Array 1 4432-11 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDRZ01000154.1 Syntrophaceticus schinkii strain Sp3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 4431 31 100.0 35 ............................... TGCTCTTGCTACAGCCTCAGCCGCTGCCTGGGCTG 4365 31 100.0 35 ............................... TACGTCCTCAGGAGCAGGTGCCCAGTCAGTTGATG 4299 31 100.0 35 ............................... CTTGGAACTCTACTATTTGGGCATGACCGATAAGG 4233 31 100.0 35 ............................... ATGTGAAATAATCGCGAGGTGAACACACATGGCGG 4167 31 100.0 35 ............................... CTCTGTGGCAATACTCATGGGCTCATTGGTATTCG 4101 31 100.0 34 ............................... CGAAGTTGGAGCCGCGGATTACTACGCTTTTTCG 4036 31 100.0 34 ............................... ACTTTTGGATGCTTATATCGCATACGAAAGAAAG 3971 31 100.0 35 ............................... CGTTGAGGGTTTACGTGGTAATCAGTATTTCCAGG 3905 31 100.0 35 ............................... ATAACATCCTTGATTGCTTTGCAGTGGTCCTGGTG 3839 31 100.0 34 ............................... CCGCGGCTGCTGCTTGCCAACACCTGAATATCCG 3774 31 100.0 34 ............................... ATTTTCATTCAACACCCCCGCCGTGGGTATGGTG 3709 31 100.0 33 ............................... ATGCCCAAGGTGCCGAGTAGCGCACCAAGGACG 3645 31 100.0 34 ............................... GCTCTAATTTTGGACTACAACTGTCGACAGTAAG 3580 31 100.0 36 ............................... AAATCATTTAAGCAGAACGCAAAGCAGGCGTTTACG 3513 31 100.0 35 ............................... TCTGCTGTAGCGCATACGTCTATGTCAAAGCTGAG 3447 31 100.0 35 ............................... TTGTGGGGTCCACTTTATCTTCTTCATCAAGGCTG 3381 31 100.0 35 ............................... TTCATAAAGGTCAACAAGGTGACAATGAAAGTCGG 3315 31 100.0 35 ............................... CCGGGCAGGTGAAATAAGCTACGCATGTCTGCTCG 3249 31 100.0 34 ............................... CTAAAGCTAAGGCCAGGCGAAAATAAAACCTCCG 3184 31 100.0 35 ............................... GATAAAGTGTTTAAACGTCGGCATCATCGGCATCG 3118 31 100.0 36 ............................... GATGAAACTGCCTGAAAGCGGGACCGGCTCAGAGGG 3051 31 100.0 35 ............................... GTATTACGGGTGTCGGCTGCGGTCGGAGCCACTAG 2985 31 100.0 36 ............................... AATCCCTACCGCGCCCACCAGCTAGAACAAAAGAAG 2918 31 100.0 33 ............................... CAGATGATGAAGATTAATTTTGTATCGCCTTGG 2854 31 100.0 33 ............................... CGGGTCCCGGGCTCGGGCTGTGAATTCCTCTCG 2790 31 100.0 34 ............................... CCGAGGCCGCCGCAATTCTAGGCGTTACTCCGCG 2725 31 100.0 36 ............................... GCAGTATCTACAGTTATTGCGCGGGGGCCGTACCCG 2658 31 100.0 34 ............................... ACAGAGCAGGCTCTAGGGGCGTTGGCCATGATGG 2593 31 100.0 34 ............................... AAAGGGGTTGCTCCGGTGGATGGCTGCTCTCAGG 2528 31 100.0 33 ............................... TTTATCCAAGTCAATATATAGCCCGTAAGCGTG 2464 31 100.0 34 ............................... GATTGACCCGCTCCACTCCTTAATCCCAGCCAAG 2399 31 100.0 34 ............................... CCCGGGGCATCAGGTTTCACCGCCCTCACCGCCG 2334 31 100.0 35 ............................... TTTCGAGATAAGCGACCATGGTATCGTATACCTCG 2268 31 100.0 36 ............................... CTGTATCTTCTGAAGACCCATCATCCACTGTCCCCG 2201 31 100.0 36 ............................... GCTGATCGTACTTCATCATCCCAGGCGGCAATATCG 2134 31 100.0 34 ............................... TCCGAGTTCGGCGCAGCCGTGAAATTTAAGCGCG 2069 31 100.0 35 ............................... GTGATTATCCCTTTTTCCAGTAGCACAGGCAGTCG 2003 31 100.0 34 ............................... CTCTACTGCCTGCTGTATGATCTTTTCTATCTCG 1938 31 100.0 35 ............................... ACCCCGGGCCTGGGCCTTAGGATCCCAGGTGTAAG 1872 31 100.0 33 ............................... TTTCAAAGCTTTTAACTGTATCCTGCCATCCCG 1808 31 100.0 37 ............................... AAGAAGACATGGGTATTGAGCCGCTCTGCAACAAACG 1740 31 100.0 34 ............................... ACAGAGCAGGCTCTAGGGGCGTTGGCCATGATGG 1675 31 100.0 33 ............................... AAGCTCCGCTCACTGGCCAGCAGCACAGTGTTG 1611 31 100.0 33 ............................... AATTCATCCTGGAGTCTGGCCACTTCATCGGCG 1547 31 100.0 34 ............................... AGGAATTGGGCATTGAGTCACTTTGCAACAAACG 1482 31 100.0 34 ............................... ATGGCGTTGGACTGCCTTTGCATCGACATTGCCG 1417 31 100.0 35 ............................... CTGAAACGAGGCAAAGAACAAGAGAAACCGGCAAG 1351 31 100.0 34 ............................... CTTGCCTACATGCATACGAATCGAAGATAAACAG 1286 31 100.0 33 ............................... CAGTAGCACAGGCAGTCTTTTTAACCTCTTTTG 1222 31 100.0 35 ............................... ATGGCTGAAAAGGAGCAGGTATCACTTTGGGAGCG 1156 31 100.0 34 ............................... CCGGATGGCCTTATCCAGGTCCCTCAGAGGCACG 1091 31 100.0 35 ............................... AGGTTAATCTTTCTCTTGATTGGGGGGATCTCGCG 1025 31 100.0 36 ............................... CCCGTACTTTTCCCGATACCAGCCTGGTCACTGGCG 958 31 100.0 34 ............................... CTCTACTGCCTGCTGTATGATCTTTTCTATCTCG 893 31 100.0 35 ............................... ACCCCGGGCCTGGGCCTTAGGATCCCAGGTGTAAG 827 31 100.0 37 ............................... AAGAAGACATGGGTATTGAGCCGCTCTGCAACAAACG 759 31 100.0 34 ............................... ACAGAGCAGGCTCTAGGGGCGTTGGCCATGATGG 694 31 100.0 34 ............................... CTGAGAAGCATTGGAGTTGAGGAAGAAGGCGGCG 629 31 100.0 36 ............................... CCTCACTCCGGTGGGGGTTTTTATTATTTCATCAGG 562 31 100.0 33 ............................... AAGCTCCGCTCACTGGCCAGCAGCACAGTGTTG 498 31 100.0 33 ............................... AATTCATCCTGGAGTCTGGTCACTTCATCGGCG 434 31 100.0 34 ............................... AGGAATTGGGCATTGAGTCACTTTGCAACAAACG 369 31 100.0 34 ............................... ATGGCGTTGGACTGCCTTTGCATCGACATTGCCG 304 31 100.0 35 ............................... CTGAAACGAGGCAAAGAACAAGAGAAACCGGCAAG 238 31 100.0 34 ............................... CTTGCCTACATGCATACGAATCGAAGATAAACAG 173 31 100.0 34 ............................... CAGTAGCACAGGCAGTCTTTTTAACCTTCTTTTG 108 31 100.0 35 ............................... ATGGCTGAAAAGGAGCAGGTATCACTTTGGGAGCG C [96] 41 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 68 31 100.0 35 TCGCACCCCGTGCGGGTGCGTGGATTGAAAC # Left flank : GGTTATCTCTTCTTTTCCCCAGTTCCTTCATCAATGTCACCAGATCGACCCTTCCTTTCGATAGCCGGCAGATCCCATACTTCCAGACCCGCTCTTTCCAGTTGAGCCCTCTTTGCCTCACTGTAGCTCCCCTGTACAGCTGCCACAACAGTTGGTACTTCTGAGGCTGTCTTGACAAGCATCGAAGTCTCTGGAATACGCAGAGAGCTGTCAACAATAACTCTCAGGGGTTGTTCATATTCGCCATCAAGCCTCACTGTCAAAAGAGGGTCATCTGCCAGAACAGTGCCAATCCCTACCATGATAGCGTATATTATGGCGACTAAAAAA # Right flank : CCCGGATGGCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCGTGCGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.60,-5.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 11-3044 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDRZ01000155.1 Syntrophaceticus schinkii strain Sp3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 11 31 100.0 33 ............................... CGCTCTATCGTCAACCGTGCAGAATCCTGGGGG 75 31 100.0 33 ............................... AATGCTCAATACGGAGCATATGCTGACATGCCG 139 31 100.0 34 ............................... AATTAAACGCTCAATCCCGGTGCTTTTTCTCTGG 204 31 100.0 34 ............................... TTTTGCCTGCTCTGCCGTATAACTACTCTCTACG 269 31 100.0 35 ............................... ATCGCTGGTATAGTTTAGCCCCATAACGCTGTCGG 335 31 100.0 33 ............................... TAGCCCAACATGCCTCCACCGCTTGGGTGTTTG 399 31 100.0 35 ............................... CAGACCATTTCATTTTCCTGCCCCTCCTTCTTAGG 465 31 100.0 33 ............................... CCTGCCGGGACAGTGGATTATAATACGGGTGAG 529 31 100.0 33 ............................... AATCGGCTGTATGATTCTACATGCCCATATCCG 593 31 100.0 35 ............................... CCGTATTTCGGCGATTGTCGGAAAAAACTTCGCCG 659 31 100.0 33 ............................... CCGCTGGCATCATAATGCCTGACTACACGGCTG 723 31 100.0 35 ............................... CAGCATCGCCATGTTGCCTTGATACCCCTCTCCTG 789 31 100.0 35 ............................... TACGTTGATGCTATGGACGTGGACGAGACCAACCG 855 31 100.0 35 ............................... AATAACATAAGAAACACTATCACAAACATAACCAG 921 31 100.0 35 ............................... CTCGAGCCTGGATAACATTGTATCTGTGAACCACG 987 31 100.0 33 ............................... ATGGCATTGAGTTATGCTTTAGGTGCTACCTTG 1051 31 100.0 34 ............................... TGCAAGCTGGATTACCCGTGTATCGTCAACCACG 1116 31 100.0 33 ............................... AAAGAAGGGATATTGATTGAGGAAGGGACAACG 1180 31 100.0 33 ............................... TACCTCTTGAGCAGAACACCGGCTGGATGGACG 1244 31 100.0 34 ............................... TGCTTTACAGTTTACATTTAATACCATGCCTGGG 1309 31 100.0 35 ............................... TAATATCTCCTCAGGTGATACCCTTACGCCAGCCG 1375 31 100.0 34 ............................... ACGTGAAATAATCAAGCCGGAGGTGAATCAGCGG 1440 31 100.0 35 ............................... AACCCGCAGCTCCTTGTCCTGCTCACTTACAACCG 1506 31 100.0 35 ............................... CCTGATGCCAGCAAGAACCCTAAAGGCTCAGCTGG 1572 31 100.0 35 ............................... TACCCTGGAGGCCAAGGGCGAGACTGAGGCAGTCG 1638 31 100.0 37 ............................... ATGAAACAGACAACACTGACAAGGGAGCCAATGCACG 1706 31 100.0 34 ............................... CCCCGAGCCTGACAAATCAAAGTTCGAGGGGATG 1771 31 100.0 34 ............................... TCTGATTGCTTTTGTTTTTTCTGCTTCAATCTCG 1836 31 100.0 36 ............................... CCCAACTGCAGTGTCAACCTCGTCAGTCGGAACTTG 1903 31 100.0 34 ............................... GCCAAATCAGTGCCCGTTTTTCATCGTCAAGGAG 1968 31 100.0 35 ............................... CAATATTTCTCTAACAGTAGCTTTCCGCAGTGTTG 2034 31 100.0 35 ............................... ACCCACTCCTCATCTGTAGCCTTGAGTGGTCGCTG 2100 31 100.0 34 ............................... TCATAGACCCCGTCCAACGGTAAGACAGTAGTGG 2165 31 100.0 34 ............................... AGGCTATGCTTGATCACATACCCCACAGCCAGAG 2230 31 100.0 35 ............................... TACCTTGCCGCCAAACAGACCAGCCACGAATAGCG 2296 31 100.0 34 ............................... TTTTGTACACTAGGGGCGATGACGGCGATAGCGG 2361 31 100.0 34 ............................... CGGCGTATAAGCACGCCCACAAGAATGATGCGGG 2426 31 100.0 34 ............................... CGGTTGAAAAGTCTTTTAAACAACTAGCTAATTG 2491 31 100.0 34 ............................... TTCAGCAGGGTTGGAAATGAAGCCGCTTTCTGTG 2556 31 100.0 35 ............................... TTTAAGCATCTCAAAGCTATGATCTAACACCATAG 2622 31 100.0 35 ............................... CCGCTCTGGCTGGGGCGGAGTAATAGACGCAATCG 2688 31 100.0 35 ............................... ACGTTAAATATAGCTACCCGCCAGGTGAGTGGCGG 2754 31 100.0 34 ............................... ACGTGAAATAATCAAGCCGGAGGTGAATCAGCGG 2819 31 100.0 34 ............................... TTTGAAAGCCCTTAGCATAACCTTCCCACAGCCG 2884 31 100.0 33 ............................... TCTACAGACCGCCTTATATTTACTTTGTCTGCG 2948 31 100.0 35 ............................... TTTACGAAAAAGAGACTGGTGAGAAAGCAATAATG 3014 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 47 31 100.0 34 TCGCACCCCGTGCGGGTGCGTGGATTGAAAC # Left flank : GAAGGCAAGGT # Right flank : TCACCAAAAACCTCATCATACCTGCGTACATCAAGTCGTCCAGGCTGACATGTCCTGCCTGCAGGGCCTGGGCGACACCTTCCTTGCGGATATTGACCTCTTCTGCAATCTGATCCAGTGTTGGGGGTTCTCCATTCTTTTGGGATAACTCCTCTATGGTCCGGTAGATGTGAGACTGCAGATCCGCCACCCATCCCGGACGGTCAAAGGAAACCTCACGCCGCAGGTGGCGCTTCCTCTCCCATGATGTCAATGGGAAGCAAGGTGACAAAGCGGACACCTCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCGTGCGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.60,-5.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 4103-12 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDRZ01000167.1 Syntrophaceticus schinkii strain Sp3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 4102 31 100.0 37 ............................... GTGGATAGGTTGGGCGGGCAGGGTCGGGTGGTGCATG 4034 31 100.0 33 ............................... TTGCCAATGGCAGGCAGGAGGCATACGGAGCGG 3970 31 100.0 35 ............................... TTGCCAATGGCAGGCAGGAGGCATACGGAGCGGTG 3904 31 100.0 33 ............................... GATATGTCGCCAGGCGATATGGCGGAGGTGCTG 3840 31 100.0 34 ............................... CAACAAATCTTTTAGTTTTGCGTAATCCCAATCG 3775 31 100.0 34 ............................... CAGTATTTTGACGGCGAGTTTGCTCTACAAAGAG 3710 31 100.0 35 ............................... CGCTACCAGAGATTGCGAGGCGTGTTGGAATGAAG 3644 31 100.0 35 ............................... AAATAAAAATCGTATTCGTAAACAGATCCATCTCG 3578 31 100.0 34 ............................... ACAGACAGAAAGGTAGGGGGAGTGGAAACTTGGG 3513 31 100.0 36 ............................... ATTTTTATTGTGGAAAGGGGGCGGGGGGTGATTTGG 3446 31 100.0 34 ............................... TCCTACTGGCGGGATCTCCTGCATCTTCTTTCTG 3381 31 100.0 34 ............................... GTGCGGGCGAAGCTGGCCGCGCTGGCCCAGGCCG 3316 31 100.0 34 ............................... TCCTACCCTGGCTATGCTGGGTGAAGCCGGAAAG 3251 31 100.0 34 ............................... ATTTCGGTGCATACGAACTCTTTCACAGACAGAG 3186 31 100.0 34 ............................... GAATACTCCCAAGGCTCTGACGGTATGACAATGG 3121 31 100.0 35 ............................... GCAGAATATCCTACTGCTATAGGTGGTAGCGCATG 3055 31 100.0 34 ............................... TGTATACTTGCAGTGTTCTTTTACGCAATTCACG 2990 31 100.0 36 ............................... CAGCGGAGAACCGGCAGGGCATAAGGAAGGCTGAGG 2923 31 100.0 35 ............................... GCCCTAGCAGCCGCATAACTCTTATCCCTTACTCG 2857 31 100.0 34 ............................... GATAGAGCTCTGTACTTAGGAATCCACTACGGCG 2792 31 100.0 35 ............................... CTGATATACTTTCTTTTTCATTGATATGACCTCCG 2726 31 100.0 34 ............................... CCAGTTGTGGGGGACATTTACGATCTCAAAAAAG 2661 31 100.0 33 ............................... GCTATCACGTTAGACGGCAAAGAGGCAACTTTG 2597 31 100.0 33 ............................... CTGGCATCCAGATCGATGTCACGCTTTTTCATG 2533 31 100.0 34 ............................... TGTCTTTGCCAGTCCTTTCGCCAGGGATATACCG 2468 31 100.0 33 ............................... ATGCAGCTCAGAGAGGATGACCCGAAATTGAAG 2404 31 100.0 34 ............................... TTGTATTTGCTGATTTGTCGGATTTATACCGAAG 2339 31 100.0 35 ............................... TGCTTCCTGCGCCTCAAGCATTTGCATCCTTATCG 2273 31 100.0 34 ............................... AAACCCCCACCGGGAACCAGCGAGGGTAAGGTGG 2208 31 100.0 34 ............................... GCAAAAAAGACATGTTGGCATTTTTATTTACCTG 2143 31 100.0 34 ............................... GTTCTCCTGTGCTCCTTGCTCCGCTCGCGCTGAG 2078 31 100.0 37 ............................... CAAACTTACCGTTGATGCGAAGGGTAGCACCGAACAG 2010 31 100.0 35 ............................... GTGTTTATCTGCCCATTCCTCATTGCCCGATTCGG 1944 31 100.0 35 ............................... TAGAGAGCCGAAAAAGGTGATAGGTATGGGATTTG 1878 31 100.0 34 ............................... TCTACTGACTTATCCAGCGCTGCCAGGATATAGG 1813 31 100.0 35 ............................... AGTTATCAAGGTACTATACTAATTATATAGTATAG 1747 31 100.0 35 ............................... AAAAGTGGGGAATAGTGGGGTTGTCCTGGCAGACG 1681 31 100.0 34 ............................... GATCCCCCCCCCCAGGGGCTCAAGCTGCCCGCAG 1616 31 100.0 34 ............................... TGGAGATCTCATACTCCGAATCATCCGGAGTGTG 1551 31 100.0 35 ............................... GATTATCAAAGAACAACAATAGAAGAATGAACAAG 1485 31 100.0 36 ............................... GGTACATTTTACTGAAATTCTTTAACTTTCTTTGAG 1418 31 100.0 34 ............................... TGCTTTTTGCGTGATTTTGGCTACTTGGTGAGCG 1353 31 100.0 35 ............................... GCCCTGGCAATGACGTATCACGGGGAGTCCCGCTG 1287 31 100.0 35 ............................... TTCCCTGCGCTAGGTCAAAAAAGCAATAGTCTAGG 1221 31 100.0 33 ............................... ATCAAACAACTTTATGACCTCCTTTTATTGAGG 1157 31 100.0 35 ............................... AAAAGTGGGGAATAGTGGGGTTGTCCTGGCAGACG 1091 31 100.0 36 ............................... TCCCCTGCTCTCTACCCTTTCGCGAGAGAGGGTAGG 1024 31 100.0 35 ............................... TAGCCATCTGCCCTCCGGCAGTGGGATTGACTCTG 958 31 100.0 33 ............................... AGTCTCTGGCAGATGTCGGAGACTGAAACGAAG 894 31 100.0 34 ............................... TTTGTAGTCGGGAAGATCGATTAGCACCATGTAG 829 31 100.0 34 ............................... AGGCATCCGCTTGCAATGCCTGTGAGTGGAAAAG 764 31 100.0 35 ............................... GACTGCTTCCCTAATCTGTTCCTCGGGAATTGTCG 698 31 100.0 34 ............................... TTTTATCTCCGGAGCTGTTGTTGATATGCTCATG 633 31 100.0 34 ............................... ACCTTATATTCGTTAAACCGATCAACTGTACTTG 568 31 100.0 33 ............................... TGATTGGCCGGGAAGATGCAGGGATAAATGCCG 504 31 100.0 35 ............................... AGATGTCCCTGAAGGCGTATTAACAATCACGTTAG 438 31 100.0 35 ............................... ATAGGCGGCAATATCATCTTCGTCAGACCTATATG 372 31 100.0 35 ............................... TTAAATATTGGCTAAAAATAGAGTCCGGTGAAGAG 306 31 100.0 35 ............................... ATAGGGGGTGTGGTATATTATGGCGACTAAAAAAG 240 31 100.0 35 ............................... TGCTCTTGCTACAGCCTCAGCCGCTGCCTGGGCTG 174 31 100.0 35 ............................... TACGTCCTCAGGAGCAGGTGCCCAGTCAGTTGATG 108 31 100.0 35 ............................... CTTGGAACTCTACTATTTGGGCATGACCGATAAGG 42 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 63 31 100.0 34 TCGCACCCCGTGCGGGTGCGTGGATTGAAAC # Left flank : CCTCCTCTTTTTCAACCTTGATCGCCCGAG # Right flank : CATGTGAAATAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCGTGCGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.60,-5.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [15.0-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2162-1351 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDRZ01000196.1 Syntrophaceticus schinkii strain Sp3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 2161 31 100.0 34 ............................... CCGGATGGCCTTATCCAGGTCCCTCAGAGGCACG 2096 31 100.0 34 ............................... AGGTTAATCTTTCTCTTGATTGGGGGATCTCGCG 2031 31 100.0 33 ............................... TGCCCATTGCTGTCATTATCGGTTCGTTTCCCG 1967 31 100.0 34 ............................... ATATCATCGGGTGTGACCCAGATTTCCCGGCCGG 1902 31 100.0 34 ............................... ACTCCGGGTGGTATACCCACAGCCACCGCTCTCG 1837 31 100.0 34 ............................... GTGTTGAGGTTTGTTGTATAAATGAGTTCTTCAG 1772 31 100.0 34 ............................... TCGATAATGCTGCTTGCGACCTGAGAAGCATAAG 1707 31 100.0 33 ............................... AGGATATTATGCCCACTGGCATTGAAAGCGTGG 1643 31 100.0 35 ............................... GGTCAATAGCCTGTACTTGTTTCCTGGCCACCACG 1577 31 100.0 35 ............................... CGTGTACTAGCGCACACTTCAGTTGGCGAACCTTG 1511 31 100.0 34 ............................... AAGCCGGTATTGGCGCTGCCAGGGTCGCTGCGGG 1446 31 100.0 34 ............................... CCCTCAACCGCCTGCAACCTACTGAGCACGCCTG 1381 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 13 31 100.0 34 TCGCACCCCGTGCGGGTGCGTGGATTGAAAC # Left flank : TGAAAAGGAGCAGGTATCACTTTGGGAGC # Right flank : TTTTTGTAGATTATTGACTCAACTTTCGCAGCAACAAATAGCCAGTCGTTCCTTGAAAAACGAGGGTAAATTGCCGATTAAGTAGTCAATCAACCTGCGGATCTCCTGCTCAGCCAGTTGCAACCGCTCGCCTAGGAACCGCTCTAACAGGGTGAGAAGTTTCTGGAGCGCTTCTGTCAGGCTAATGTCCTTGAGCTCATCACAGCAGATGTAGAACAATTGGCCGATGGTTCTCAGGTCTTCACCGTTTCGGCTTTCAAGGGAAAGCATGATGTATCTGATGAACACGATAGCTGTACTTGCTACCATGGAATCGTATGAACGCCCCTGAAACTCTTTGGCAAGTTTCAGGTAGGACTTGGACATCTTGAAGAAAACCTCAATACTCCAGCGTTTGCCGTAGATGCGAACTACCTCTTCATCCGGCAGTTCGGTGTCTGTGGTAAGGAGCGCCAACCATTTCTTCTTGGTTCTCCGGTCTCTAACAAACACGATTTTGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCGTGCGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.60,-5.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 6764-1090 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDRZ01000143.1 Syntrophaceticus schinkii strain Sp3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 6763 31 100.0 33 ............................... CTCATCTGGACGTACTGTGGGAGATTTATGGGG 6699 31 100.0 34 ............................... ACAGTACCGTCCGGCATAGCATACTCAGTGACGG 6634 31 100.0 35 ............................... ACCACACCGCCGCCCTTGCATATCATCTCCGGCCG 6568 31 100.0 35 ............................... ATCTCCCCCGGCCAGCAGCCTAGCAACAGCTCGCG 6502 31 100.0 35 ............................... CCAGACAGCCAGGTCATCTTCGGCGTCGATACCGG 6436 31 100.0 35 ............................... CCTGGTAAAGCTGTTGTTTTTCCAGCTTGTCCAGG 6370 31 100.0 36 ............................... ATGTGTTTGATAACAAAACTAACCAGCGTAATCTGG GCGTGGT [6344] 6296 31 100.0 34 ............................... ACTTATTTACACCCCTTTTCCAAATCTTCAATCG 6231 31 100.0 33 ............................... CTGCACTCAAGTGAGCCAGTTAGCTTAATCCTG 6167 31 100.0 35 ............................... TGGTACTGGTTATACAGATGCTGATACTGATCTGG 6101 31 100.0 36 ............................... ATGACAAAAGTCATATCCTTTGATACGGAAAAAAAG 6034 31 100.0 35 ............................... TTGCAATGTGTGCAATAGCCATACTGCCGCCGGCG 5968 31 100.0 34 ............................... CACCAATACCCATAATTAATTGCATTGTCTTGGG 5903 31 100.0 35 ............................... ACGCTAGCCGAATATAACACACCGTTAACCGAAGG 5837 31 100.0 33 ............................... GTAAAACCCGAGGACTTCCTCAATGATGACCTG 5773 31 100.0 34 ............................... ATTTTACATTGCCACCACCTCCAGAATGATTTGG 5708 31 100.0 35 ............................... TCTAGGCTTGTCCTCGGTGGTGTAGTCCAGGGGTG 5642 31 100.0 33 ............................... CTGATGCAATTACCACCGGATCGATTTTCGGCG 5578 31 100.0 35 ............................... AATTCTACCACACCTTTTCGTATCAAACCAGCCCG 5512 31 100.0 36 ............................... CTATGACATGTTTCTCCATCCCCGGCAGTAAAATAG 5445 31 100.0 34 ............................... CTACAGCCGGAACAACTACCCGGCACAGCTGGAG 5380 31 100.0 34 ............................... CTCGCCAGCTGCCTCAAAGGCATCACGGTACCTG 5315 31 100.0 36 ............................... CCTCAAATAATTCTATAGTATAAATACAGATAGGTG 5248 31 100.0 35 ............................... GGCATTACAAGAGCATGACGAGCACTGGTTTCGTG 5182 31 100.0 34 ............................... ATGCAAACCTTGATAATGTTGCCGTACTTAACGG 5117 31 100.0 35 ............................... TAATATTGTTATCTACCTCGCCCGCATCTATAACG 5051 31 100.0 35 ............................... TTCTTTTCTCTTTCCTGGTATCATTCCTAACTTTG 4985 31 100.0 34 ............................... TTGCTCCAGAGTAAGGTCCCGCCGTATAATCGGG 4920 31 100.0 33 ............................... TCTGCCTCTTGTCTCAACCACTCAAGGCAACAG 4856 31 100.0 34 ............................... CGGGTATCGTGTACAAGGGGACAGGGCATTCGGG 4791 31 100.0 34 ............................... CTTTAACAAGTAACAAGCAACTCATTAATCCGCG 4726 31 100.0 35 ............................... CGCCAGCTGGGGGTTGTGTGTCACCATCACAACCG 4660 31 100.0 33 ............................... CCTCTCAGCCTGTTGGGTCAAATACTCACGGGG 4596 31 100.0 36 ............................... GCCCCTATTGCGGAAATTGCGACAGAAGTTGAGAGG 4529 31 100.0 34 ............................... CGGTCAGTACCATCGTCCTGACTGTTTCAAACAG 4464 31 100.0 35 ............................... CCTGATTTCTGCTCCACCTGCTGTCAGGTATTCCG 4398 31 100.0 35 ............................... CTCTATGAGATTGGACCCGCGGTCGATGTAGCCGG 4332 31 100.0 34 ............................... CGCTTCATCGGTACGAGATTCTGCTCTATCGGTG 4267 31 100.0 33 ............................... ATCCTGTCCTTAGAACCTTTTGCGGCATCCACG 4203 31 100.0 34 ............................... TCCTGGCCAAAGCTGATGCAAGGTTCTGGATTGG 4138 31 100.0 35 ............................... CATTGTTATGGTTCGTGGTGCATGTCTGGATGGCG 4072 31 100.0 35 ............................... GCTCCTCACTTGTGAGGGGACGGGCACCGCGGCCG 4006 31 100.0 35 ............................... CCTGATTTCTGCTCCACCTGCTGTCAGGTATTCCG 3940 31 100.0 35 ............................... CTCTATGAGATTGGACCCGCGGTCGATGTAGCCGG 3874 31 100.0 34 ............................... CGCTTCATCGGTACGAGATTCTGCTCTATCGGTG 3809 31 100.0 33 ............................... ATCCTGTCCTTAGAACCTTTTGCGGCATCCACG 3745 31 100.0 34 ............................... TCCTGGCCAAAGCTGATGCAAGGTTCTGGATTGG 3680 31 100.0 35 ............................... TGCTACTTATGACTATCTGATCAATAAATATGGAG 3614 31 100.0 35 ............................... TCGTCCAGTTGCAGATATGCCCGGATAATCTCTAG 3548 31 100.0 34 ............................... CGGGGCATCGGGAAAAAGATACTGCTGTTCGTGG 3483 31 100.0 35 ............................... TTTAGAAACAGCCCTACACAACCGCTTTAGGAATG 3417 31 100.0 34 ............................... AAATTGTACCAAGGTAAAAAGTACCGTATAAAAG 3352 31 100.0 35 ............................... GCCATAATGGTGTTGTGGAGGTGATATCATGAAAG 3286 31 100.0 35 ............................... CATTGTTATGGTTCGTGGTGCATGTCTGGATGGCG 3220 31 100.0 35 ............................... TCCTTGAACTCGTTAGCTACAAGTTTTGCCCAAAG 3154 31 100.0 34 ............................... GTCATCTTCTTTGTCGATACAAACATCGAATATG 3089 31 100.0 36 ............................... AGATCGTCGAAGTTAGCCGTGTCAACTGCCGGGTCG 3022 31 100.0 35 ............................... TATGCTTGGGTGTTAGAGAACGAAAACATACGAAG 2956 31 100.0 34 ............................... CTCATTTGCGGCAACAGCTGCGCGCTCGTCTGCG 2891 31 100.0 36 ............................... AGGGAACGGCAATCATGGGATACTTGGCTCTACTCG 2824 31 100.0 35 ............................... CTGGCCCGCTGCTCGTCTGGTGTAGCAGTCACCTG 2758 31 100.0 34 ............................... TATCACGAATAAGGAGGTAAAAACATGGACCCGG 2693 31 100.0 34 ............................... ATCGCAGCGCCGGGTGCTGCTGGAAGAGCCTCGG 2628 31 100.0 35 ............................... GATAGACCGTTTTAAATCTTGTAGTAATGGGCTTG 2562 31 100.0 35 ............................... TTGGGTGCAGCCACACCATCCGGCCGTCCTTCCAG 2496 31 100.0 33 ............................... GACAAAACACCCGGGATGTCCGTATTTCCGGTG 2432 31 100.0 35 ............................... TTGATTATTTGGTGGGTTGCGGAGCTTTTAGGGTG 2366 31 100.0 36 ............................... GCCAGTCCGGACAACTACCCATATGGCCTTGCCTGG 2299 31 100.0 34 ............................... CCTACTTTTCTTTGCCTTCCCGATTTTGTCAAGG 2234 31 100.0 34 ............................... AGTCAGCCCTTTCATAGTTTCCCGGGCCAGATTG 2169 31 100.0 36 ............................... ACGTGAAATAAAGCAAGACTAAAGCACCTCCGTTAG 2102 31 100.0 35 ............................... TCCTGGCCAATATCCCCGGAGTTATCGACTGGAGG 2036 31 100.0 34 ............................... ACAAAAGCACATCTGCATGGAAAACCAACTTTGG 1971 31 100.0 35 ............................... TGATAGTCTTGGCATCACACTCCTTAGACCGCTTG 1905 31 100.0 35 ............................... CCGTAAGGTGATCCCCATCAAGGCCCTGGAGACAG 1839 31 100.0 36 ............................... ATCAGCCAATTGGTCAATCTGTATAGTTTTAGCCAG 1772 31 100.0 34 ............................... TAGGTCCGTGTGCCTATCCAGAATAGCCATATAG 1707 31 100.0 35 ............................... CGTAGCCCCATTACCGCCACAACCAACCAGCATCG 1641 31 100.0 36 ............................... TCACCAACAGATGCGCCGTTTTTGTCATTGAAAAAG 1574 31 100.0 35 ............................... CCTCAAAAGTATGTTACCGGCATAAGCCAAGATGG 1508 31 100.0 33 ............................... ATACTCGGATTTGAATATTTCGTACTCCTTTTG 1444 29 93.5 34 .................--............ CCGCCCCTTTGCACTTTCAGCAGGTATGCCAGCG 1381 31 100.0 35 ............................... ATTAAGCCACACCCCCCTAATCCATCATGTAGAAG 1315 31 100.0 33 ............................... TTGCTCTTATCTCCCATCCGCCTATGGACGCTG 1251 31 100.0 34 ............................... CCGGTGTAGCCCTATCATAATGATCAAATCGATG 1186 31 100.0 35 ............................... CGCGGTGACAGTATGGCATGTGTGGGGGCAGCTAG 1120 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 87 31 99.9 35 TCGCACCCCGTGCGGGTGCGTGGATTGAAAC # Left flank : TGAGACAGCGTCTTTTGAAGGGGCTGTGCCGGTATTGATATCCAGATAGCGGTAACAGGTTTTTGCCTAAAAAAACTAAGGTCACAAGAAACTGCAATAATTCTTTGCAAGAAAAACCCTTTTGCTTTTTGAAATTCGATTTCACGAGTATTTGACCTATCTTGTGTTCTTTGAAAAAGTTTGCAACATAATTGGCTGACCTATTTTCATCGGTAATGTTTTCTGGTAAGATAGAAGTCACAAGAGCACCCTTCTTTCCTTGGTATAATTGGGTTTTGCATGTTACTTCTATTTTACCAGATTGAGGGGTGTTTTTGTTTACCAAAGTTCAGATATATCAAGGGTTTAAGGGCATTTTTTTTAGTGCGAAAGTTGAGTTATTGACTAGTTGCTCGAAGTTC # Right flank : AGGTTGCAGTATATTGCTACCACATCGTAAGCGTCAAGTAAACCATCACATAGAAAATAAGGTTTAAAGACAGTACAATCACGATGAATACAGTTGAATAAGTTGAAAAAGTAAGCAAACTTTTTAAACTGGGAACGGAGTGGTTGTATGGATACAAAAAAAAGTTGCAGCGGAATACCGGCTATCACAATGGACACGCGTGATACAGGAACAGAAACGCAGCGGGCAAAACATTAAGGATTTCTGTCAGGAAAACGGAATAAGCAGAAACAAATACTTCTACTGGCAGCGAAAGCTGAGAAAGGCAGCTTGTGAGGGGCTCTTAAAAGCCGAGGAGCCCGCAAATATAGTACCAACTGGGTGGATACAAGTTAAACCGGACCAGCTGACAAAAACAACGCTACATATTGAAGTAAGCGGTTGCCGTATAACCGTGGATGAAGGTACTGATCAGGAACTATTAAAAAAAGTCTGTCGCATATTAAGGGTACTGTAATGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCGTGCGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.60,-5.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [11-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 34-1440 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDRZ01000198.1 Syntrophaceticus schinkii strain Sp3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 34 31 100.0 33 ............................... TCTACAGACCGCCTTATATTTACTTTGTCTGCG 98 31 100.0 35 ............................... TTTACGAAAAAGAGACTGGTGAGAAAGCAATAATG 164 31 100.0 34 ............................... TCACCAAAAACCTCATCATACCTGCGTACAAAGG 229 31 100.0 34 ............................... CCTGATGCCAGCAAGAACCCTAAAGGCTCAGCTG 294 31 100.0 33 ............................... CATTTGGCCATGTCTTTCGACACTGCATTCGGG 358 31 100.0 35 ............................... ACCGCGCTTGAATTGCTCTTGCACTTGCTTTTCTG 424 31 100.0 36 ............................... CATAGTCATAGCAATCTCACAGCGGAGTTTATAGTG 491 31 100.0 33 ............................... TAGTAGCAGCGGGGTGCTACCGTCAGAAACACG 555 31 100.0 35 ............................... CACAACCAGCCCGTCCAACCGCCGGCTCAGGGCCG 621 31 100.0 34 ............................... TGAGTATCGCCAAATTGTTGTTTTGTTTTTTTGG 686 31 100.0 36 ............................... TCACTTTTACCATCCTTCTGCCCCACTGTATTGCCG 753 31 100.0 34 ............................... CGGTTCAGGGGTATCACCGTTGCTGTCAACCTCG 818 31 100.0 35 ............................... TATTACGGCCTTATCTTTCAACTTCTCACTGATTG 884 31 100.0 35 ............................... TTCACAGGCTCCTTGGTCTTGATTTCCCGCAGTTG 950 31 100.0 37 ............................... CGTGAAGGTATGGTTGAACTGTACTCCTTGATGAAGG 1018 31 100.0 35 ............................... AAGCCCGGCGTACAGAGATCAACAAAGAGTTGGAG 1084 31 100.0 34 ............................... TAGCTATCGGCGCTCTCATCGCCATTGGAGTCTG 1149 31 100.0 34 ............................... GCCTGGTGGAGACATTTTGATTTCTTCCAATGCG 1214 31 100.0 35 ............................... ATATCCTGGTGGTTGAAATGGCATCTCTTCAACCG 1280 31 100.0 34 ............................... TTCAAAGGCATGGTCAACGGGGTAATTCGTGCCG 1345 31 100.0 34 ............................... TGACCTCCTCTTTTTCAACCTTGATCGCCCGAGG 1410 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 22 31 100.0 35 TCGCACCCCGTGCGGGTGCGTGGATTGAAAC # Left flank : TTGAAAGCCCTTAGCATAACCTTCCCACAGCCGT # Right flank : GTGGATAGGTTGGGCGGGCAGGGTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCGTGCGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.60,-5.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [26.7-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 8274-6867 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDRZ01000237.1 Syntrophaceticus schinkii strain Sp3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 8273 31 100.0 33 ............................... TCGGTATGAGCATCTGATGTACTTTTTATGCTG 8209 31 100.0 35 ............................... ATCAAATTGAGTGATAGGCATACCGCCCATTACCG 8143 31 100.0 34 ............................... TCAATGTGATGCGCTTCATCAAATACAACAACCG 8078 31 100.0 34 ............................... TATAAAGCACGATCAGCGGCGGCAACGTGCAACG 8013 31 100.0 34 ............................... CAAGAAGGGCGCAACAAAATCTGTATAAATAAGG 7948 31 100.0 34 ............................... AGAACCGACAAGAACCCCAACGCTCAGGGCAAGG 7883 31 100.0 34 ............................... TTCGTGAGCGGTAAAACCAATATCCCGCCTGATG 7818 31 100.0 35 ............................... TGCTGTAAAGGCGAAACCATCCTTTGTTCCGTGCG 7752 31 100.0 36 ............................... CCGGATGAAATCGACAATGCAGGGAAGGCGTCGAAG 7685 31 100.0 36 ............................... TATACTACGTATAGGTTTGCGCCTCTGCGAGGGCAG 7618 31 100.0 34 ............................... ATCTCTGCCGCCCTCAACAACCAGGTGGTGCACG 7553 31 100.0 34 ............................... CTTTTCCTGGTTATTGCGCTGGGGTTTATCCTCG 7488 31 100.0 36 ............................... TATCATCCGGCCAGTTTCAATGAAAAACTCCTCACG 7421 31 100.0 34 ............................... CCCCATTTGCGCTTTGTTTGGCGCATCTGTTTCG 7356 31 100.0 33 ............................... TTACAGCATTGAGGCTCATCAGCGGACTGCGAG 7292 31 100.0 35 ............................... CGTGTAGGTCTGCGGCTGTCACAGTCCATTTCACG 7226 31 100.0 35 ............................... CTGCTTCTCCCGTCACAGTCAGAATACCAACAGCG 7160 31 100.0 34 ............................... CCAAAACTGAAACTTACTGCTGGATTCTTACACG 7095 31 100.0 35 ............................... CATGAACTCACCCACAGCACCGGCCACGCCAAACG 7029 31 100.0 35 ............................... CATGAACTCACCCACAGCACCGGCCACGCCAAACG 6963 31 100.0 35 ............................... GGACATCTCCTCAAACACCATGCAGATCTGCGCTG 6897 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 22 31 100.0 35 TCGCACCCCGTGCGGGTGCGTGGATTGAAAC # Left flank : CAAATGCTCCTAACTTGGGGAAAACAGGTTACATAGCCTCAGTTAGAGATTTCCTGCCTGGCAGTGAAACAATCCCGAAAAAAGTATTTACCCCGAAGCCATGTGGTACAAACGTGGAAAAATTTGCGTGGGAGGAAGACTGATATGGGAAAGAATATTGACTATATGATGGAACTGGTGAAAGAATACCTATCAGGCAAGACTCCCCGGCACATATTTGAACTAGACTTTCAGACCGAGATCATAGCCCGTTATAAGAAGATGGTGCATGAAGACAGGGACCACGCCGAATATTTTTACGATGTGCTATCGGATGATGGTGTGGATGCAGGCGATGGTCTATCAGATGAAGAATATAAACGACTGATTAAAAGACAGTACAACAAGGTTAAAGATATTGGCAAAGGTGATCTTCGGTGATACCGATATTTAGTAAGTGCTAGCCTGTTTGACGCTTACTTGAAACCACCTACCTATAGCCATTACTGATATTACCGCCG # Right flank : CGACTGAAGCCGGTCCGAGTGTTCTATACAGCATGTAAGTTTGCACATTCTTTGTCCCTGATCTTTGCAGAATAAAAACCCCAAATTTACCTTGCAATCTGCAAAAATTGCAGGAACGATTTCCGAACAATTTGCACATTAGCAAATTGACTGTCTTTCAAATTAAATGGTTCAAAATAGATAAAAGAAAAAGGCCGGGATGGATACCGGCCCCGTCAAGAAATTACATTCCCAGTTCAACAGCAGCCTGCCTTACAGCATCCTCATCGATGGTCTTTAACCCCTTTTGATATCCGAAAATCAAGCTGGTGGTGGCAAGATTATTGATTAGACGCGGCCACCCACGACTGACTAGAGAAATAGCTTCAATTGCAGAATCAGAGAAAATCGGGTAGTTGGCGCCAGCCAGCCGCATATGATGTTCCAAATAACCCTTCGTCTCTTCCTTTGATAGGCCATCCATTTGGTAGCGCATCATCAGCCTTTGATTTAAAGGCTGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCGTGCGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.60,-5.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1148-4 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDRZ01000284.1 Syntrophaceticus schinkii strain Sp3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 1147 31 100.0 36 ............................... GCCAGCTGCGCTTCGGCGTTTGCTCGCACGCTGTAG 1080 31 100.0 33 ............................... CCGCCTCATCGTATACGGAATAGCCAGGGTACG 1016 31 100.0 35 ............................... CATCATAAACAGTGTATCACGTCACTTGTGCAGCG 950 31 100.0 34 ............................... ATGTACCAGTAATCCCGTTGATTTTCCCATGCCG 885 31 100.0 35 ............................... TATTCCTACATTGACTTTGATAAGGACGGTGTCCG 819 31 100.0 36 ............................... TGGAGGGTGAGTGATGAGATGGCCGAGGTGAGGTTG 752 31 100.0 34 ............................... CCTACCCCGTGAGTCCCGCTAATTGCTATTTTCG 687 31 100.0 35 ............................... CAGCAACTGTAAGCCAGAAATCCCATACCTATCCG 621 31 100.0 36 ............................... ACAATAACAAAGGCGATCCTATCTATGTGGAGATTG 554 31 100.0 34 ............................... CTCCCATATCTCCTTGGTCTCCATAACACCATTG 489 31 100.0 34 ............................... TGAATAGGGGTTAATGCACGCCATGTCTTGCTGG 424 31 100.0 36 ............................... CGAAGTATAAAGCGGCATTGGACAAGGTGGCCGCGG 357 31 100.0 34 ............................... ATCATAAGCAGCCAACTCATCACATATATCCACG 292 31 100.0 36 ............................... AGGCTTATATTGACCGGGTGCGCAACGAAGGCAAGG 225 31 100.0 33 ............................... CGCTCTATCGTCAACCGTGCAGAATCCTGGGGG 161 31 100.0 33 ............................... AATGCTCAATACGGAGCATATGCTGACATGCCG 97 31 93.5 32 .............................CA ATTAAACGCTCAATCCCGGTGCTTTTCTCTGG 34 31 93.5 0 .............................CT | ========== ====== ====== ====== =============================== ==================================== ================== 18 31 99.3 35 TCGCACCCCGTGCGGGTGCGTGGATTGAAAC # Left flank : TATAGAAGATTATCCTCCGTTTTTCTGGAAGTGAGGTGTTTCGTATGATGGTGCTTATCACTTATGATGTTAGTGTAACCACTTCCTTGGGAAGGAAACGATTGCGTCAAGTAGCCAAGCAATGCCAGAACTTTGGACAGAGAGTGCAAAATTCTGTATTTGAATGTCTAGTTGATCCAACACAATTTGTAGAACTTAAGCATCGTTTAGAGAGTATTGTAGACCCGGAAACAGATAGTTTGCGTTATTATAATCTCGGGGCTAACTGGAAAAGACGAGTAGAACATTATGGAGCTAAAGAAACCTATGATCCAGAAGGCATTCTTATTGTTGATGCGAATCCATAGCTAACATATTTTTTCAGGATGGTTCGCACCGCTTAAATATCAGGAGTTTTTGTACTTATTTTGTATCGTTCTTGAAAATAAGACTCTAAAATTATAGGTTCGCAATAAAAAAACTTTAGAAGCCTTGCTGGTAAGGGCTAATTACTATGGAAG # Right flank : TTTG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCGTGCGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.60,-5.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //