Array 1 5325-6389 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDTS01000007.1 Salmonella enterica subsp. enterica serovar Braenderup strain 22 NODE_7_length_274949_cov_16.8218, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5325 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 5386 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 5447 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 5508 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 5569 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 5630 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 5691 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 5752 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 5813 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 5874 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 5935 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 5996 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 6057 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 6118 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 6179 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 6240 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 6301 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 6362 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 97.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22648-24754 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDTS01000007.1 Salmonella enterica subsp. enterica serovar Braenderup strain 22 NODE_7_length_274949_cov_16.8218, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 22648 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 22709 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 22770 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 22831 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 22893 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 22954 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 23015 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 23076 29 100.0 32 ............................. CTAGGCACTAACTCGCAGTATCACTCCCTGCC 23137 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 23198 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 23259 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 23320 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 23381 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 23442 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 23503 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 23564 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 23626 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 23687 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 23749 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 23810 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 23871 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 23932 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 23993 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 24054 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 24115 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 24176 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 24237 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 24298 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 24359 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 24420 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 24481 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 24542 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 24603 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 24664 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 24725 29 89.7 0 A...........TC............... | A [24751] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //