAAAAACAATCAGTTATAAATAATAATA # Right flank : CGATAGGAAGGGCCTAGGTTATAGAATCTTAGGCGCGAGGATCGTTAGCGGTAAAAAAGGCCACATGGTAAACCATGTGGCCTTTTGCGTGTTCCCGTCGGCTAAGTCGTCTAACGGGTCGCGTTTTTATACTGAATATTGCCAGGCGCAATCGTTAGGCCTTTATACACATAACCCGCTCTGTTGACTTTCCGCTTGTGCACATTATTAATGGTATAGTACTGGCCTAATTTCTTACCCAGCTTGTCGGTGATTTGCTTGTTGGTCTCTTTTAACAAGCGATTCCATAAATTTTTGTGCCGTTTTCTCAGCTCATCAAGCGGTCGCTCTAAGTCGCTGTTGAACAGAATGTCTGTATCTTTTCCATCGCCTTGGAACAACCAGCGCTTGCGGGCTACGCCCGAATCCGTGTCATATTTTACGATTTCCTCTGCGGTTTCTTCGGCGAGCTCTACCCATCTCACCAGATCCCAATCGTCGCGCTCGCTTGGCAATGCCGC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCACGGACCACGCCCTGACTAAAGGGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 2 9858-8756 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUEP01000085.1 Salinivibrio kushneri strain IC317 scaffold85.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 9857 38 100.0 35 ...................................... TTTTGCACGACGGTAAAACTCTCGGATCTTCTTAC 9784 38 100.0 35 ...................................... TACCCCTCTTGGGATTGGAAACGGTGAGCAACCAA 9711 38 100.0 34 ...................................... AGAAGTTCTCTACAGTATCGTTCAGGTGAGTATC 9639 38 100.0 34 ...................................... CGAAGCTATTACGTGACCGTGTAAATGGTGTGGT 9567 38 100.0 36 ...................................... CAGATTGTGGTTCCTGCGTATGTTTTCATAGCTTTA 9493 38 100.0 33 ...................................... TGTACCGTTCGAATACTACTAGATTGTCGTTTT 9422 38 100.0 34 ...................................... CGAAGTCGACTATTATCTTCATCGTCAGATGCAT 9350 38 100.0 33 ...................................... GATATCGGAAGACCAATCTGACACTGAGATGTA 9279 38 100.0 34 ...................................... CATAATGCCATCTGGATAGTGAATCGTGATTTAG 9207 38 86.8 34 ..............T........G.........G.T.G GTAGCGCCTAGGTCCTAGACTCCTAGGCCCTAGG 9135 36 76.3 34 A..T.G.T--TT..T....................... TTATTTGCTCGTTTAGTTGCTCAAACTCTGGCTT 9065 38 89.5 19 ..............T..................G.T.G GTAGTGCCTAGGCCCTAGG Deletion [9009] 9008 36 76.3 34 A..T.T.T--TT.......................A.. TCTATGCGCGTGTCCTCAATGACATTAAGGAGCC 8938 38 97.4 35 ..............T....................... TGAATGCGTCAACACGCATCGCTGAGAATACTGAA 8865 38 100.0 34 ...................................... TCCGCGTCAATGATGTTTTAACGCTTCTCGGTGG 8793 38 84.2 0 ..............T.......TC.........G.T.G | ========== ====== ====== ====== ====================================== ==================================== ================== 16 38 94.4 33 GTCCTCACGGACCACGCCCTGACTAAAGGGATTAAGAC # Left flank : ATTTATGTGGGGAATGATCAGATTGTCCATTTAAATGGCGACGGTCGAGTCGAAGCCGTGTCGCCGGCGCGTTTTTTACAACGCCTGGGTGGCTTTAACCCAGCGATCAGTATTTATGTTTCATGCCGCGATAAGCAAGCCGTCGGCTCACCGGCGGCTGCCGCGCAGGCGATGCAGGCGATAGGCAAGCGTCAAGACTACAATGTGCTGTTTGACAACTGTCATCAATTTTCGTCATGGTGTTTGTCTGATAACCGTGCAAACAGTGACAGTTTTACCTGGATGCTAAAAGACACCGCTAAGGCGCATTTGCACGCCAATACCTGGCGCGTGTGGGATTGGGAAGATTAAAAATAAATCAATAAGCCGCTCAGTCGCTTACGCGCGGGAATAATAAAATGGCACGTCATTTGCTTATTTTGTTAAAATTAAGCGTGTTTAAAACGCTTGTTTATTTTGCAACTTGCAAAATTAAAAACAATCAGTTATAAATTGAAATA # Right flank : GCAGTGCCTAGGTCCTAGAACCCTAGGCCCTAGGATCTTTATTTCGTGCCCTGACGAAAGCGAACCTCCTTGTGCTTGATTTTTCTGCCATCACCAATTGGTGATCCGTGCGCTGGCGTCGAATAATCGATAAGATTATCCTCATCAGTTGCCCGCGATACTGGGCAGCGTTTAGCGACCCATTACCTCAGCCCCATAAGGAGATGCCATGCAACACGTCCATATCAATTTGGTCTCGAACCAACTGCTCCCGAATCTTATTCCCGCACTGGGCGACAACGCCTGCACGCACGTGATCCTGGTGCTTGGCGATCACACGCTCAAAGCGCGCGCCGAGGCGTTAGCCGATATGTATCGTGATCGCGATATTGAAGTGACACTCTTTGAAGGCCGTAGTAGTCATGATGTGGCGGCGCTGAAACAACAAGCGCGCGAGGTGATCGATCGTCTCAGCACCGAGTTTGCGGATATGCGCTGGATATTGAATGCCACCGGCGGCA # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCACGGACCACGCCCTGACTAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [23-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //