Array 1 1147-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_NROB01000112.1 Cronobacter dublinensis strain cro981C2 contig112, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1146 28 100.0 32 ............................ GCCTCCTGGTCTTCCCCGTAAAGCATCACCCA 1086 28 100.0 32 ............................ TCCCTCCGCGCGTTTCGCGCAACCGTTACAGC 1026 28 100.0 33 ............................ AACTATTGCCAGGAGGTTTTATGACGCGCCAGT 965 28 100.0 32 ............................ GCAATTATCGACGAACATCGCGCGCTGTCCGG 905 28 100.0 33 ............................ TACTCGCCAGCCAGCGTAAAAAACGCCGTGGAC 844 28 100.0 32 ............................ TTCGCCGCGATAGAGAGAAAAACAGGACGTTT 784 28 100.0 32 ............................ TCGTTGTAGTAGCGTGCGCCAGCATCGATAAA 724 28 100.0 32 ............................ GTATTGGGACGGCAAAAGGCGAGGCCGAATTG 664 28 85.7 29 ......................A.ATC. TCAATCGGGAGATGGATCCGGTCGTCATA 607 28 100.0 32 ............................ GCCTGTAGATGCTGGCGTAGATCCGGCAGGAA 547 28 100.0 32 ............................ TCACCCTCTATCGCCTCGCCTTCACCGGTTAT 487 28 100.0 32 ............................ TCGGCAGCTCCGGCTTTATTGCCGTCCCGGAC 427 28 100.0 32 ............................ TGGGCCGCTTTTGTGTCGCGAGAGAACACGCC 367 28 100.0 33 ............................ CAGTCGGCGCATCCTTCACCCGCCAAGCAAATA 306 28 100.0 32 ............................ AGCCCGTCAGCGTGCCGAACGTGTTCCAGTTG 246 28 100.0 32 ............................ AATGCACGAGGACGAATACGTCTGCTACGTGT 186 28 100.0 32 ............................ TGCAGAGGCTCTGCCGATTGCGGCTCCTCTTC 126 28 100.0 33 ............................ GGACGGAACGACAAGCCGCGCGCAGGATCTGAA 65 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCAGCATTTTGCTCTCCAGGATAG # Right flank : AAAAAAGACGGGCGCTATACGATAGGCGAGTGTTCACT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [31.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 89286-89134 **** Predicted by CRISPRDetect 2.4 *** >NZ_NROB01000005.1 Cronobacter dublinensis strain cro981C2 contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 89285 29 96.6 32 .C........................... ATGGCTGAAAATATCAAATTCGATGAACGCCT A [89281] 89223 29 100.0 32 ............................. CTGCGTTTGAGAGGAGTTATACAGAGACTCAG 89162 29 79.3 0 ....................A.GTG.A.C | ========== ====== ====== ====== ============================= ================================ ================== 3 29 92.0 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGACTCAGGTCACGCCGTCCTCCGCCGTTCCGGCGCCGACCACGTACTAAGCCTGCCACAGCGTCTCTTCGGAGGCGCTTTTTAGTAGCGCCACCCGTAGCGCGACAAATCGATTTCTCCTTTCCCGGATACCTGCACGCCTTCTGCAAGCAGCGCCTGGCGCTGACGCTGTAAATCTGGCCCGGTCAATGAAATTTCCCCACGCCGGTTCACCACGCGATGCCACGGTAAAACGCTGCCCTCCGGTAAACGCTTTAACACGCCGCCCACCTGACGCGCCGCTCGCGGCGAGCCTGCAAGCCTTGCCACTTCGCCATAGGTTGTGACGCACCCTTCGGGGATCGCGGCGACAATCTGGTAAACGCGTTGCGGGAAGGTGTCGTGGTTGTGCATGGGGGGCTCCTGTCAGTCAGGGTGTAAGCATAAGAATGCGCGGCCAGAAGGGCAACTATGAGTGAAAACGTCGCGCGGTCAATATCGTTTTGATGAATGGAATCC # Right flank : TTTGGAATAATTCAAACGAAGGTTTAGATTCTTCGGAAAATAGAGTTGTGGTTATTTTTTATAAATATGATAAAGCTTCTTGAAATATCTAATTTGTATTTTAGTTAATGGCTTTTAAAGCTTTATTACAATGTGTTTTCGAAAATCATATAGCATTCCCTGACCGTTTTTTTAAAAGGAAATTTTATATGGCATGGGATAAATATGCGGCGATAAGACACGTGCGTGATCGTGCTTATAGCCAAAGTCATCATAAATGCGAACTCTTTGTTAAAGAGGCTATTATTGCGGGTGGAGTAAATATCTATCCCACACCCTCAACAAAAGATATGGGCAAGGCGTTGATAAAACCAGGGTTTTATGAGGTTTATGGCGAGCCTGTTGCTGGTGATGTGGCGGTGATCCAGGCAATGCCCGGCCATCCTGATGGCCATGCATGCATTTATGATGGGCAAATTTGGATAAGCGATTTTCGACAAAAAACGCTCTACCCCGCAGAG # Questionable array : NO Score: 3.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 107358-106475 **** Predicted by CRISPRDetect 2.4 *** >NZ_NROB01000005.1 Cronobacter dublinensis strain cro981C2 contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 107357 29 100.0 32 ............................. TCTACGCAGGTTGCCCGCGCATTGCGCCAGCG 107296 29 100.0 32 ............................. CATGTATCCAGCAGCTATCCCCCCGGAGTTCA 107235 29 100.0 32 ............................. TACGGTGGCTATGTGTTTAGTCTGGATGACAC 107174 29 100.0 32 ............................. GCAATGCGCCCTGATAAGACCTGTGGAGCGCG 107113 29 100.0 32 ............................. GTGTCGTATATCCGGATGTGACTTCCGAAACC 107052 29 100.0 32 ............................. CGAATATAGCCCGGAATAGAAAACGTCCTGTT 106991 29 100.0 32 ............................. GGCGAGATTGACGAAGTGCTGAAATCACTGGA 106930 29 100.0 32 ............................. ATTTTCAGAGCGGCCAGCGCGTAGTTGCGGCA 106869 29 100.0 32 ............................. ATGACAATCGAGCAGATCCGCAGACTGTTTGC 106808 29 100.0 32 ............................. TGATCTTTGCTTTGTTGATTGAGCTTGTTGAA 106747 29 100.0 32 ............................. AAGATCCGCGCTGCCGGGTATGATGCCTGGCG 106686 29 100.0 32 ............................. GTATGGCGGACCTCGCTCAGCGCGATGGATAT 106625 29 100.0 32 ............................. AGCCAGGGCGGGGCAGTAAATTTTGGGCTTGA 106564 29 100.0 32 ............................. CATCCTCTGTTTTCTCAAACGAGCGTGTGGAA 106503 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGAAAGCTTTAAATGGATGATGGCGCACAACATCGCCTTTATTGTCGTCAATATCAACATCAACTATCGCCGTCCTGCGGTGCTTGGCGACATGCTGACCATCACCAGCGAGATGAAACAGCTTAATGGTAAAAGCGGGGTGCTGAGCCAGGTAATTACGCTGGGGCCCGAAGACGAGGTGGTCGCTGACGCTCTCATCACGTTCGTGTGTGTCGATCTTAAAACCCAGAAAGCGCTGCCGATTGAAGGCGAACTGCGCGAAAAACTGGAAAATATCACAGGGTAAATTCTGCAATCACGCTGCCTGTGCGTGTAGTCATGGACTTCCACTCACCGAAAGCGAACAATCCGGTAGATGTTATCGGCCCGAAAGCACGCTGAAAAAGGGCTTTTAAAATCAACAGGGTAGCCGCTCTTTAACAAGATGGGTTGTGAAGTAAATGTTGGTAGAATGTTGGGGTCGATAAAAGTTTAAAGAAAACAGCAGGTTGCTTTTAGA # Right flank : AACCCGTTCGCCGCGGCGCAAAAAACGCATCTCTGTCACTCGTGCCAGCCCGAATATCCAGCTAACCACCCGCCAGGGCAATCCCTCCCAAACCCCATATTCTTCAGCGGCGTTTATACTTCAAAGCCAACATGAAATTTCGCAACACTGCGCAACGAAGGAGAGGCTATGCGGGTACACCATCTTAACTGCGGTTGTATGTGTCCTTTTGGCGGCGCGCTGTATGACGGCTTCAGCAAAGGGTTGCACGCGCATCTGATTTGCCACTGTCTGCTGATTGAAACCCAAAATAACGGACTGGTGCTGGTGGATACCGGCTTCGGCTGCGACGATATACGCCATCCTGGCCGTCGTTTGCCCCTCTTTTTCCGGGCGCTGAACAACATTCAGTACCGCGAATCATTAACGGCGCTGCATCATATCAAGGTGCTCGGTTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGCGGCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 14-592 **** Predicted by CRISPRDetect 2.4 *** >NZ_NROB01000082.1 Cronobacter dublinensis strain cro981C2 contig82, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14 29 100.0 32 ............................. ACTGGCGGGCGAACAGCTCAATACGCGGCACA 75 29 96.6 32 ............................C TGAACTGCAGGGTTGCCGCACTGGTTGCCCCA 136 29 100.0 32 ............................. CCTTCAATACTCCCGCCGAACTCCACGGCAGG 197 29 100.0 32 ............................. GCAGATCTTCGACAGCGGCGACGTGTCCGTGC 258 29 100.0 32 ............................. CGGAAAACCTGCAGGATCTTGTTTACGGCGTT 319 29 100.0 32 ............................. TTTCCAGCAGAAGTTATTTTCTATATCAATGA 380 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 442 29 100.0 32 ............................. CCGCCTGCGTCCTAACCGGCCTGTAGGCTTTT 503 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 564 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 10 29 98.3 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATTGCGCGGAATTG # Right flank : GACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCTGCCTTTAAACTTTACAGGCATTATTGAACATGAATAAAACCATTTGCACCTTACTTATTACTGCCGCGTTGTGTAGTACTACCGCTGTTGCCAGTGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGCACATGGGGTGATCGGTTGTATGGTGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 112477-113885 **** Predicted by CRISPRDetect 2.4 *** >NZ_NROB01000008.1 Cronobacter dublinensis strain cro981C2 contig8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 112477 28 100.0 32 ............................ TTACTGGATATGCGCGAACGGGGAAAAGCTAT 112537 28 100.0 32 ............................ TCGGCGATGCCTGCTGCATGCCCGAAAGTGAA 112597 28 100.0 32 ............................ AACTCCGGTCATAACGCCGGACAACATCCCGT 112657 28 100.0 32 ............................ ACCCTACCCACTTGATTAACGCGCACCAGAAA 112717 28 100.0 32 ............................ GCAAAGACGCCGGTAAGCCAGCCGAACGCAAA 112777 28 100.0 33 ............................ ACTTCGCTCGTCGCTCTCCGCGATTACCAGGAG 112838 28 100.0 32 ............................ GTGTAATCAACGTCGCGGACGGCCTCGTACAA 112898 28 100.0 32 ............................ CACAATGGCCGGAGGAACCAGAATGACTCTCG 112958 28 100.0 33 ............................ TGTACAGACTGGCTATTAAATCGAAAATTATTA 113019 28 96.4 32 A........................... TGATGGAGAGGTGTGAGATGTCACATATGAGC 113079 28 100.0 32 ............................ AAACCAAGAGCGGGAGAAGTCCGGGAAGCCAT 113139 28 100.0 32 ............................ TGATACCGCCGACCTGGTGACAAGATTTGCAA 113199 28 100.0 32 ............................ TATGTCCGCATTGAAACCGGGCTGGGGAATTT 113259 28 100.0 32 ............................ TGGTTAAACAAATGACCGACGCGCAAATAGAT 113319 28 100.0 32 ............................ GATAGCGTCACGCTCGATAGCGAGCTTTCTGC 113379 28 100.0 32 ............................ AGTTGTGGATAATGAATTAAAGCAGGCTATAA 113439 28 100.0 32 ............................ AAAAGGCCCGGCTCTGACCGCGCAATCGTGGC 113499 28 100.0 32 ............................ CCATTCGTCAGCTGCAAATTCACGCAACAAAT 113559 28 100.0 32 ............................ GATTGTGTGGGTGTGCGCCGGCAGGTTTCCGG 113619 28 100.0 32 ............................ TGGCTGCGAGCTGGGCGGCGGAAAAGCGCGGG 113679 28 100.0 32 ............................ AAAGATGGTCACCGAAGGCACGCAGTCACGCG 113739 28 100.0 32 ............................ GAACAGCGACACGTTGAAAATCACATCCAGGT 113799 28 100.0 32 ............................ CGGATATACGGCAGGCCGAAAGGGTTCTGGCA 113859 27 92.9 0 ....................-...A... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAATACAAAAACAGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTCAGCGCAAAACTGTTGGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCGATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGATATTTCGCCCTTCCATTGGCCGTTAAATGCCCATATCAGGCGGCTTTGCGCCAACGTCAGAGGTAAAACAGCGAACAAAAAGGCTGTCTTTAACAGAGGAGCGAAAAACCCTCAGGTTGATATGCCGAAGGCGGAACAATGAAGAGGTTTAAAATAAAACCACCGCTGTGAAATCTGCCGCGTAAGACCCTTTTTTACCGCCCGTCCTTAAGATATTGATTTTTATAGCGCTCGACTTTCACGTTAAAAAAAGGGTTTCAGGAAGAAAAAGAAGAAATTTGTTTTTAATTCAAACAACCTGGTAATATTCGCTCTT # Right flank : AATGCCATTTTTAATGCCATCATCGAAGGCAAAAGCCCATACCTAAAGATTAATGAATAAACTTCTTTATTTATTCGTGCCCTTTGAGGTGGCGGAGTGCATGACGGCTGTGCACTCAGGCTGATATATTTTAAAAATTAAAGGGATGTCACGATATGGTGTCTTAACTAATCACATAATAACGCGTTATTTATATCTTTCTGTGATATTTCCCCGGTAATTATATAACGGAATTATAAGATGGACCGAAATTCTGTCACGCCGTCTGATTTAAAAACGATTCTCCATTCAAAGCGCGCCAATATTTATTATCTGCAATACTGCCGGGTGCTGGTTAATGGCGGCCGGGTGGAATATATCACTGATGAAGGGAAAGAGTCGCTTTACTGGAATATCCCCATTGCCAATACCACAGTGGTGATGCTCGGTACTGGGACATCGGTCACACAGGCGGCTATGCGGGAATTCGCCCGGGCGGGTGTGATGGTGGGTTTTTGTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 122354-123579 **** Predicted by CRISPRDetect 2.4 *** >NZ_NROB01000008.1 Cronobacter dublinensis strain cro981C2 contig8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 122354 28 100.0 32 ............................ GACCTGCCAGGTTGAAAGGTTCCCCATGTTTT 122414 28 100.0 32 ............................ GTGCTCCATTACCTCACGCGGCGTCTGGCCGG 122474 28 100.0 32 ............................ ATGTTCCAGCCTATTGGCGACCCGGTAGTAAA 122534 28 100.0 32 ............................ ATGAAATATGTGACGCACTGATGGATGTGTTT 122594 28 100.0 32 ............................ ATTCTTCGCCGGTGTCAGCCACAAAAGAGAGC 122654 28 100.0 32 ............................ AATCAGGTCTCATCCACCCGTTAGAGTAACCG 122714 28 100.0 32 ............................ AACTCGTCGTCTCGGTAGTTTCTGAAACGTTA 122774 28 100.0 32 ............................ GCACTTGAATCCTGAACCGGTAAACCCACGCA 122834 28 100.0 32 ............................ CAGAAGGACCGCGAGATGCTTGAAGACCTCGA 122894 28 100.0 32 ............................ ACTTGTGTTGCGGGCGTAATAATATTGCCGAC 122954 28 100.0 32 ............................ TTGCAACGGGATCATTCCATTTGCATCAGGCG 123014 28 100.0 32 ............................ TTAAAGCCATCCGTAAAAAGCTCGGGTTAACT 123074 28 100.0 32 ............................ GGGATCGCATCCAGCTCGTTGTCAGCTGTCGT 123134 28 100.0 32 ............................ ATTCGGAGGGAAGCATGTTTCTTAGTTCAGGT 123194 28 100.0 32 ............................ TGCAGCTGCGCCACGGCGAGCGGTTCGATATT 123254 28 100.0 32 ............................ AGTCCGCGACAGCACATACATATCGACGTAGC 123314 28 100.0 32 ............................ TGAAGCCAGACATCACCAACCTGGCGGGGAAC 123374 28 100.0 32 ............................ TACAAGCGCGATAACGAGAATTTTCACGAAAT 123434 27 96.4 32 ........-................... TTCAATTGATGATGACCGCGCTAATGTAGATC 123493 28 92.9 32 ............A....T.......... ACTGACGCCTCCGGGCTTCGCCCTCCGCGATC 123553 27 82.1 0 ...........TA........-C.C... | ========== ====== ====== ====== ============================ ================================ ================== 21 28 98.6 32 GTTCACTGCCGCGCAGGCAGCTTAGAAA # Left flank : CCGGCGCTGGCGGAATTAGAGGCCACGCGCTGGTGGGCAGGGTTACAGGATTACTGCCAAAGCAGCGCAATATTATCCGTGCCTCAGGTGCAGGGCTGGCGGATCGTCTCGCGCGTACAGGTGAAAAGCAATCCCGAACGCCTGATGCGCCGCTCGGTGCGTAAAGGCTGGCTGACGGAAGAAGCGGCGCGGCAACGGCTCTGCGATTTACAAGAGCAACAGACCTCTCTGCCCTGGATTCAGGTTAAAAGTCTCTCCAGCGGCCAGTACTACAGAATCTTTATCCAGCACGGCGAGCTGCTGACCGCGCCCGTCAGCGGCGTGTTCAGCAGTTATGGATTAAGCCCCAACGCGACGATTCCCTGGTTCTGACCTTTTTTAAAATGCCTCGCTAACCTGTTGATTTTTATCATGCGCTGGCGAGGCGCTAAAAAAGGGTATACGGCATCAAAATGCATAATAGGCTTTTAAAAACAAAGGACTGATTTATTTCAGCGTTA # Right flank : ATCGTATTACTGCTCCGCCAGACTTGACCTTCCTGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACTGGAAGATGCAACGCCGAGATTTTATTAAGTACACCGCCGCGCTGGGCGCGTTAAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAACCGGCGCTGCCCATTCCCGCGCTGCTGACGCCTGACGCCAGCAGTCGCATTCAGCTCACGGTGCAGGCGGGCAAAACCGCGTTCGCCGGGAAAAATGTCACCACCTGGGGCTATAACGGCTCGTTACTTGGCCCGGCGATTAAGCTGCGTCAGGGCAAGCCGGTGAATGTCGAGATCCGCAATACGCTCGCCGAAGAGACGACGGTGCACTGGCACGGGCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCGTCATCGCGCCGGGGCAGACCCGCAGCGTGAGCTTTACGCCGGAGCAGCGCGCCGCGACGTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //