Array 1 33-300 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVSD01000006.1 Enterobacter bugandensis strain 153_ECLO 234_150809_4416105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 33 28 100.0 32 ............................ TTAACGAGAGCGACGATTTCCCGATCGAGACG 93 28 100.0 32 ............................ CTAACCTCACCGCGAATGTTCGTCACCATGTC 153 28 96.4 32 ................A........... TTCAATCGAATTAACCGACAGTACCGGGAGTA 213 28 89.3 31 ...........C...C......C..... ATAGAAAATAAGGCCTAACAGTCGTCGCACC C [238] 273 28 75.0 0 ........T..A....A....CCT...G | ========== ====== ====== ====== ============================ ================================ ================== 5 28 92.1 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACGTATACCCGACTGAAAATTAAAATGGCGGCG # Right flank : GCTGGAACGAACGGCTAAATAATTGTTCAAATAATCAACAGCACCACTAAAAAATAAGGCCGGGAATATCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAAAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTATTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGATTAAAACGCAGCAAAACAGTTTCGGCGCATTGCCCAAGCGTCACGGTACAACCGAACAGGAAGCGCATTCGTAAAGGGGAGACAACA # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1445-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVSD01000007.1 Enterobacter bugandensis strain 153_ECLO 247_94786_2810043, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1444 28 96.4 32 ............T............... TGATAGCTCAATGGTTCCAGGATGGTGAGTTA 1384 28 96.4 32 ............T............... GGAGTTGGGGCGACGAACGCTGCCCGCCCGGG 1324 28 96.4 32 ............T............... CACAGTGTCCCGGCTCCGCAACGGTAGCCCTT 1264 28 96.4 33 ............T............... AACGTTTAGCGGTTATGCCTCGCTTTCGTGGCC 1203 28 96.4 33 ............T............... TGGCGATGCTCGCCGGATGCACGCATACAACTT 1142 28 96.4 32 ............T............... TGTGACGGAGGAGGCGCTGTTGGCTTTTCCGG 1082 28 96.4 32 ............T............... CGCACACGATCCAATCATCGTACCCTGGGAAA 1022 28 96.4 32 ............T............... ATTTTCACCAGCTCCGCCACGGTCTTTTGTGT 962 28 96.4 32 ............T............... GCCGAGATTGTCCCGGCCTGGTGCGGGATAAC 902 28 92.9 32 ............T.....G......... GTCAGCGCACGCGCTACAGCATCGTTATCGCC 842 28 96.4 33 ............T............... GTTCGCCGGGTCATGCTCTGTGGCTCTTAATAT 781 28 100.0 32 ............................ GGAATTAAGCAGGGTGTTGCGCTGGGTTTTCT 721 28 100.0 32 ............................ TGATCCTCCCTCCTGCCTGTCCTGCCTGATTT 661 28 100.0 32 ............................ GCTGCGTGCGTGACAAACAGCCGGAGCCGAAC 601 28 100.0 32 ............................ AATCATCCCAACCGGTCCTTATCAGAACGTAA 541 28 96.4 32 ........................A... TGGGTAGCTCAACGCTTGCTAACGCAATCCAC 481 28 100.0 32 ............................ GGAAGAGGCGCGGAGAGTGCTGGAGGACGTGA 421 28 100.0 32 ............................ GGTATAGCAATCGATGCCGAGAAAATCCTTGC 361 28 96.4 33 .......A.................... AAAAGGATAAGTAGGAGCCGGGGCCACCCGGCT 300 28 96.4 32 ..........A................. ATACATGCCGACAAGCGAAACCGCAGATTTTA 240 28 100.0 32 ............................ ATTTCTAATGAAGCCTCGCGGGAAGCATCGAT 180 28 100.0 32 ............................ ATCATGGAAGCGGCGTTATTGCTGGGCGGTCA 120 28 100.0 32 ............................ GTTCCGCGAATAGTTCCACTGCGAGTTCCCTT 60 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 24 28 97.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGGGCTACGCGTTCGCTCTCATCCGGCGTCAGCGTCCGTCCCGCGCTTTTGCGGCGGGCCACGTTACGTTCATTAATCCCGGTAACGCGCAAAATGTCCGCTTTTGACATGGCCGTCCATTCATGAATATTGTCGAGCACGCTGACGGGTAATCCCTGGTTGAGAAATTCTATCAGCCGCATACCTCTGTTCGCGGGTAAACCGGCGTAGCGCCAGAGTGCGTTATCAGCAGGTTTCTTGGCGGGGATCCAGGTTCTCATGTTACCTCCTGATTAATGTCATTTGTCATGGTTAAGTATAGCCATTTGTCAGATGGAGTGGAATGGGGATTTTTTGTGCTGGGTGGTTTGTGAGAAGAACGATGTTTTGACCCTAATTTTTATCCTACTTGTAATGCTTTGATTTTACATGAAAATTTTGAGTGGATGAAAAAGAGGGTCAGAGAAGGTTTTTTAGCTTTTTTTGTATGCAAATCAGAAGGGTGTGGAGATATTATTTCA # Right flank : AACGTATACCCGACTGAAAATTAAAATGGCGGC # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTGCACTGCCGTTCAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 12021-11332 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVSD01000007.1 Enterobacter bugandensis strain 153_ECLO 247_94786_2810043, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12020 28 100.0 32 ............................ TCAGCCAGCACGAAGCCAACCGCAGACGATAT 11960 28 100.0 32 ............................ ATCCTGACTATCACCTCCAACGTGGTCTACGG 11900 28 100.0 32 ............................ ATCCACTCAGCATCAAAAATGATTTGCGCCAT 11840 28 100.0 32 ............................ ACGTTCCGTTAACGTAGTTGTACGTTAGCGCC 11780 28 100.0 32 ............................ TGCCAGGGGGTTAAGCAATTTAAGGAAAAAGC 11720 28 100.0 32 ............................ AGGGGCTAGGGCTACCGGGAATCGTGGTTAAG 11660 28 100.0 32 ............................ GCGCTGGGCGAGCGCTACGGGCACTTCACTGA 11600 28 100.0 32 ............................ AGATGCTATCCCGCCCGTGGACGCAGTCTATG 11540 28 100.0 32 ............................ TCTTTTTGCTCCTTTTTGTCATCCGTTGACAT 11480 28 100.0 32 ............................ AGCTGTTCGCCGGTCATTGGTTTATTGGCTGT 11420 28 100.0 33 ............................ CGTGTCGGAAGAGGGACAGGGAAACGGGGCGTT 11359 28 92.9 0 ................T......T.... | ========== ====== ====== ====== ============================ ================================= ================== 12 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACTTCCGCAAACGCAGCCCGTTTGCCGTTGTCTCGGAGCCTACCTGGAAGAGGTGAAATCCGGCCTCACAGAATCAATGCGTGATTTTCAGGTGGTGGAATTTGAGGAAGAAGCGGAACAACCGCGACAAAAAGAGTGGTTGCTTGAAGATACAGAAACGAAGTGTGATTACTGCCGGGCGTTGAATCATGTGCTGCTGGTGTCGCATTTTGACCGCGACATGCTGCCGCTTCTTACAGGACTGCTCCATGACATCACGCATTCTATGGTTGCAGATGTCGTTGCGCCTCAACGTGCAGAAACGGTAGTTCACATTATTTCCTGAATGTAGTTTGTGACGTCCGAAGTAGGCCCCTGACGCCACCGGCTAGACCCTTTTTTTTGATGATTACGTAACCTTTTGATTTATATAATGCGAATTTACGTACCAGAAAAAAGGGTTTTATGCAGGAAGTTGATTATTTTCTTTTCTAACAATAAGATGGCGTAGTTTCCTTTCA # Right flank : GCCCCTCTGGGCTTTAATGCCGTGGAAATAGCGTTACTGTCCCATAGACAGTACAAGTAAACCCATTCCTCACAAATATTCATCTCGTCTATTTAAAACGAAATACCATCATCCACACGCTTTCCATTTGCAGATTAAATAAAAATCCCATTCAGGGGTTAATTATATTTCCGTGTATATATTATTTGTAAAAATAATACTTTTAAAAAAGGTTGTATTTTTGTTGAGTTATCACAGAAATTTCCATTCATTTGATATATATCACATTTGTATTTCTCTCATCTCCGATAACATATCCGCATTCATTACCTTGAAATAAAAGCCGTTGCTATGCCTGCAAACAGCGTTACCCCAACAGATTTAAAAACCATCCTGCATTCAAAACGCGCCAACATTTATTACCTGGAGAAATGCCGCATCCAGGTGAATGGTGGGCGTGTTGAATATGTCACCCAGGAAGGGAAAGAGTCTTTTTACTGGAATATTCCCATCGCGAATAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 27093-26823 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVSD01000007.1 Enterobacter bugandensis strain 153_ECLO 247_94786_2810043, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 27092 28 100.0 33 ............................ GCCCGTAGCCAGGACTGGCAGCGCCGCCGGGTT 27031 28 100.0 32 ............................ ACCCACCCCCCAGGCTCCCGAACGTTACGAGG 26971 28 100.0 32 ............................ AAGAACAACCTGATTTCCGGTAAAGCAACTGG 26911 28 100.0 32 ............................ TGAGCGTTGAAGTAATCAACCGGCCCGAGTGC 26851 28 89.3 0 .....................A.GC... | C [26825] ========== ====== ====== ====== ============================ ================================= ================== 5 28 97.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTCACGGTTTGCATAAGCTGTTTGGCGGCGTGGGCTTTATCAGCGACATGCTTGTGGAGAAAGGGCTGCCGGGATTTATTGCCTACGGCGTGTTGGTTGGCGAAGTGGTGGCACCGATCCTGATTATTGTTGGGCTCTTTACGCGCCCGGCCGCGCTGGTGCTGGCGTTTACGATGATCGTGGCATGGCTGATGGTGGGAATGGGTGAAACGTTCGCGCTCGATAAGGTTGGGGCATGGGCGATTGAAAGTCTGGTGTACTTCTTTGTTGGCTCGCTGGCGGTGGCGTGTTTAGGGGCAGGGCGGTTTGCGTTAGGGAAAGCGCCTGCGTGGCAATAAAGCTGGGTACTGAAAATATAAGGGTCTCTGGACCCTTTTTTATTGGTGGTTTTTAAGTCTTTGATTTTATTAAGCAGAATTATTTGTGATGAAAAAAGGGTTTAAAGGGTATTTTTTAGGGGAATTCTTTATCTGACAAGGTGATAGGTGTAGATTGTTCCA # Right flank : TGTAGGCCGGGTAAACGCAGTGCCACCCGGCAAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACGATCGAACGTTTATTGCTTATGCGAGGACCAAATCCCCCTGCGGATGGCACGAGCACGCCAGCACGTAACCCTCGGCAATTTCCGCGTCGGACAGCGTCATGGTGCTGGTGACGGTATATTCCCCGGAAACCACTTTCGTTTTACAGCAGCCGCACACACCCGCACGGCAGGCCGCGACTATCGGCACCTTGTTGCTTTCCAGCACTTCTAGCAGCGTGGTGCCCACGCGGCCAAAGAAGGTCTGTGCGGGCTGCAGTTTGGTGAACTGAAACCCGCTGGTTGCCGCTTCCGCCACCGGCGTGAAGAACTGCTCTTTGAAGAAGCGGGTCACGCCAAGCGCTCTAACTTCTTTCTCCACGATATCCATGTACGGCGCCGGGCCGCAGGTCATCACGGTACGGTTCGCAATGTCCGGCACGCTTTGCAGTAGC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //