Array 1 2334195-2333046 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062698.1 Anthocerotibacter panamensis C109 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 2334194 36 100.0 38 .................................... ATGCGCGATACCTGGAGCTGGCCTACCCTGTCCTGAAT 2334120 36 100.0 37 .................................... CAGACCGTCCACGCGAATTCGCGGACAGCTTTGACCA 2334047 36 97.2 38 ...............................A.... ACGAAGTCGATCTCTGATTCAAATCTTGCTAAGTTCAT 2333973 36 97.2 38 ...............................A.... CCAGCCATTGTAGAACCGCATTGCCCTCTTAAAATGAT 2333899 36 97.2 40 ...............................A.... ATCGCCAGGGACTGCACCGCGTCTGTTGAGCATACCTGGA 2333823 36 100.0 37 .................................... TGTACCACAAATATTTTGCTAACGGACACTCTGTAGT 2333750 36 100.0 35 .................................... ACGCGGTCCTCCGAACAAAAATTATATTTGTACCT 2333679 36 100.0 38 .................................... GAGGGCATGTTTTTACTCCTTAATTAGCGTTTTTAAAT 2333605 36 100.0 39 .................................... CGAGCTGTTTTTGCACATCGGCTTCGTACTCTCTCACTC 2333530 36 100.0 36 .................................... AAGGGTGGATGGAATCGTCCACGTCGTCTCGGTCGT 2333458 36 97.2 38 ...............................A.... ACCTGGACGAGGACCAGGAGACGTCGAAACGGCAAAAG 2333384 36 100.0 34 .................................... TCGCCGGGAACGACATGATCATGTTGTCGCCGAA 2333314 36 100.0 39 .................................... CCACAGGTACCGATGCCGGTGTCCAGAGCCATGTTGTTA 2333239 36 100.0 41 .................................... ATGCTAGCTGTATAGCGACATCAACAGCGCCAACACCAGGT 2333162 36 100.0 45 .................................... ATGTCGAAGTTGAGCGGCTGCACTTCGGCCACGTCGACGATTCCG 2333081 36 97.2 0 ...............................A.... | ========== ====== ====== ====== ==================================== ============================================= ================== 16 36 99.1 38 GTCTTCACGCCTCTTTGAGGGCGATTAGTTGGAAAC # Left flank : TAAAATTAAACTTATCTAGCAAGCCTAACTGGTTTGTGAAATGCCCTCTGCCCTACCCTGTCGGGCACAAGCACCCAAACGGGCACAAACACCCTAACGGGCACAAGCACCCAAACGGGCACAAGCACTTACCTGTCCTTTTCGGGCTCCGCTTGGGGATGCGTTGGTCTTGATGTTGGTCAATAGGCGTATGGGGGAGTGGATGAGGATTCGGTTCGGTTTTATCCCATTGCTGGAGGGATGCGTTCTAGTATCATCACTTGGGGGGGCGACCCGCCTCTGGAACAGCCGTCTTACTACTCGGTCTAGAGGGATTTGATGCGACGACCTACTGAAATCCTTGAAAGGGGCATTCCTTCGTCTAGGCCGTCGCTGCTGCTCTGGGTAAGGGTTTGGAGGCTCTGGAGGGTGGGCTTTGGTTGTCTGGATAGTGCTCTATTAACGAGGTCGTCGCAATGGGCTATTGAAGTCCGCTCAGGGCAAGGCTTACTATGGGTAGG # Right flank : GCTGGACCGCCACGCATCGACTTAAGGTGCACCACTCGATGTGCTGCCTCTTTGAGCCGTAAAAGCCCCCAACCCCCTAGCGGAGGACAGGCACTTGCTTGTACCCGCTAGGGTGCTTGTACCCGCTAGGGTGCTTGTATCCGTTAGGGTAGGGCAGGGAGGCGTTTCCCAGGGTAGCGCTGCAAAATAGCCAGATCTGAGCTATCAGTACCTCTTTCTTTCAAACGTCTACCCTTTTGCTTGAAAGAGGTACCTTGTTCTTTGAAAAAAGTACCCTTTTGCTTAAAAGAAGTACTTTGTTCTTTGATAGAGGTACCTTGTTCTTTGATAGAGGTACTTTGTTCTTTGATAAAGGTACCTTGTTTTTTGATAGAGGTACCTTGTTCTTTGAAAGAAGTACCCTTTTGCTTAAAAGAAGTACCTTGTTCTTTGAAAGAGGTACCTTGTTCTTTGATAGAGGTACTTTGTTCTTTGATAGAAGTACCCTTTTGCTTTAAAGA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCACGCCTCTTTGAGGGCGATTAGTTGGAAAC # Alternate repeat : GTCTTCACGCCTCTTTGAGGGCGATTAGTTGAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.30,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 2602068-2603208 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062698.1 Anthocerotibacter panamensis C109 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 2602068 36 100.0 36 .................................... GCAATCGCAAGTAGTTTTTCAAAGGACGGTAACTAC 2602140 36 100.0 38 .................................... AGATTCTCACGCTGAATCAAAAGACTGCGCTCGACCTA 2602214 36 100.0 39 .................................... CAGGACAAGAGCGTTCACATCGTTCTCAACTGCTATTCG 2602289 36 100.0 38 .................................... GTCAAGTCTTCAATCTTCTGCTCTGCCGCTTTCAGCCC 2602363 36 100.0 36 .................................... CTCGTTGAGGGCTAGGTTGCGCTGGATTTTCCCGTA 2602435 36 100.0 35 .................................... ATTGAACGAGTTGAAGCCCTGGCGGCGCTTGACCT 2602506 36 100.0 38 .................................... GCAATTTGTGCGTGATTGCAAAAAAGCTATTGAAGCAT 2602580 36 100.0 38 .................................... CCGATTCTCCTTGTGGATAGGTGTTGATAGCCTTGCCA 2602654 36 100.0 38 .................................... CCGATTCTCCTTGTGGATAGGTGTTGATAGCCTTGCCA 2602728 36 100.0 36 .................................... GCCATTTTGGGCGAAGGCGCAGGTACCCTCGGAGAG 2602800 36 100.0 41 .................................... TCGGTTGGATTTCGATGCCTTCGCTGAGATTACTAACCAGC 2602877 36 100.0 40 .................................... GACGAGGCAGTACAGGCGTCGTATATCCTGGCGGCAATTG 2602953 36 100.0 37 .................................... ACCCGTATGGTTGGAGATACGGGAACGTCCGCTACGA 2603026 36 100.0 38 .................................... GACATATTGGATGACCTTGCTCTATAAATGACCAAAAT 2603100 36 100.0 37 .................................... ATGGTTGATGCTAAGGAAGGTGAACTTCGAGTGACTG 2603173 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 16 36 100.0 38 GTTTCCAACTAATCGCCCTCAAAGAGGCGTGAAGAC # Left flank : AATGTCTCATGTCTATGGAAGGTCCATGTTTCTCGTGATGAGGTAGGTGTTTTCAACATAGAAGTACTTCTTTCAAAGAACAAGGTACTTCTTTCAAAGAATAAGGTACCTCTTTCAAAGAATAAGGTACCTCTTTCAAAGAACAGGGTACTTCTTTCAAAGAATAAGGTACCTCTTTCAAAGAACAAGGTACCTCTTTCAAGCAAAAGGGTACTTCTTTCAAAGAATAAGGTACCTCTTTTAAAAAATAAGGTACCTCTTTCAAGCAAAAGAGTAGGCGTTTGAAAGAAAGAGGTACTGATAGCTCAGATCTGGCTATTTTGCAGCGCTACCAAACGCCCCCCCGCCCTACCCTAGCGGGTACAAGCACCCTAGCGGGTACAAGCACCCTAGCGGGTACAAGCAATTGCCTATCCTCCGCTAGGGGGATGGGGGCTTTTACGGCTCAAAGAGGCATCACATCGAGTGGTGCACCTTAAGTCGATGCGTGGCGGTCCGGC # Right flank : CCCTTCCCATAGTAAGCCTTGCCCTGAGCGGACTTCAATAGCCCATTGCGACGACCTCGTTAATAGAGCACTATCCAGACAACCAAAGCCCACCCTCCAGAGCCTCCAAACCCTTACCCAGAGCAGCAGCGACGGCCTAGACGAAGGAATGCCCCTTTCAAGGATTTCAGTAGGTCGTCGCATCAAATCCCTCTAGACCGAGTAGTAAGACGGCTGTTCCAGAGGCGGGTCGCCCCCCCAGGTGATGATACTAGAACGCATCCCTCCAGCAATGGGATAAAACCGAACCGAATCCTCAGTCGCCTGACATAACCGTTGTAAGCGGTCCTTAAGCTCATGGAACTGCTTCTGTTCCAAATCACACTCAAAAACACTAAACTGCACCCGTTTTCCGTAGCCTGAGAGCAGCGTCGCCACTTTAGTCCGGCGCTTCGTGACCGGAATATCATACGTGACAATCCAGAGCATGACTACCGCGCCCTATGTACAACAAATTCCCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAACTAATCGCCCTCAAAGAGGCGTGAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.30,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 3 2632273-2634599 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062698.1 Anthocerotibacter panamensis C109 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 2632273 36 100.0 40 .................................... ATACGTAGCTGATTTCACTTTGTCCATTAAACACTGAAGC 2632349 36 100.0 36 .................................... TCCGCATAGCGGCTAAGCCCACCGCCTTTCCCTGAT 2632421 36 100.0 37 .................................... CTACTTTAAGACGAAGAACGTTAAGAATTTCGGTCTT 2632494 36 100.0 39 .................................... TCTCGGAACCTTAAATTGAACGGCTTTATCGTAGTCCCA 2632569 36 100.0 37 .................................... GTTTGCGGTCTGTGGCGGCAGAAACTAATACACTAAT 2632642 36 100.0 41 .................................... ACCGCCTTCCGGCACACCAAACGACTCGGTTAGAGATTCGT 2632719 36 100.0 36 .................................... CCCTGCCACGTGCAAAACTATAAAATCTTTTCTGGT 2632791 36 100.0 36 .................................... TAGGTGCAAAAATTACCGCTCAAGACGCTTGAGGAA 2632863 36 100.0 35 .................................... CGAGGTTATCCCGGCTGCCACAAGCGGCACAGGGG 2632934 36 100.0 35 .................................... CGAGGTTATCCCGGCTGCCACAAGCGGCACAGGGG 2633005 36 100.0 38 .................................... GGGCTAAAAGGCTGTATCATGGTTATTACCTCTTTGGG 2633079 36 100.0 38 .................................... GGGCTAAAAGGCTGTATCATGGTTATTACCTCTTTGGG 2633153 36 100.0 36 .................................... ATCGGCATTGCCTTGATTATCTAAAACCACTTCCAT 2633225 36 100.0 36 .................................... AGCGCTTATAATCTCGTACCCATCGCTGATGCTAGT 2633297 36 100.0 35 .................................... CGAGGTTATCCCGGCTGCCACAAGCGGCACAGGGG 2633368 36 97.2 39 ...................................T GCTATCTGGGCTTGGGAGCCCGTCAGAGCAGCAAGTCCC 2633443 36 100.0 41 .................................... CACGCAAAGGCATCGTAGTTTGATTGGGGGTAAAAGCTTAA 2633520 36 100.0 40 .................................... TACAGTTGTTTTAGCCCGCGATGCCCGCAGGTATAAGTAA 2633596 36 100.0 42 .................................... ACACTCTGGCTTTAGCCCTGTTCTTAGACCCTTTGACCCGTC 2633674 36 100.0 37 .................................... GAGCCCACAAATCCAGGCGTTCATGGATTTGCCTTGT 2633747 36 100.0 41 .................................... TCTAGCCCGTGTAAGGACACGTTTTTGCGGTCAACAACAGC 2633824 36 100.0 43 .................................... ACTAGGAGGGGATCAGCAGGTTTCGCATGATGCGCGACACCTG 2633903 36 100.0 39 .................................... TTACCGCGACCATCTTGAAAAAGCGCTAGAACAAGCTTT 2633978 36 100.0 35 .................................... TCAAGTTCAAATTTCATTTCTTTTCCCTTAACCGT 2634049 36 100.0 38 .................................... TGATAGACATCTTTCACTTTGATGCTATCACCATGACT 2634123 36 100.0 35 .................................... TCAAGTTCAAATTTCATTTCTTTTCCCTTAACCGT 2634194 36 100.0 40 .................................... ATAATGTGCGGGCGATAAAGTTTGACCAAATCTCCATTTT 2634270 36 100.0 37 .................................... TAGCAGCTCTAGCAGCCTTCATCCTCAAAAAAGACGG 2634343 36 100.0 37 .................................... CGGCATCGGCGATCTCGCCTACGAAGATCGTTTCGAA 2634416 36 97.2 37 ............G....................... TAATTTGCTTGCAAATCGCTTCCCGCTGTTCAGGAGT 2634489 35 83.3 37 ...................-.....A.C....T.GA GGCGTAACATGTTGCGTTTCTACTGTTTATGCCGGTT A,C,C [2634505,2634517,2634521] 2634564 36 69.4 0 ...A...T..G....AAG....A..TC...A....T | ========== ====== ====== ====== ==================================== =========================================== ================== 32 36 98.3 38 GTCGCTTCTGAGATAGGAAGTGGAAGTAATGGAAAC # Left flank : CGGATCGGATGATCGATGAGTAAGGAGGCCACAATGCTATGGCCCAGAAAGAATTAGCGCACCTCGGAGCACGACCAAACTGGAGAACAGTCTCACGGATGCTAAGGGTCAAGGCTGGATGTGAGATGCAGGGGTGTCTTTATTCCTTACCCAATGAGGAACATCTATTTCTAGAGAAAGACTTCTCAAATTCTGCAAAGTCTCTGGGGATTCAGTGCGCTTTTATCTGATTGGTGGCGTTCAACGCTCTAAAGTGGTCTTTGGGGGGTAATCCGCCTCTAGAGGGGGTTTCTCACGATATGGTGTAGGATTCTCTACTGTGCGACGGGCTCCCGGAATCGCTGAAACCCTGATTTCTCCATTGAGACCGTCGATGCCGCTCTGGGTAAGCTTTTGAGCCTCGTCACTCCTCTCTGGTATCCCCTCTATGCCCCACAATTTCACCGACCGTCGCAAATGCCTCTTGCATCCCTTGCCTGGAAAGGGTTCTAATGGGGACT # Right flank : TCCCAGCCCTGATTCGTCGTTCGCAACAGATGCTTGTAACACTAGCCATGTCTGCGATAAAAAATAGACTTAACAGAAAACAAAACATGAAACAGCAAATGCCAATAGACCCGAGCGAACAGCGAGAAATTGAGCAACAGATTGAGCATTGGTTCAAGCTTTGGGAAATGATACTCAGTCTCCCTGAAGCGCCCGCAGAGAATCAAAGAGCCGTACCGGAGCAATCTGCTGAAGTCAGTAAGGAAGATGTCCATTTGGACGAGTAAACCCCCCGACTGATTGGATGAGTAAACCCCAATCTGAGCGAATCCTTGTAGACGCTTCCCTTAAAGAGCTTCCCCTCCTAGCAAAACAGAAAACCTAAGCCGCTCAAGCACCTTACCCCAAAAAGTTTCTACAAAGAAATGCACGTATCTATAAAGAAACACACCTAAAATACAAGCTACACACCTCCGTTTTCTTTCACGCACGTTTGTTTCTTGGTACACACCTCTATTTCT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTTCTGAGATAGGAAGTGGAAGTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 4 3840270-3852650 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062698.1 Anthocerotibacter panamensis C109 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================= ================== 3840270 37 100.0 39 ..................................... CAATCCTGACGCTCCCGCCCTTCATGCCCCGATTGAAAC 3840346 37 100.0 35 ..................................... TCTCACCCTGGGTCGCAGCAACCTCGACCAGCAGG 3840418 37 100.0 36 ..................................... TGTGCAGCTCACTAGCCCTGGCCTCGGGGGCTATGT 3840491 37 100.0 38 ..................................... ACGGACACCCTGAGCGCCACGGACATCAAGAAGAAGAT 3840566 37 100.0 34 ..................................... CAGCGCTTCACAATTGGGCCGCCTCAACAAATTG 3840637 37 100.0 34 ..................................... AATATAACGTGTCAGATCCTCTTAGCCTAGCAAG 3840708 37 100.0 37 ..................................... ATGGTACCGTGCAGGAGCGCTGAATCTATCAAGGATG 3840782 37 100.0 37 ..................................... TCGTTGGTATCAGCCTGAGCGGCTGGCAGTGGATCAA 3840856 37 100.0 35 ..................................... CAGGATTTTCAGGGCTTTAAGCCAAGCCCTAGGAT 3840928 37 100.0 36 ..................................... GGGAGCAGGCCGTTACCGCTACCTAGGCATATTGAT 3841001 37 100.0 38 ..................................... TTTCAGCGCTCTAAATTTCTGGAGATTGATTTAACCAG 3841076 37 100.0 35 ..................................... TCCCCCAAACTTCGGGTAGATCCGCCAATTGCATT 3841148 37 100.0 34 ..................................... CTGGTATCGTAATCCTGGACCCCATAGGCACCGA 3841219 37 100.0 37 ..................................... CGCAGTATCAGGAAGGAAATGATTTTGGAGGATCTGG 3841293 37 100.0 35 ..................................... AGGGAGATAATCTGGAAAATACAGATCCCCCATCT 3841365 37 100.0 37 ..................................... AGTTAATCGAGAGCATAGGAGAAAGGTATCTCCCTCT 3841439 37 100.0 37 ..................................... TGGGTAGTGTCTAGTCCGTGCCAGGGCACGATCCAGT 3841513 37 100.0 34 ..................................... GCCTATGAGGAGTTACTCCAGGCATTGGAAGTTA 3841584 37 100.0 34 ..................................... GTGAGTTCCTAAGGTAAAACTTTCTAGCCGGACG 3841655 37 100.0 35 ..................................... CCGGGCTGCCTCTCCTGGTCCATCAGTTCAGCCGG 3841727 37 100.0 36 ..................................... AACTGAGCTTACTGAGGAGGCGCTAGCTATTGACGA 3841800 37 100.0 34 ..................................... AGCCGGTCTGGATGCTCTCCAATCCTGAAGTTAG 3841871 37 100.0 42 ..................................... ATGGAAATTGGCTCCCCAGCGGATTTCCACCGGTCGCGCGCG 3841950 37 100.0 34 ..................................... GATCTCGTGGGGGGACAATCGCAGGAGCCAGCAC 3842021 37 100.0 35 ..................................... TCTGACACTCGCTACCCCAACGCTCCCCCGATTAT 3842093 37 100.0 35 ..................................... ACTTTGGGCGCTAATAATTTAGCGCAGACCAGCCC 3842165 37 100.0 37 ..................................... TGCCGATGGGCAGACCGTCCAGCGCATGAATCTGCTC 3842239 37 100.0 46 ..................................... AGTCTAAACGGCAGCACTGCAACCGTCACAGGATCGACCGCTACGA 3842322 37 100.0 36 ..................................... CGCCACTTTTTGATAGATAGCTTTGCGCGAATTCCA 3842395 37 100.0 34 ..................................... AGCTAATGACCCCCATGCCTCTGCCCCAGCGCGA 3842466 37 100.0 38 ..................................... CCTTGGATCGCATACGTGTTGGGGTCGGGGTCAAGATC 3842541 37 100.0 38 ..................................... ATTGCCGCTGCTTGGCGGCCCTGCGATGGCTTGGGCGT 3842616 37 100.0 34 ..................................... CTCTACACTCAATACCTGTGGGATGTGCCATTTG 3842687 37 100.0 36 ..................................... AATACGCCTCCTGCTCTTGTGCGTTTTGTTTGGCTG 3842760 37 100.0 39 ..................................... CTGCCACTCCTACTCGTAAAGGGGAGGCTCCCGTGGCTG 3842836 37 100.0 34 ..................................... CAATTCCCCTCCACCCCCAAAGGAAAGGTGCTAC 3842907 37 100.0 38 ..................................... ACATCATTAGTAGCGGGCTGACCCCAATCCTGGCGAAT 3842982 37 100.0 39 ..................................... ACAGTTACCGAAGCGGGTGGCTCAATCGTGATTGTGGAC 3843058 37 100.0 37 ..................................... CGAGTACCGGAGGGGAGCCGCTGGACCGGGTTATTAG 3843132 37 100.0 37 ..................................... CGCATGTAGATCCTGGTACGGGATCTGCAATGCGGCG 3843206 37 100.0 31 ..................................... TCGTAGATAAACGCCCCCCCGCTGCTGCCCT 3843274 37 100.0 38 ..................................... CGCGCCATGATCCAAGCATGGCAGCAAAAACAAAAAAA 3843349 37 100.0 35 ..................................... CACCGCCAGCCGGGACCAGATCCTGGCACTCTGGC 3843421 37 100.0 39 ..................................... CTTACGGCTGGGGGGCAGCCCGAGAGTTTGCACTAGGGG 3843497 37 100.0 40 ..................................... TACGAGCGCGTCAGCACTCGCAATCGCATTTTGAAAAGCG 3843574 37 100.0 36 ..................................... AGAGCGGGCATCGGTATTAATTGATTGGCTGGGGTA 3843647 37 100.0 34 ..................................... AAATTTAATCGTGTGGGTATCCACGGATACCAGT 3843718 37 100.0 41 ..................................... CCTGAGATTGGCGAGGAGCGCACTGGCGGAGGCAAACGGGG 3843796 37 100.0 34 ..................................... ACTAAGTACTTCATTAATCAACTCCTTCCTCTGT 3843867 37 100.0 37 ..................................... CATCAGAAATAGAAAAGCCTCTGTTAGTGCTCCTGTT 3843941 37 100.0 40 ..................................... GATTGAGCAGCTCAAGCAGGTTCTGGTTACTGTCTTGCGG 3844018 37 100.0 35 ..................................... TCCCGGAGACAGATAGGCCATACTAGATATGTACT 3844090 37 100.0 39 ..................................... TACCAGTGCTCCAATATCGCCTACCACAAATTCCCGCAA 3844166 37 100.0 36 ..................................... ACGGCTTATTGAGCTTTTGAGGGATTTTATCGAAAT 3844239 37 100.0 38 ..................................... CAGGGTTGTCCCAATCGGGAACCCTGTAGTGGTTCCCG 3844314 37 100.0 33 ..................................... AGCGGGCTCTGAATTGAGCGATGCTGGTCTACG 3844384 37 100.0 33 ..................................... GGATCACTGGGGCGAGAGACTGGCCTAGTGCTA 3844454 37 100.0 35 ..................................... AGAGCCACTTTTGAGATTACTAATGGGGCTACCGA 3844526 37 100.0 32 ..................................... GCCCAAAGGATTTAACTCGACCGGGGAGGGTG 3844595 37 100.0 40 ..................................... GCCCCAATACGCCGCGTGGAAAGCAAAACGGGGCTACAGT 3844672 37 100.0 39 ..................................... GCACCCGATACTGCTGCAATATTGTTGAGCGTCCCTTCA 3844748 37 100.0 35 ..................................... ATGTCGCAAAGGGTGAGGGGCTTAAGAAGCGCTGG 3844820 37 100.0 34 ..................................... AGCGGACTGACTCCTGCCCTGAAGCCATTCTCGA 3844891 37 100.0 36 ..................................... CTCCCCTAGGCAGAGATGCCGCCCTGCCACCCGAGG 3844964 37 100.0 38 ..................................... GAACCAAGGCGGCGGCGGGGCCGTGATGCCCACGCTAA 3845039 37 100.0 38 ..................................... GCTTGGCTACTGCTGGGGCTCGAAGCCCAACATTAGCG 3845114 37 100.0 36 ..................................... CAGCGTGTGAGCCATGGTGCCTGTCTCAACGAATTC 3845187 37 100.0 37 ..................................... CCGCCCAATCTCAATGATGTCGGCAGCCGCCCGGTTT 3845261 37 100.0 55 ..................................... CCAAACTGGACAATCAGAGGCCAAGTCGCGGCACCGCCGTTGGTGCTGCCAAACA 3845353 37 100.0 36 ..................................... TAACGATTGGGCACGATTGACCGGCCTGCGCCCAGA 3845426 37 100.0 40 ..................................... ATAAGTGGTGCAACAATTGCTACTCTGTCCGCGAACTACC 3845503 37 100.0 34 ..................................... CGTAGGGTACGGCGGCCCTGATAAATATTCTCTT 3845574 37 100.0 34 ..................................... ATGGGGGTTAGCGGCGGACCCGACAAATTGTCGC 3845645 37 100.0 39 ..................................... ACCTCTTTGGCTCAGGTGGCCGCGCTGTCTGGGAGCCGA 3845721 37 100.0 35 ..................................... CTCTATACCCAATACCTGTGGGATGTGCCATTTGT 3845793 37 100.0 34 ..................................... TTTTCGACCGGAAACTGAAGCCTTTGTGGACGAG 3845864 37 100.0 34 ..................................... CGACTTTAGGACTAGCCATTTATTAGGATTGGCG 3845935 37 100.0 35 ..................................... ATCAGTGGGAACGCCTCCATCACGCTGAGTAATGT 3846007 37 100.0 40 ..................................... TTGAAGTGGCTAAGGTGCAGCAGGAAATCACCGATGCTAG 3846084 37 100.0 35 ..................................... GCATTCAGTTTGCTGCTATTCCTAATTGTTGTGAA 3846156 37 100.0 34 ..................................... ATCCTCAGTAATTGCATCAGATGACAAAAACCCT 3846227 37 100.0 39 ..................................... AGGAAATCGGATTATCATTGCCAGTAGTTTGTATCAAGT 3846303 37 100.0 37 ..................................... GCTGATCGAACTGGAGCTGCTGTTTTTGCAGGTTGTA 3846377 37 100.0 36 ..................................... CACGTATTTCTTACCTCTATGGCCCCGCGCCACACC 3846450 37 100.0 37 ..................................... CGCTCAACAGTCTGCCCGCCAGCTCGCCCAACAACTA 3846524 37 100.0 38 ..................................... AATTGATTTACTGCATCAAGGGTGACATGAGGGCTGGG 3846599 37 100.0 35 ..................................... CACGCAAATTCGTGGATAGCCTTGATCATGGTCGC 3846671 37 100.0 35 ..................................... AGTCCTCACCATCCACAGCCCTGGAACCCCTTCCT 3846743 37 100.0 37 ..................................... GCTGTACAAAAAAACAGACTGAGAAGCCCGAAGATCT 3846817 37 100.0 38 ..................................... GTAGGGAATTCAAACAATACGAGCGAGGGCATCAGAAG 3846892 37 100.0 37 ..................................... CGACGAGACCGATGTAACCAGCATCCGCCTTACCCTG 3846966 37 100.0 36 ..................................... GGTAGTGACCCCTGCGGCTGGGACACCACGGGGGAA 3847039 37 100.0 32 ..................................... TTTGAGGTTGTCCCCGACCAATCGAGTCCCAG 3847108 37 97.3 37 ...T................................. CGTTTAAGCGTGCTGCTAACGCTTTCGCATCAGCACA 3847182 37 100.0 34 ..................................... CCCTGGACAAACTAGTTGAAGCCTTCTGTGCAGT 3847253 37 100.0 37 ..................................... AGTTCGCAATGGGCTAGATCTGAGAACACTGATCGCC 3847327 37 100.0 38 ..................................... CCAGGGTATTGTCCACTGGAAAAAAGTCAATTGTGAAA 3847402 37 100.0 40 ..................................... GAGGAGTCGCAGTGCTTGTTCTCGGGCATGGTGCAAGCGG 3847479 37 100.0 36 ..................................... CAGGCAAAAAACGGGGGCAAGTCGCCCGCCCTGACC 3847552 37 100.0 39 ..................................... CGCTACCGCGCTTGCTTGGCTTGCAGACAAATTGAAGCC 3847628 37 100.0 36 ..................................... CAGAGCGAAACTACGACCACCCGGACGACCCGCAGC 3847701 37 100.0 37 ..................................... ATCTATGCCTCTGCTTCAGGTAGCGCCCGCTGGTGTT 3847775 37 100.0 38 ..................................... AAAAGTGGGGTCTGATTGGGTGACGTTCCCACCCTCAG 3847850 37 100.0 32 ..................................... CAACTCATCGCCCTGGAGGTTGCCACTGCTGG 3847919 37 100.0 36 ..................................... GCCTTGCTGAGCATTTTGAGCACCGTGGGGACGATC 3847992 37 100.0 39 ..................................... ATAGGCATACGTGGTAGTACACCCAATGGTGCACCCCGT 3848068 37 100.0 37 ..................................... CCTATGGGGGTGGCTATGGCTATTGACCCGACCACCT 3848142 37 100.0 34 ..................................... TATTCCTGGAAGAAACCTCCTCTTCCTCGTCCTG 3848213 37 100.0 34 ..................................... ATGCCGTCATTGCCTTGGATAGTGCGGGGCGGCT 3848284 37 100.0 35 ..................................... CTGGGCCTTGACGACCCCAGGCAAACCCCTAACCG 3848356 37 100.0 35 ..................................... AAAATGGCGACCACAATATCAGTAGGGGAGACGTT 3848428 37 100.0 37 ..................................... AGCGCCGCCCTCCGTACGCCCCCCAGAGAGCAGCGGG 3848502 37 100.0 33 ..................................... AAGTTCAATGGTATCTCGGCCTCTAATCCGTCG 3848572 37 100.0 36 ..................................... GTGGTGAGCTCCTGCAGCTTCGTTTCGAGCGCTGTA 3848645 37 100.0 36 ..................................... CGGCTCAAGAAGCGCCAACCAACCGTATTGACCGCG 3848718 37 100.0 35 ..................................... CCAGAGAATGGGCCTACGCCCAACTGGGCTACGGA 3848790 37 100.0 39 ..................................... AGCGACCCCGGCTGGGAGATTGACCGACACGAAAGAGCC 3848866 37 100.0 35 ..................................... GCGCGAATTCGTAGTAGGGGATATTGGAGCGTTAG 3848938 37 100.0 34 ..................................... TGAATTAACGATCGAATCGATTTATGCGGGTGAG 3849009 37 100.0 36 ..................................... TAGGGGTGTGCAGCTATGCGATTTCTACCAATCCCT 3849082 37 100.0 45 ..................................... CTGAGTTTTGCTGAAGACTGCGGAGGCGTAAGCCCGGTTGAGCGC 3849164 37 100.0 38 ..................................... GAGGAGATAACGATGGCGGATTTAGCCCAGTACCGGGT 3849239 37 100.0 36 ..................................... TATCGATTACCCCTGAGAGTGCCGACTGAAACGAGT 3849312 37 100.0 40 ..................................... AGGCAACTTGAATATAAGTGCGATTGGTATGGTCGCACTT 3849389 37 100.0 38 ..................................... CCAGCAGGTGGAGCTTGGGCATCGTCCCCGTTTTTTTG 3849464 37 100.0 37 ..................................... GGTGACACCATTACTTTTGTTGAGGCAGGAGCCCCGG 3849538 37 100.0 38 ..................................... AGCCCTGCTTAGGTGTGCCCCGATGAGATTGGCTCCAT 3849613 37 100.0 38 ..................................... TTTCCATCGGGTGCGCTGGGCATCGAGGGGCGAACGGG 3849688 37 100.0 35 ..................................... GCGGGAGAAGATTATATAGACCTCGCCTCAAAGAA 3849760 37 100.0 38 ..................................... ACGGTGCAAAAAAAATTGGTCCTGCGCCCAACCAGCCA 3849835 37 100.0 40 ..................................... ACGTTATGGTCACCAGCAACCAGCGATGGCTAAATAAGTT 3849912 37 100.0 33 ..................................... GGATCAGGCCACGTCCGCGAAACCTGAGCCCAT 3849982 37 100.0 37 ..................................... CACCGGCGCATAAACTGCTCTTTATACCACTCAGACT 3850056 37 100.0 38 ..................................... GAACGAACGAGGTGAACTGAAACCGATAAGCCCGAGAG 3850131 37 100.0 37 ..................................... GTAGTCATGGCGACTGCCGTACCCTGACGACTCATTA 3850205 37 100.0 44 ..................................... TGATACAAACCAGGCGTACGCGTCCCAGATATGGCGGGACAGAT 3850286 37 100.0 36 ..................................... TTAGGGCTTGGCTAGAGCTGTACCCCGCGCGATTTG 3850359 37 100.0 35 ..................................... TGATATGCACTTTGTAACAAGACTTAAAAATGGGA 3850431 37 100.0 35 ..................................... TGGCGATGTGAGTACAACTGCTCGCCAGGAGCGGG 3850503 37 100.0 36 ..................................... GGTATTCTACGCCAACCTGCTCTAGGATACTTGCCC 3850576 37 100.0 35 ..................................... TGGGAGAATGCCCCAGATAGCCAGCGGTATCAAAC 3850648 37 100.0 38 ..................................... GGGGTCGGGGCTGAAATCCAAGATGTCATTGGGCGTTA 3850723 37 100.0 38 ..................................... GGATCGGCTTGGCGAGATCGGCCAGGATCTCGGCGTAG 3850798 37 100.0 37 ..................................... CGGTGGCATGGGCATAGCAGTCTCTCCAAAGGTGAGT 3850872 37 100.0 40 ..................................... AAGAGCGGTAAAATGTGAACAGTTCTGGCATATCATCGGA 3850949 37 100.0 37 ..................................... CTATTGCTGCGCAAAGCCGCTTAGAGAATCTGACACC 3851023 37 100.0 34 ..................................... AGGTAGCCCTGTGCTTCCTTGCCCGCGCTCTTGA 3851094 37 100.0 37 ..................................... TATTTTTTCAGGAACGGGCGCTCAAAAGCCAGATGGA 3851168 37 100.0 39 ..................................... GATGTGCAGGACGACCGCCTGGAGGTATCGGTGTGGGCA 3851244 37 100.0 33 ..................................... GCGGGCCAGTTGCTGTGACCGCCTGCGCAGAAT 3851314 37 100.0 36 ..................................... ATGATGACTTCGCGCATCAAAGCAGGTGATAGCGGC 3851387 37 100.0 35 ..................................... GTCGCACACGCAGCAGGACGGGCCGTAGATAGCGT 3851459 37 100.0 34 ..................................... CAGTGTTTGAGCAAGAGCTTTACACCTACTTTGC 3851530 37 100.0 32 ..................................... TCCGTGACGGGAGCTTGTGGGGTCACGTTCCC 3851599 37 100.0 35 ..................................... GTCACGTCTGATAGGGCAGCAAGCTCTAGCGATGT 3851671 37 100.0 35 ..................................... GCAAGAAAGAAGGAGATTTAAAATGTCATTAATTG 3851743 37 100.0 34 ..................................... CTCATCATGGACAGGCGCGTGAAATTTCCCACCG 3851814 37 100.0 35 ..................................... CATGTGCTTCTCGACTACTTCACGCGCCTTGTCGA 3851886 37 100.0 38 ..................................... CTGGCCTTCATCCGGGATATCAAGCAACTCGAGCAAGG 3851961 37 100.0 35 ..................................... CCACTATTACAGTAGTGGGTTGTGCTCTTTCAGCC 3852033 37 100.0 34 ..................................... CGAACTCGGCCAACCCAGCCATGAGCGTGGCAAA 3852104 37 100.0 37 ..................................... ATCCATGTGCCGATTTGGCATGTGGCTGTGGGCGCGC 3852178 37 100.0 36 ..................................... TTGACGTGTCAGCAGCACTTGCTCCCCGGACGACCC 3852251 37 100.0 34 ..................................... TCTGGCACAATCGCCCTTGGGTGTGGGGCAGGAG 3852322 37 100.0 36 ..................................... CAATAACGTACAGTATGAGAGCAGGGATTGCAGCAT 3852395 37 97.3 34 ...........................T......... AGTTTTTTTGGCTGTATCACACACTGGCCGTGAG 3852466 37 100.0 37 ..................................... CCCTGCTGCATAAGCAGCACTGGCGCTGGCCGCTTCA 3852540 37 100.0 37 ..................................... TTTATGGGTGCCAGAGTGACATACTCCCGACGCTCAT 3852614 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================================= ================== 169 37 100.0 36 GTTCCAATTGGAGAGTTTCCCTTTTAGGGATTGAAAC # Left flank : AAAGCTGAGAGGTAGGTATTTAAGGCTGAGAGGTAGGTATTTAAGGCTGAGAGGTAGGTATTTAAAGCTGAGAGGTAGGTATTTAAGGCTGAGAGGTAGGTATTTAAGGCTAAAGGGTAGGTATTTAAAGCTGAGAGGTAGGTATTTAAGGCTAAAGGGTAGGTATTTAAAGCTGAGAGGTAGACATTTAAGGTTTTTCAACCTAGGAGCACTCCTTGGTACTTCTTCAATCGAGGTTTGGGCGGTTACAGTGCGCGAAAGGGTAGCTGTGGATTTTCCACGCGCTCTTTCGATGGCTGAATCCCCTTCCTGGCAAACCTTTGGGCCATTTTGGAACCCCAAGAAGTTCGCGCAAATGCTGAAATGCCTACCTGGAGCGAGTTTCACCTTCTTCCAACTGTTGATAGTTACCCTACCCTATCGCCCTAAATCAAATTTCTGCTATAATTCGCGCAACCGCTCCTTGAAAACCGCATACAGTCAGGCTTCTAGCCCCCGCG # Right flank : CTTTTTCGCTTCATAAATAACACTAGGGAATATAGCAAACCTGACTGGTTTGTGAAACGTCCCCGCCCTACCCCAATGGGCACAAGCAATTACCTGTCCTGCGTAGGGGGATGGGGAGCCTGAGCCAATAGCCCTAGTTTTGCTCCCCTCCCCTATAGCGCTAACGTGCCGATAGCGTAGCTAGGTTATGTTGGGGGAGGGGTTGGGAGCTTTTATGGCTCAAAGAGGCTTGCTATAGCTAAGTTTGCCAAGTATTTGCGGCATCATTAGCCTAAGCGGAAGAAGCATGTAATCTTGAAAAGGAAGTGAAGAGTGATTCCCGATCGTGTAGAGATTGAGGAACGTCCAGCGATTGCTAATGCTAAAATAGAATGATACGGCAGTTTCTTTCCAAAAAAATAACTTCAAATCTATAAAAAAAGAGAAACTAGAATGGGCTGTTAATCTGATGGATCAGCGAGCTTGAAAATGCCTTGACTACAAAACACTTCATGAGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTGGAGAGTTTCCCTTTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 5 4019231-4013268 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062698.1 Anthocerotibacter panamensis C109 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 4019230 29 100.0 32 ............................. TCGCCCGCCCTGACCCGCTCCACAATCTCAAC 4019169 29 100.0 32 ............................. TTTCAGTAGCCCGCCAACCATCTCGCAAGATA 4019108 29 100.0 32 ............................. TATCATGTCCAGAGTATACCCTACCTGTAGAT 4019047 29 100.0 32 ............................. GCAGCCCCCGCCTTAACCCCATCCGCACATAA 4018986 29 100.0 32 ............................. AGACTAGGTGCTCACGGAGGGAAGGCCCCCCG 4018925 29 100.0 32 ............................. GCGGTTTGGTTAGTCGCTGTCGCACTACCTGT 4018864 29 100.0 32 ............................. GCTACATATTCCTGATCGCTTTTGCGTCGGGG 4018803 29 100.0 32 ............................. GTTATGAGTTAAGTCACACTGCCGCCCCATAC 4018742 29 100.0 31 ............................. GCAAGGGCAATGTGCTCGATTGGGCGAAAGC 4018681 29 100.0 32 ............................. TAGGGCGGCGCGTTTGATGGCATTAGCAAAAC 4018620 29 100.0 32 ............................. ACTTGGCAGAGGCATTTGCAGCCTTGCAGGGT 4018559 29 100.0 32 ............................. CCTGACTCTCCCAGTTTTCCGACGGTTTAAGG 4018498 29 100.0 32 ............................. TTTTCGCCCTCTGGTGAACTCTTCCAAAACCG 4018437 29 100.0 32 ............................. TCCCAGCGTAGTGAGTTTTGCCCCACTTGCAG 4018376 29 100.0 32 ............................. AGAATAGGGTTAGCGCCTGCGTCAATTGAAGC 4018315 29 100.0 32 ............................. CCTGCGGTGATGCCAAAATGTGCGCCGACATG 4018254 29 100.0 32 ............................. CCGGGACCGCCTCTACCTCCGAGGCACTTTCC 4018193 29 100.0 32 ............................. GTATTTGCTCACCACGGGGTGCTTCTGCCAAA 4018132 29 100.0 32 ............................. TGGACGGGGCGTAATGATTTATGTCCCGGCTG 4018071 29 100.0 32 ............................. TTGGCGGGGTGGATGCAGCATTTACAATCACC 4018010 29 100.0 32 ............................. ACCCCGCTAACTGCTGGTCGCTGAACGCCAGA 4017949 29 100.0 32 ............................. CGAGCGGGCCACAGAGTCAGAGGTCGTATCCC 4017888 29 100.0 32 ............................. ACAGCACACGGAATACTATCAATGCAGCCACG 4017827 29 100.0 32 ............................. CGGCCCCTGAAGCCGCTCCCAGTACCTTTATC 4017766 29 100.0 32 ............................. TGTTTCCGTCTCTGTCTTTACCGGCATACATC 4017705 29 100.0 32 ............................. CAGGCAGCCATCAAGCGCTACGAATTTTTAAA 4017644 29 100.0 32 ............................. TAAGCGCGGGGGACTTGGGTTAGTGTCTGGAG 4017583 29 100.0 33 ............................. CAGCAAAGCTCAGGGGCATCTAGCCCCGTCGCC 4017521 29 100.0 32 ............................. CGTAGACCGCGTACCGTTGAGATTCGCCCCCC 4017460 29 100.0 31 ............................. GCTTCGAGCGCTGCGGGTGCTCAACGCCGCC 4017399 29 100.0 32 ............................. GGTTCCCACTGCCGGACTACCAATTGTATGCA 4017338 29 100.0 33 ............................. CCTACGCGGTTTTACGCGCAACGCCTACCCTAC 4017276 29 100.0 32 ............................. CCCAAGCGCTAGGTTATTTCGCTGTTTCTCCA 4017215 29 100.0 32 ............................. TTGGTTGCAAATCAAATTAAGGGTCAATTTTC 4017154 29 100.0 32 ............................. TTTGCCGTTCCGGGTCCAGTCCAGATGCTAAA 4017093 29 100.0 32 ............................. TAGAGCCGGTGGTTTTTCAAGAGCCGGGTATC 4017032 29 100.0 32 ............................. ACTGCGAAGGGCGGTGGCTTCTCGGAAGTGCC 4016971 29 100.0 32 ............................. GATGCGACCATCGCATACCTGTGGGCCTGCCA 4016910 29 100.0 32 ............................. ACAGGTCAGAGATGAATGTAGTTTTTATCCAC 4016849 29 100.0 32 ............................. TAGGCCCTCCTTAAAAGGGCGGGGGGTATCAA 4016788 29 100.0 32 ............................. ACGATGATGTGACGACTCCCGACGCTGACTTG 4016727 29 100.0 32 ............................. CGTCGTATTAAGCGAGGTCACAGCGTCCTCGA 4016666 29 100.0 32 ............................. TTGTCGATTTGGTCATGACCCAGGACGCCTAC 4016605 29 100.0 32 ............................. GACAATCTCCCTCAGACGGGTTTTGCGGTTGC 4016544 29 100.0 33 ............................. GACTCTAGAAGCCGAGCGCGACACGCTGGAGGC 4016482 29 100.0 32 ............................. ACTTCGACCGCTTGCATTTGCCGCTTGAAGTC 4016421 29 100.0 32 ............................. TCCTCCGGCAGATCGATGAGGGTGGTTTGGGG 4016360 29 96.6 32 ............................T TTTCACGGGCGTCCCTCCAGACAGCCAACCAA 4016299 29 100.0 32 ............................. CTGACACCAACGAAACCCGCGCTGTGACCCTG 4016238 29 100.0 33 ............................. GCAAACCATGAGTATGCAGCTTTTGCAGCACTC 4016176 29 100.0 32 ............................. TACCACAATATGCCGCGCTCTCTGCTGGCTGG 4016115 29 100.0 33 ............................. AAAAACCCCCTTGCTCATGCAGGGGGTGACGGA 4016053 29 100.0 32 ............................. CTGACGGCGCTGGTCGTCCAGGGCTGCGGGCA 4015992 29 100.0 32 ............................. TAATGCTCTCTGGGGTGGTGCGCATTCCAGGG 4015931 29 100.0 32 ............................. GACAAGGAGCAGGTGCCCCTCAGATTAAAAGT 4015870 29 100.0 32 ............................. TCAAGCTTTAACCTGGAGGCCGTTCTCACCGC 4015809 29 100.0 32 ............................. GAGCCGCCCGCCGTCGTGGAGACAAACCTACC 4015748 29 100.0 32 ............................. ATCAGTGCTGTAGTAGGCAAGCCTTGGGACTA 4015687 29 100.0 32 ............................. CCTGAAACGTACCAAATCAATGGGGGTCTGAC 4015626 29 100.0 32 ............................. TCACGCTGACCGCTGTCGGAGCGGGCGCAACG 4015565 29 100.0 32 ............................. GCTTGCCAGTGTTGTACCCGCGCCAAACCTCG 4015504 29 100.0 33 ............................. AAAGCGTGTCCCTAGATGAACTCAAGGACATCC 4015442 29 100.0 33 ............................. CCGTCCAAGGCGTCGGCGGCATAGTACTCGGAG 4015380 29 100.0 32 ............................. GGTGCTGCCCGCCACGAGCCCGCCTGCGGCCC 4015319 29 100.0 33 ............................. AAGGGGGCAAACAAAACACCCAAAACACCGCCC 4015257 29 100.0 32 ............................. TAGTTTGGGAGCTTTGCGCTCCTGGACTGTTA 4015196 29 100.0 39 ............................. GTGACTTGGCTAAGGCCGCCTTCGCGGCGGGCGAAGAAG 4015128 29 96.6 32 ............................C TCCCCTCGCCGCCTTGGTCCTCCCCCTAGAGC 4015067 29 100.0 32 ............................. GGCTGATCTCGCTCGAATTCACCCCTGTTTAC 4015006 29 100.0 32 ............................. TGATAGCGGTCGGGGTCACCTCGGCACACTAC 4014945 29 100.0 32 ............................. GGCAAGAGGCAGTGTTCAGTTTCAGTGCGCGC 4014884 29 100.0 32 ............................. TTGGCTATTGGAAAAACGGAAGCAGATCGCAC 4014823 29 100.0 32 ............................. GGTAGAAGCGCAGTCGGTTGTACTGACCCTGC 4014762 29 100.0 32 ............................. TTGAGCAGGCGGAGCTTGAGCTAGCGCGGGGC 4014701 29 100.0 32 ............................. TGGTCGTGATACTGTAAGCGGTCCCACTGCCG 4014640 29 100.0 32 ............................. ATAAGAACTTTAACATTGCTCGTTTTTCGGTT 4014579 29 100.0 32 ............................. CGGTCAATTCTGTCAGCCTGTTTTTTCTGATA 4014518 29 100.0 33 ............................. TCGGCGATAGAGGTTTTGAACCCATATCAAATC 4014456 29 100.0 32 ............................. AGGTTATTAGCGAGCTTGCTCTTCTACGGACA 4014395 29 100.0 32 ............................. ATTGTCCCTGCCAATCTGGCAGAGTACTATCG 4014334 29 100.0 31 ............................. GCAATCGGATCGAGGGGCACTCCCTGAAGGA 4014273 29 100.0 32 ............................. GGTAATTGCGTCTTAGCCCTATGCTTGAAATG 4014212 29 100.0 32 ............................. ATCTCGGCAGCTCGCCTCCCAGCGACCGAAAC 4014151 29 100.0 32 ............................. TTGCAGCGCGGCTTCTGCCGCCCGACCCTCCC 4014090 29 100.0 32 ............................. GGGACTATCTTATAGCTGTCTGTTGCTCTGAT 4014029 29 100.0 32 ............................. TCCCTCGGCTGTCATGCTCTGGGTCCAGATAA 4013968 29 100.0 32 ............................. CTGATCATTGCTCAGCTCATAGCCCAAAGGTC 4013907 29 96.6 32 ............................A ATACTCCCTGTGGCATCGAAGCGGATAAGGGG 4013846 29 89.7 32 ..........................GTA TTTAGCATCTGGACTGGACCCGGAACGGCAGG 4013785 29 100.0 32 ............................. AAGCAAATCTCAGCAGGGCAAATCTCAGCAGA 4013724 29 100.0 32 ............................. AAGTCCCCTCCGCACTCTCGTCCCTCCTGTAC 4013663 29 100.0 32 ............................. GCAGGCTGAGCAGATCAGCTACTCTGATTTGG 4013602 29 96.6 32 ............................T TCTTACTCCTTAAATTCCAAGATTGGTAAATC 4013541 29 100.0 33 ............................. GGACCGATCTGAGCGGGGCGGACCTCATAGGGG 4013479 29 100.0 31 ............................. GCGTCTTGAGCGCCTAGAGCAGGAAGAGTAC 4013418 29 100.0 32 ............................. TAGCCCGCCTTGTGGTTACCTATAGTGAACAA 4013357 29 100.0 32 ............................. GCGAGAGGCACCTTCTCCCCCCGGCGCTTGAG 4013296 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 98 29 99.8 32 GCTGTCCCCACGGGCGTGGGGGTGATCCG # Left flank : TGCCTGCCGTGATGCGTTTCATGAACATCGGCTGCTGGCACGAGTGGTTGAGGATATTGACCGTTTACTGGCCGTGGATGGGGCAAGTTTACAACCAGGCCAATCACTACTGGATTTGCATGATGCGATGCCAGGGGGACTATGGGACCCAGAATCTGGAAATGTTTCGGGTGGAGTAAACTGGTCTGAACCTATCCCGGAGGGATGAATGGTTGTTTTTATTCTGGAGAAAGTGCCCGCTTCTGTGCGGGGTGAACTTAGTCGCTGGCTCCTGGAATTGCGCCCTGGTGTTTTTGTGGGCAAGGTCTCGGCTCTGGTCCGGGATGAGCTATGGACATTCCTCATACCAAAACTAAAGGGTGGGTCTGCTGTACTGATTTACCCAACCAATAATGAGCAGGGTTTTGCCTTCCGTAGTGAGGGGAATCCTGGCCGGACCCTTCGAGACTTCGAAGGCCTTTTCTTGATCTCGATCCAGTAAATACAATGGTTTCGTTAGT # Right flank : CCACGGGGAGATGATGGACCGGCTCACGGACACCTGGAAGCAGATGAGAGGGTAAAATCTCCTCAAGGGGCCTTTGACAACGGGGGTCCAGGAGATGAGAAATGACCGAGCAAGAAGTCCTACAGCTTATCGCCTCTAATGCTCAGGGCATAGCTGAACTCAGAGCGCTGACCACAGCTAACACCCAGGCTATCCAGGCTAATGCCCAGGCGATTGGGGATCTGCGGGCCTCCATCAATGATTTAAGAGAGGGGCAGGCCATCCTTTTGGAAGGTCAGCAACTCTTGGCCCAACGCTTTGCTGAAGAGCAGGACCGCCGCGAGGAGATGCGCCAAGAGATGACCACCATGCAGCGACAAGTGCTCTCTATTCAGCAGGATGTCCGGGAGATGCAGCAGGATGTCCGGGAGATGCAGTCTGAGGTTCGCGGTCTTCAAACCCAGGCAAACCGCATCATTGAGCGCATGGACCGGCGCGACCGGGGCGAGCGCGAAGAATAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTCCCCACGGGCGTGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //