Array 1 163059-161063 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWOD01000047.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGDFood2016001 scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================== ================== 163058 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 162997 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 162936 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162875 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162814 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162753 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162692 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162631 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162570 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162509 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162448 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162387 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 162326 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 162265 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 162204 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 162143 29 100.0 46 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCGGTGTTCCCCGCGCN 162068 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 162007 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161946 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161885 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161824 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161763 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161702 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161641 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161580 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161519 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161458 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 161397 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161336 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161275 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 161214 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161153 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 161092 29 93.1 0 A...........T................ | A [161065] ========== ====== ====== ====== ============================= ============================================== ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181914-179566 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWOD01000047.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGDFood2016001 scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181913 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181852 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181791 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181730 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181669 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181608 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 181547 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 181486 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 181425 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 181364 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 181303 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 181242 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 181181 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 181120 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 181059 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180998 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180937 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180876 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180815 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180754 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180693 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180632 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180571 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 180510 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 180449 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 180388 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 180326 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 180265 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 180204 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 180143 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180082 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180020 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 179959 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 179898 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 179837 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 179776 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 179715 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179654 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179593 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 39 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //