Array 1 91613-92965 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOUL01000007.1 Escherichia coli strain MOD1-EC6691 MOD1-EC6691_7_length_241852_cov_49.4233, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 91613 28 100.0 32 ............................ AACACCATAATAAGATTCGCCGTTTATAGTAA 91673 28 100.0 32 ............................ GCTAGGGGATGGATTGTTTGAGATACGAGCAA 91733 28 100.0 32 ............................ AAATGCGGCCAGCATATTGCGCTGCTCGATCG 91793 28 100.0 32 ............................ ATGACAAAACTGATATCTGACTCCAGATATTC 91853 28 100.0 32 ............................ GGTAAGTGGGTTTTGTTATTTGACGGGGGAAT 91913 28 100.0 32 ............................ AGGTTGAGGCGACGGCAACTAAACTGCGTGGC 91973 28 100.0 32 ............................ CTGAATCGCACAGCTAAACACATGCACCGTGT 92033 28 100.0 32 ............................ ACGTTGTAGCAAAACACTGCCGGGCCGTGACT 92093 28 100.0 33 ............................ AGACTGCGGTTTCAATGCGGCGGATATTTTCGA 92154 28 100.0 32 ............................ AGCGAGGCTGCATACGTTGAGTGCCCACACTG 92214 28 100.0 32 ............................ GCATGAGGCACCGCCCTGCACCGGTATTTTAT 92274 28 100.0 32 ............................ TACCGTTTCCCGCATGGAGAAAAACGCCACAA 92334 28 100.0 32 ............................ AAACGTGCGGCGGGCGTCGTGACACGTAAATC 92394 28 100.0 32 ............................ GAACATAAATCAAAGTGGAACCGTGCGGAACA 92454 28 100.0 32 ............................ AAAATTGCCGATAGCGGTTAGGTAATTGGCAT 92514 28 100.0 32 ............................ TCTTCTTCCTGTTTTACTCCCATATGCGGGAA 92574 28 100.0 32 ............................ TGTACTGCCTGATGGTCGATAACCTGTCCGGA 92634 28 100.0 32 ............................ GTTCGAGCGCCCGGAGTTCACAAAACTACCCG 92694 28 100.0 32 ............................ AAAATTCATGTTCCGCTGCCAGTTCGCGGGGA 92754 28 100.0 34 ............................ ACATTGCAATTAACTGATATCGCACCATCATCGG 92816 28 100.0 32 ............................ TACATACTCAAACGATTACTGAATCACAAAAC 92876 28 100.0 32 ............................ CGGCTGCACGAATTCGCGAGCGAACTGTTTCT 92936 28 85.7 0 ....................A...C.CT | T,C [92956,92960] ========== ====== ====== ====== ============================ ================================== ================== 23 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGCTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 102023-102831 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOUL01000007.1 Escherichia coli strain MOD1-EC6691 MOD1-EC6691_7_length_241852_cov_49.4233, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 102023 28 100.0 32 ............................ GCTCTGTTGGATGAACGCGGCGCATTAACAAC 102083 28 100.0 32 ............................ CAGCGGAGTTTTTGACTGAACGAACCCCTGAG 102143 28 100.0 32 ............................ CTAATACCCCTGACGCCGCTGCCGCCTGGATA 102203 28 100.0 32 ............................ AGCCCGAGTGCCTCCGGTCGTAATCTGTGGTG 102263 28 100.0 32 ............................ AAGAACCCCCTGTTAATCCATTGAGAAACCTG 102323 28 100.0 32 ............................ CACTGCTCCCGTTTGCGCTCTAAATATTTACG 102383 28 100.0 32 ............................ GCAAGCAGCTCAGGAATACAGAATGTGCAGCT 102443 28 100.0 33 ............................ GGGCCAACGCATATCACCGAAACGCTGGTTGTT 102504 28 100.0 32 ............................ TGCACGATTTCCCCCGGAGTGTATCCGTGTGA 102564 28 100.0 32 ............................ ACTCATCATCGTATAAATCTTTCATAGCCACC 102624 28 100.0 32 ............................ GCCCAGGACTCTTCGCCGTAGATGCCGCGCCA 102684 28 100.0 32 ............................ AAGTGCAACGGTTGCCAGCCCGCTGAATGAAC 102744 28 100.0 32 ............................ TGCACGCTGGGCAGTGCCCTGACCGGTGCGAA 102804 27 92.9 0 .......................-C... | T [102824] ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCTTTTTTGTGTAGGCCATGTCTGGCGCAAAAAAAAGCCCGTACTTTCGTACGAGCTCCTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTTTTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCAATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGCCGGCTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //