Array 1 3101-1812 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZQN01000013.1 Limosilactobacillus reuteri strain LR5A LR5A_contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3100 36 100.0 30 .................................... ACACCTAGTCGCCACAGAAATAAACAATAC 3034 36 100.0 30 .................................... TTTCTGGCAAGCTTGTCTGCTGATGAGTAG 2968 36 100.0 30 .................................... CTAAGAAGAATGCTAAGTTGGATAAGCAAC 2902 36 100.0 30 .................................... GACAAGACAAGACAGGTAGTAGATATACTT 2836 36 100.0 30 .................................... CGTGATATTACCATGTGTAATCGTATCTAA 2770 36 100.0 30 .................................... GCTATGGATTATGTATCACAAATTGATATT 2704 36 100.0 30 .................................... AACAGTATTTAGGGATGCTAGATCTCATAG 2638 36 100.0 30 .................................... AGTTTTGGGATATTACTACCGAAGAGGCGT 2572 36 100.0 30 .................................... CTGACTGCTTAGCTTCGTTGATAATCTTAC 2506 36 100.0 30 .................................... TAAACGTGAGGGAAAGAATGACTAATAAAG 2440 36 100.0 30 .................................... AAGCCCAGCCATTGCAAGAGCCTTAACGAT 2374 36 100.0 30 .................................... GGCACTGACCTTGAAAAGGCACAGGCGTTC 2308 36 100.0 29 .................................... TTAATTAAGAAAAAAGAGAACCCTTGGCA 2243 36 100.0 30 .................................... GACGCTCTACTGTGAGAGCGCCCTTGAGAT 2177 36 100.0 30 .................................... ATTATGGCCGATACTATTAAAAAGGAATCC 2111 36 100.0 30 .................................... TGATGAGTATGATTTTCCGTTAAATGCCAT 2045 36 100.0 30 .................................... TGAAAGAAACATTAACAGCACCGGTAAAAA 1979 36 100.0 30 .................................... ATCACCAAAGAATATAAAGGACACACTTGG 1913 36 100.0 30 .................................... TTGGTATTTTTGTTAATACGTTCAGCGGCT 1847 36 88.9 0 ...........G............G.......T..T | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.4 30 GTTTTAGATGTACTTCAAATCAATAATGTTTAGAAC # Left flank : TTTATTCAACGGAAATTGTAAAGTCAATAATAAAAAATTTAACAGAAGAGGATCGTCATTTGCTAGATGCTGAAGCACGTCGGCTTTATTCGAATGTTCAAGAAATTTTATTTATGACAGATTTACCGCTCGAAGTTCGTTACGATGGTGACATCAAACGATTATTAAATTATTGTAAGATTAAATTTTCACCATTAGTTCAGCAAAGCCCTTATGATATAATAAAAACAGATTTAAAGTTACATTTAGAATGTGCTGATAGTTCATGTGTTGGGTTAAGTAATGTCGCTAATTACCTAGATTCAGCTCAATTTAACGAACTACAACAACTAAACATTGAATTGAAAATTCCTGTTTTATTAATAGAATTCACAGAAATAGATAATCGTAAATACTATGGAAATGCGGATTTTTATTATATTGACAAGGATTTTGTTGATTGGAAGTTATAAACTATTAATTCAAAATTAGAAAATAATGGTTTTAGATGTACTTCAANN # Right flank : TACACGTAAACTATAACAATCACAACGATGATATTTTTAGATATACTCCAACCTCGTTTTCCCCGCCAACTTCAGCGGGGCTTTTTCATTTTCTTTTCAAACTAGTGTATAATATTTACTAAACCCATTACTAAAAGAGGTGAAAAATGATGGCGACAATTAAAGAAATTGCGGAAAAATCAGGATATTCACCAGCAACGGTTTCGCGCCTTTTGAATAATGATCAAAATTTATCGATCAGTCCAAGCACCCGCAATAAGATCATGACGGTGGCTAATGAGCTTGGCTATTGGAACAACCACAAGAAAAACTCTCAGCAGCAACCAATCCGTCCTAATCTTGCTCTATTGTATCGGGTAAGCGGTGAAGAACAACTACAAGATGAATATTTTGCGTTTTTGCGAAATGCAATTATTAAAGAAGTCGATGAGGCGGGAGCGCAGGTTGAAATCTTTAGTAATATCAAGGATTTGATTGCGGTGGCTGATTCGTTCCAAGGA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGTACTTCAAATCAATAATGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //