Array 1 8214-9017 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXFF01000038.1 Candidatus Arthromitus sp. SFB-turkey isolate UMNCA01 contig_8697_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================================================ ================== 8214 32 100.0 34 ................................ TCTTACCGTGTTAACAAATTCTTCTGCTGTTTCT 8280 32 100.0 33 ................................ AGAGGTTGAAGATTTTATTAATCTTATTAGAAA 8345 32 100.0 33 ................................ ATCTTTTACTTTTTGTAATTCTTCACCTTGCAA 8410 32 100.0 34 ................................ TTGTTTCATGTCTTTTAGGGCGATTAGAGTTCTT 8476 32 100.0 34 ................................ CCCTTTGGTACGTCTGGGTCATCTAACCATGCTT 8542 32 100.0 34 ................................ ACTCAAACTACAACACAACAAACTCAACCACAGC 8608 32 100.0 34 ................................ TATGCTCCTTTATCAACAACAAGCGATAAACTTG 8674 32 100.0 34 ................................ TAACCCAACTAAGGATTTTAACCCTTTTGAACTT 8740 32 100.0 80 ................................ TAAAGGTATATTATATTTATCCATCAAATATTTGTCGCACCTCACGTAGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNN 8852 32 65.6 34 NNNNNNNNNNN..................... GAAAATTATTTAAGGGGGTATACATTATGGTGAT 8918 32 100.0 36 ................................ TCCTAATTCATCTAAATATATACTTACTTTTGATGG 8986 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================================================================ ================== 12 32 97.1 38 GTCGCACCTCACGTAGGTGCGTGGATTGAAAT # Left flank : AATATCCTCCGTACTTAATGAAATAAACAGAGGTGATTAAGTGCTTATTTTAGTAACTTATGATGTAGAAGTTAATTCTGAAGATGGAGTAAAAAGACTTCGTAAAGTTTCAAAAATTTGTGAAAATTATGGTATAAGAGTTCAAAATTCAGTTTTTGAATGTATTGTTGATAATTTACAGTTTGAAATGCTTAAAAGTGATATTAGTAAAATAATAGACAAAACACGAGATAGTGTTAGATACTATAATTTAGGAAAATCTGGAAAAAGAAAAGTGCTTCATGTAGGAGCTAAACCTTCTATTGATGTTGAAGATATTATTATAATTTAGTTGCGAAATATAAGTGTACATAAAATTTCTGGAAAGTTCGCAAGACTATATAATATTTGATTTTAACAAAATAATTGATATTGATATCTACAAACAAATTATGTAGAATATTATTGTTCGCATAAATGGAGTTTCTATTTATGATGGATAGTTATTTTTAACTTTAACA # Right flank : TTCTATCTCATAAATTCTATTATTAAACTCATCTGTCGCACCTCACGTAGGT # Questionable array : NO Score: 8.79 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:-0.31, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACGTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTTACGTAGGTGCGTGGATTTAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //