Array 1 8281-7130 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBEM010000028.1 Clostridium botulinum strain 2015006229-DFPST 28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 8280 30 100.0 35 .............................. TTTGAAGAACCCACTGGATTGCATTCATAGTCTAA 8215 30 100.0 36 .............................. GATATAGAAAGAGTTGCAGAAGCTTTAGCAAGAAAA 8149 30 100.0 36 .............................. GTTATACTATTAGAAAAATTTATTTGTTCCTCTTTT 8083 30 100.0 35 .............................. ATAGAAAGTCTATATTTTAAATTTTTAGCTAGTTT 8018 30 100.0 37 .............................. TTAATTTTTGCTTTTCTAATATCAACTTGAGTTATAG 7951 30 100.0 36 .............................. TTATCAATCACTTCCACGCAACATATATTATTTTTA 7885 30 100.0 36 .............................. GAATCTACAATTATATATCCATAATTTTTATCAAAC 7819 30 100.0 37 .............................. CATCCAAGGCTTTTAATTCCCCTGATTGCATATCAGC 7752 30 100.0 34 .............................. TTACCCAAAGTGTAAGCTACTTCTTCTTTAATGA 7688 30 100.0 36 .............................. TTATTCTCATTTGTAAACTCAAAGAGTCCTTTGAAT 7622 30 100.0 36 .............................. TGGCTCTACATGCTCCTCTAGTATGTAGCTAGACTC 7556 30 100.0 35 .............................. TAAATTCTTCTTTGCTTATCCCTTTATATAAAGCA 7491 30 100.0 36 .............................. GGTAAATAATAGACATTGGATGCATTTTTTTTACTC 7425 30 100.0 38 .............................. TATGCTCCTGCATCTATATGGTTGCCTACAGTATGTTC 7357 30 100.0 38 .............................. TCTATTTTTGATTTACCAGAAAAGGAATTTAGGTATAT 7289 30 100.0 34 .............................. TTATCTTAGCAATAGACTTTGTATCACCTTGCAT 7225 30 100.0 36 .............................. CCTGTATCGAACTCAAATATCTTATCGCCGATAGTC 7159 30 96.7 0 ...............C.............. | ========== ====== ====== ====== ============================== ====================================== ================== 18 30 99.8 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : AGTAATGTAAACTCAATCATATTAGTGGTTTATATAGGATTTTTCATAGAAATTTCTATTTTATAAAATCATCTGGAAAGCTTTCTGGAAAATCTTGATATTTCAATGGGGGTGTGCTATTTTTAATTTTAAGGAATATTGATTTTACAGTGGTTGAACATTAACATAGGATGTATTTAAGCGTTCTTTATACTGCTTTCTACCTTTTTGATCTTTTGGTTGAACATTAACATAGGATGTATTTAAGCAGGGAACTCAAATTTACAATTTGGTGTGAGTCACTTACTCCTTGGAGAATAAGAGAAGGAGTTTTATAAATTGAATTTTTCCAGGCGTAACAAATTTTAAAACCTATTCTAGTTATTGATATATAAGGCTTAGGATAGGTTTTATTTTATATTTATTAAAAAACGTAATCACTTGGAAAACTTTCTATAAAACCTTGTAAAATCAATGGTTGTATGATATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : ACTATATTTCCTCTTGTAGCGAGAGTTCCTATACCTGTTGAACATTTAAGTTCCTTTTAGGTGCAATTCTTTTTGGGTTATTGACTTGTTAGTCTAAAGCTACACCATAAGAAAGTTCATTAACACATGTGGAAGAACAAGTAATAGATACAGCACTTGCTATTGATATGGTGAATTGTATTACAAATAACGAAGGTTTTATTTAAAACTGTTCATATGGCTGGATTTAAGAAATATAATAGTGTCCTAAGTTGTATCTAACCTAAGTAAATTATAAAAATATATGTTTATGTTTATTTTAAGACTATTGTATTAATATGATTCATCCAGATTTAATTGTGACAAATTTCAGTATAAACTTAATAGGGAAGTCTTAGATTTTTTATTGCATGAGATTATACGGAAAATATTAATTTTCACTATAACTTAACAAATGATTGATACAATTTTAAAAAAATCAGGACTTACAATGATAAAGTAGGTCCTGATTTTTATTAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 7829-8124 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBEM010000052.1 Clostridium botulinum strain 2015006229-DFPST 52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ========================================= ================== 7829 27 100.0 39 ........................... GGACCTGCAGAATTAAAAATAGATATAGATAGCTTTGGG 7895 27 100.0 39 ........................... ACTTTATCATTTACCATATTAACTACATGAATATAATGT 7961 27 100.0 40 ........................... CAAGTGGAAGTCCTTTCAATATTTTTTTTAGTTGTTAAGT 8028 27 96.3 41 ................A.......... TCACCCAATAATTTAGCTTCAAGGAGCTAAGACTTTCTAAT 8096 27 81.5 0 ..........A.....ATT...G.... | G,A [8108,8111] ========== ====== ====== ====== =========================== ========================================= ================== 5 27 95.6 40 TTTATCTTAACTATATGGAATGTAAAT # Left flank : AACTATGAAGAAGGTCAAAGAGTTGAGCAAGATACATTTGTTTGTAAAAGATGTGGACATAAGATTAATGCTGATTACAATGCAGCTAGAAATATAGCTATGAGTGATAACTATATATCAAAAAAAGAAGAAAGTGAGTATTACAAAAATAACAAAAATATGGTATAATTACTTCAGTTAAGATAATAAGAACAGGGCGATTTAACGTCCTAAGGCTGAGGGATATTTCCACTCGGCAAGGGTTAATTTCGGATATTGTGTTACCATCCGAACATTCCATGATTAATGCGGTTATATACTCGTATTTTAATTTTTTGCAGTGAAGCTATTTTGGACCTTATGTATTTGAAACCTTGAAATCAATGATATTTGAGTAAGTTCTATATATTACCCAAAAACACTACTGGAGATTTACTGCAGAATAAGGCAAATTAGTTATATGTTTATGCTGTGTAATTTAGCTTATACCAGTAGGTTAAAAGATTTATAAAATTAGGGGG # Right flank : TTTAATATTTGTTTTTACAAAGCTAAATTTTAAAGAAGTTTAGCTTTATCTTTTAGGTAAAAAGCTGTCGCACTAATTTTTTTAGTGCGACAGCCCCATGATGATGGATAATTATAGAATTAATATATTATTGCAGTAATAATATAACTATACTATAAGCAGTTGCAGCTGTACTTAGTATTTTTAATATAGATTTTGCATCTCTAAAAATTATATACAATACTCTAAAAACAAATAAGAACATTTTTATTATATCTTTATTAGTTAGCAAATTGTAGTTCCCCCTTTCTATTATTTTGGTTAATTTATTAAATTTTACTTAAATATGCTATAACAAACAACATTTTAGATGCTCTAGCTTGTTTGAGCTACTTTTATAATACAAATATGATAAATTATCAAAACATAATAATATTTTACAATTGGGTAAAGTTGGAACAGGGATTAACTTTAAAATTAAAAAATAAAGCAAATAATTAAAATAAATGAATGTATGATTT # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTATCTTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:81.48%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 1509-1017 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBEM010000092.1 Clostridium botulinum strain 2015006229-DFPST 92, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1508 30 100.0 36 .............................. AAGTAATCCATTTTAACCTCAAGACCATCACGCTTA 1442 30 100.0 36 .............................. TAATCATCTGTATGCATATTTCCAGAACCTAGTCCG 1376 30 100.0 36 .............................. CTTGCTCCTGTATAAAGTCTTTCTATCTCTGCATAT 1310 30 100.0 36 .............................. TTTTTAATAAAAGATGGAATTGTATTAGATAAAAAT 1244 30 100.0 36 .............................. GATAGATGTATAGAGTTTTTAACAAAGTTTAAATCC 1178 30 100.0 36 .............................. TGATATAAGCAGTAGTGAAAGTTGGTGGGATGATGT 1112 30 100.0 36 .............................. AATACAAAAATAGCAGGATTGGTACTAAAACTTATA 1046 30 93.3 0 ............................GC | ========== ====== ====== ====== ============================== ==================================== ================== 8 30 99.2 36 GTTGAACAGTAACATAAGATGTATTTAAAT # Left flank : CTCTTTGCCATTAAGTTCTATGTGAATACCAAGAAAATTAATCTTGATAACTAGTTTAGAAATAAAAAGATTATGTTTTAAAATTAATTTAACAATATAAATTACAACAAAACTTTTTATGGTTAATTCTAGCATATCCAATACCACCCCCTATTTATAAGTGAAAGACTCACAATATCCTAGGAGGATAAAATATTCAAAACCCCCGTAGCCATCCACTACGGAATTACTATCCTAACTTGGATATTATATCATAATTGTCTATACTAAAAACAGAGGAGTTAAATGGTAAATAACATTTCGATTTAGAATATTACGTTTATTTTTCTAACTAATTTTAACTTACAAACCTATCTTAGCTCTTGAAATATAAGGCTTAAGGTAGGTTTTTCTTATATATTCATAAAATATAATAATCGGTTGGAAAAATTTCTTTAAAACCTTGTAAAATCAATAGTTATATGCTATTCTTAAAATTAAGAAATGGCTATTTTACTATG # Right flank : ATGGAACCCAAATCTCTGATTTGACGTGAGTCGCTTACTCCTCCGAGAATAGGAGAAGGAGTTTCATTAATAAGCATAGCGCATAGCTTATATTTAATTAAATTTTTCCAAGTGAATTCAATTTTAAAACCTATTCTAGGTATTGAAATGTAAGGCTTAGAATAGGTTTTTATTATGTATTTTTAAAAAAGCAAAATCACTTGGGAAAACTTCTACAAAACCTTGTAAAATAAATGGGTATGTGCTATTTTTAAAAATGAGGAATGGCTATTTTACTATAATCGAACATTAACATAGGATGTATTTAAATATATAAAAAATAAAGAAATTGAAGTAGATTCTGTAGATCGAACATTAACATAGGATGTATTTAAATCCATTACCTGGTCTTTTGGATTTGGCTAGTGCTGGCTGAACAATAACATGAGATGTACTTAAGTAGAGAACTCAACTCTATAATGTGTTATTAATCATGTACTCTTTATAGATTATAGAAAAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 2 3385-2375 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBEM010000092.1 Clostridium botulinum strain 2015006229-DFPST 92, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3384 30 100.0 36 .............................. AAGAATGCTAGAACTTGCAAAACATAAACAATTTGA 3318 30 100.0 34 .............................. TTGGAAAGATGTATGCGAATTTACAAAAAAGGCT 3254 30 100.0 37 .............................. TATTTAACTACATTTTCTCCTCCTGCTTTATATTCTA 3187 30 100.0 36 .............................. ATAGATTTTGTCTCATTTGCATCTTCATATTTCCCA 3121 30 100.0 36 .............................. TCAGTTCTAACAATTGCTGTATATCCTGCTTCAGCA 3055 30 100.0 34 .............................. GTAGTTACAAGTGTTCCATCTACTATATCTTCGC 2991 30 100.0 36 .............................. GGGAAAATAATTCTAGCTATTTTGTTTATATTATTT 2925 30 100.0 35 .............................. GGGTAAATACAGAAAGCAATTTAAAATGGCGAAGT 2860 30 100.0 35 .............................. GATAGAACACATCATGAAGCTGCAGCAGATGGAAA 2795 30 100.0 36 .............................. AAAATAACTGTATGTTTACTAGAATTATTATTTTTT 2729 30 100.0 35 .............................. AAGTTTTGAAATTTTTCATTTAACATTTACAAACA 2664 30 100.0 35 .............................. CGCAGTTGATGTTACTAATGGTGATATGCCATGTT 2599 30 100.0 34 .............................. AATTACAAAGGTATTAAACCTTCAAAAATAATAT 2535 30 100.0 35 .............................. GATATATCTAAGTCAAGCTTACCAGCCCCATTAGT 2470 30 100.0 36 .............................. CCTCATAAGCAGCTCCCTTATGAAGTAAAAAGAAGG 2404 30 86.7 0 A......................C.G...A | ========== ====== ====== ====== ============================== ===================================== ================== 16 30 99.2 35 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : AAAAGCTTATATTCATGTATTTACTTTGTTTTTTGCAGTAAACATTTATGATATGATTGTTCTAGATATAGGTCTTTTTTGTCACAGTAAAAAAACTAGAATACCTGGTACAGAAGATATGGATAAAGAATATAGAAATCCATGGCATCATATAAAAGGAGCTGGTATTGGAACTATAATAGGTGCTGTAGTAGCATTATTATCTGGAGGAATGGTCCATTTCATATCAATAATATAGTATTTAAGTAGCGAACCCAAATCTCAGATTTGGTGTGAGGCACTTACTCCTTGGAGAGTAGGATAAAGAGTTTCATAAATTGAATTTTTCCAGGCGTAACAAATTTTAAAACCTATTCTAGCTATTGATATATAAGGCTTAGGATAGGTTTTTATTTTGTATTTATAAAAAAACAAAATCACTTGGAAAACTTTCTTTCAAACCTTGTAAAATCAATGGTTGTATGCTATCCTTTAAATTAAGAAATGGTCATTTTACTATG # Right flank : AAACAAATAACGATGAAAAGATAACAAATAATAATTAAGGTGGTTTTTCATTGACAAGGTTTTTCAACATTTTGAAATTGAAAAACTAACAGCAAATATTATACAGAAAACTATAGAGAATCAATTATAAGCAGTAAAATCTAATTTTATAGTTAGTTTTTTTATAGAATTAGATAGTTAAAAAATTAAACATATAAATATATGTTTATTTTTTATATAAATTTGATATAATATAAATAAGAAAAGCTTAGTGTTGGAGCACTAAGCAATCCTTAGAACATTTATTTTGTTTTAGGGCTATTGGATGAATTTAATAATTAAATTTGAGAGATTAAAGCACTATTCTTGGTCGGATGGGTGCTTTTTCTCTTTGCCATTAAGTTCTATGTGAATACCAAGAAAATTAATCTTGATAACTAGTTTAGAAATAAAAAGATTATGTTTTAAAATTAATTTAACAATATAAATTACAACAAAACTTTTTATGGTTAATTCTAGCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 9009-9368 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBEM010000101.1 Clostridium botulinum strain 2015006229-DFPST 101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 9009 30 100.0 35 .............................. AGACAAAATAGATAGGTTGCAAGAAAAGGTTGAGT 9074 30 100.0 37 .............................. TTTAATACTACCGGAGCACCAAATTTAATTTCTCCCT 9141 30 100.0 36 .............................. ATATGAATAATAAAGATAGGCAAAAAGTGGCGGATA 9207 30 96.7 36 ...........G.................. CAGTTATTTCTTAATATTTCTAATTCCTCTTCTGTT 9273 30 100.0 36 .............................. TTATCAAAATTTACAGAGGAATACGAAGGATAAAAA 9339 30 93.3 0 ............................GA | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 98.3 36 ATTGAACATTAACATGAGATGTATTTAAAT # Left flank : AAAGGAGAAGATGTAAATGGGGAAAGGATTTAATTATAATTATGCCTTTGTTTTTTATGATGTTAATGAAAAAAGAGTAAACAGAGTATTTAAAGTTTGCAAAAAATATTTATCTCATTTCCAAAAATCTGTATTTAGAGGAGAAATAACACCAGCAAACTTAATATTATTGAAAAGGGATTTAAATAGAGAAATAGATGAATGTGAAGATTTTGTATGTATTATAAAGTTAATGAATAACAATGTTTATGGAGAAGAAATATTAGGAAATAAAGGAATAACAACAGGGGAAGATCTAATATTATAGAAAAAATAAAATTGATTTTTACAGCCAGTCTAAATTTTAAAATCTATCTTAAACTTTGAAACATAAGGTCTAAGATAGGTTTTTGTTATCTCTTTTTAAAAAATAGGAATCCGTTGGAAAAATTTCTTTGAAACCTTGTAAAATCAATGGATATATACTATCCTTAAAATTAAAGAATGGTTATTTTTCTATG # Right flank : AAGAGAACCCAAATCTACGATTTAGTGTGAGTTGCTTACTCCTTCGACAGTGGGGAAGAGGTTTCATAAATTGAATTTTTCCAGGCGTAACAAATTTCAAAATATATTCTAGCCATTGATATATAAGGCGTAGGATAGATTTTTATTTTGTATTTATAAAAAAGTAAAATCACTTGGAAAATTTTCTATAAAACCTTGTAAAATCAATGGTTGTATGATAATCTTAAAAATAAGGAATGGCTATTTTGCTATGGTTGAACACTAACATAAGATGTATTTAAATTAATACTTAATAGCCTCTTCCTTTGTATTTGTACCTAGTTGAACACTAACATAAGATGTATTTAAATGCTATACCCCAATTGCCCAATCCTTCTATACTATATCGTTGAACACTAACATAAGATGTATTTAAATTATTTAGAAATAATAATGGAATTGAATTTAATAGTAGTTGAACACTAACATAAGATGTATTTAAATAGCTTATGCTGATAATG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 9621-10241 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBEM010000101.1 Clostridium botulinum strain 2015006229-DFPST 101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 9621 30 100.0 37 .............................. TAATACTTAATAGCCTCTTCCTTTGTATTTGTACCTA 9688 30 100.0 37 .............................. GCTATACCCCAATTGCCCAATCCTTCTATACTATATC 9755 30 100.0 36 .............................. TATTTAGAAATAATAATGGAATTGAATTTAATAGTA 9821 30 100.0 34 .............................. AGCTTATGCTGATAATGCAGATGTAGTAGAAGAT 9885 30 100.0 36 .............................. GAGAGCGGTGAAGCTATGAAAAGCCTTTTTAATTTA 9951 30 100.0 35 .............................. TGAAAAAACTAAAATGTCAGCAGGAAAAGTAGGAA 10016 30 100.0 36 .............................. GAGAGCGGTGAAGCTATGAAAAGCCTTTTTAATTTA 10082 30 96.7 35 ................G............. GCTGTTAAGACTTCTACACCTGTTAGCGAGGGTTA 10147 30 86.7 35 A......CT.......G............. TTTTTATATATAGTTGTATTTAATTCTTGTACTGC 10212 30 86.7 0 A.......T......G............T. | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 97.0 36 GTTGAACACTAACATAAGATGTATTTAAAT # Left flank : ACCAAATTTAATTTCTCCCTATTGAACATTAACATGAGATGTATTTAAATATATGAATAATAAAGATAGGCAAAAAGTGGCGGATAATTGAACATTAGCATGAGATGTATTTAAATCAGTTATTTCTTAATATTTCTAATTCCTCTTCTGTTATTGAACATTAACATGAGATGTATTTAAATTTATCAAAATTTACAGAGGAATACGAAGGATAAAAAATTGAACATTAACATGAGATGTATTTAAGAAGAGAACCCAAATCTACGATTTAGTGTGAGTTGCTTACTCCTTCGACAGTGGGGAAGAGGTTTCATAAATTGAATTTTTCCAGGCGTAACAAATTTCAAAATATATTCTAGCCATTGATATATAAGGCGTAGGATAGATTTTTATTTTGTATTTATAAAAAAGTAAAATCACTTGGAAAATTTTCTATAAAACCTTGTAAAATCAATGGTTGTATGATAATCTTAAAAATAAGGAATGGCTATTTTGCTATG # Right flank : TAGATAAATCAAATCTACGATTTGGCGTGAATCGCTTACTCTTTAGAGAATGGCATAGGGATTTTTATAAAACTAGACTATGCATTGTGATAATTTCTATATAAATTATTAGATAAAGGGGGATCTTATGAAAAATAAAGTTACTAATAATTTAAATCTTGTTGCAGCAATATTGTTTGGAATTGTGGCTATGTTAAATTTTTTTCAGCATAAAACATCACTAGCAATTACATATATCTGTTCAGCAATATGTTTTTGTACACTTGAATTTTCAAAAAAGAAAAATGCAAATCATAAATAAATTTAATTTTAAAAACCTGTCTATTTTAGGACAGGTTTTTAGTATTTAAAGGGAATAGATAAAATAGTTTTTGGTAGTTATGTAAATATTGTATATTATTTTATATTTTTGGAGGATTATCCATAACTCTGTAGAAGAATATTTGTGTAGGAAATATATTATAAAAATATGGAGGGAGTATTGTGGATAAATTTCGTAA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACACTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //