Array 1 26294-25072 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDLT01000103.1 Brochothrix thermosphacta strain Bth-7811 Bth-7811_contig23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 26293 36 100.0 30 .................................... TATTTAGTGGCACACCCGTTTTTTTACTAA 26227 36 100.0 30 .................................... TAATGTGAATGTCACGACCGCTGCTCCTGA 26161 36 100.0 30 .................................... GATGTATCTTTATAACAATTGGTCTTCTAT 26095 36 100.0 30 .................................... TTTTAAGAATAATAACCAATACTGCATATC 26029 36 100.0 30 .................................... ACCACTAGCTACCAAAAAAGGCTGGGTTAT 25963 36 100.0 30 .................................... AGGAACGTCCAAAGGAATAATTATCATGAA 25897 36 100.0 30 .................................... TGTACCTTGCTAGGCAAGCCTCGGAACTAT 25831 36 100.0 30 .................................... CCATACCATGTACATCTTGACCGACTTATC 25765 36 100.0 30 .................................... TACGGCATTCGGTATTCCGTTGTCTCGTTT 25699 36 100.0 30 .................................... TTTAAATTGGGAGCGAGCTAATAAAAATGT 25633 36 100.0 30 .................................... TGGCTAACGGAAGCAGAAAACACAAAACAT 25567 36 100.0 30 .................................... ATATGGTGCAACAGGTATGTTAGGTGTTAT 25501 36 100.0 30 .................................... ATATGGTGCAACAGGTATGTTAGGTGTTAT 25435 36 100.0 30 .................................... CACGCATTTCTTTTTCGTAATCTTTATTAA 25369 36 100.0 30 .................................... CAAGTTTCCAGGATATAACAATCGCCTTAA 25303 36 100.0 30 .................................... CGGTGAGTATTCGAGACTATCAAAAGTTAT 25237 36 100.0 30 .................................... ACCTTTTGCGTAAGCTGGTACTTTCCAAGT 25171 36 100.0 30 .................................... AGCGCCTCGGAATATCATATAATTCCCACG 25105 34 88.9 0 ..........................--.....G.G | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.4 30 GTTTTAGAGCTGTGTTAAATTGAATGGTATTAAAAC # Left flank : TATTACTAAAATTTATAAACAGCTAGAAAAACAGTATCATAATAATAAGGAAATCGATCTTATTGCTGATCAATTAATAGAGCTCCGTCAACTGATAGGCATTCAGTTAAATGACTATGATTTACCGCTACAACTGAATGAAGAAGTAAAACTATCTTCGCTTTATAAGCTGTTTAATGTTACTATAGAGGTTGAAACAGAGTCGATTTTGGATAGATTATTACTACTGATTGATCTTGTCGCACAATTGAAAATCGCTCGTATCATTATTTTGAATAATGTAAGGTGTTATTTTGTAGAGCAAGAGCTTCTAGAAGTATACAAGTACGCACTCTATAAAAACATAAAGCTATTACTGATTGAATCAACCTTCAAAAAAGGCAAATTGCAATATGAACGAAAATTACAAATTGATAACGATTATATCGAATTTTGGCAGTAATACCTTCATTTTTGAATCGCGCAACGAGAGCAGTAATGACAAAATTTCATTGTTTGAG # Right flank : ATTGACGTCCATTGATATAATGGATGTCTTTTTTTGTTATCTATAACTTTATTATGTCAACTAAATAAAGGGCATTTAAAATAACATGACAAACGTTGTTATGCAAGGTATGATAGAACTAGATTAACATTACTTAAAGGTGGTTGGAGGATGACTGGATTAAAAATTAAGCAATTTAAATTAGATAAACAGGCGATTAAGCAAATTAGTGATGACTATATTGTCGACTATCCAACTGTTTATTTGTTAAATAATGATAAAGAAGCGTATATCGGCGAAACTGTCGCGCTGAAGAATAGAATGCGTGCTCATTTAGCCAATCCGCAGCGCAGTAAACTTACAAAAGCTCATGTCATCAGCCACAATGAATTTAATCAATCCGCCACCTATAATATTGAAACGAAGCTGATTAATTACTTTTTAGCGGATCAAAAATATATCTTACAAAATAAAAGTCAAACGGTTCAAAGTATCACTCATAACTACCATAATAAAGCTTA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTAAATTGAATGGTATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //