Array 1 899641-900006 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSOY010000007.1 Streptococcus equi subsp. zooepidemicus strain SEZ_19-056 tig00000162, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 899641 36 100.0 30 .................................... TTGACAATGATTACTGAAAACGTAGTGAGG 899707 36 100.0 30 .................................... CATTGTCAAGAAGCTTTCCACAAAATAGAT 899773 36 100.0 30 .................................... CTAAGCCAAAGCACGTTTTAAACTTTGCTA 899839 36 100.0 30 .................................... TATCCTTATTTCTGACACAATAACTCTCAT 899905 36 100.0 30 .................................... CAAAGGAGCTGTTATTCTAGATCCTTTTAT 899971 36 83.3 0 ..................T......A...TT..T.T | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 97.2 30 GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Left flank : TTACAGGTGTTTAAATACCTCACAAAAAAGAAATTATTAGTTTTTGTTAACAGTGGCTCCTACTTTACTAGAGAAGAATTTGAGCAACTAAAAGAATATGTTGAATTGTCAAATCAAACTGTTCTCTTTTTAGAGCCAAGACCTCTGTATGACTTCCCACAATATATTTTAGATGAAGATTATTTTTTAGTTACACAAAATAAGTTAGAAGGTATTGAACATTAAGGATAGGGTAAGTGTTTATGTTCTCTTAGAAATCAACCGTCCAGTCAGGTAGCGGTTAGTTAAGCTCTCTAAGTAGATGAAAGTTGGATTAATCATGTATCATAGCTGGTAAATTAAAGATTGACGATAACAAAATGGCTTGGGATAGGGGAAACCATTGAGATAATATACTTCTTGAGTTATAATCTTGATAGTTCAAAGATTATTTGCAATTGAAGTTTAGCCACGACAAATAATCTGATAATGACGTCTTATAGCAAAAGATGGTCTACGAG # Right flank : TCCGTAAATGATTAAAAGGTAACAGTTGCAGTAGTAATTGGTCTTCATGCTTGCTATTAAGCAAGTAACGATTGCTAATGATGGGTAATACTACGATAGTGATTGTCATTGTATGGCCTCTTTTCTGCTGGCATAATGGGGACAAATTAAGGGAACTGTAACTTCCCTTTCCCCACCAAAGGGGATTTATGCTTGCGATAGCTTAGGTTGTCGGTCAGGTTAATCAATATTTTCAGGTAAGATATGTTTGATGTAGTGGTTGTTGAGGAAATTACCCTTATTTTTATTTTTCTACCCTACTACTGGCAGAAAATGACCATAGAATGAACTGGTCTGTTTAATCTGTGATTTATCAAACGATTGTCAATCTTTTGGCAATAGCTCGTTTGCTGTTACACCAAAAATGTTATGCAGCTTGATTAACTTTTTGATTGGAGCTTTGCGCTGGCCATTTTCTGTCATACTGAGAGTTTGTTTGTTGGTTTCTAGTAGCTCAGCAA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 448827-450655 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSOY010000002.1 Streptococcus equi subsp. zooepidemicus strain SEZ_19-056 tig00000020, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 448827 32 100.0 34 ................................ ATACGTGCTATTGCACGCATCTTACCATAATTAT 448893 32 100.0 35 ................................ ATATCGCTCCTCTAAAGCAATTAAAGAACCAACCG 448960 32 100.0 34 ................................ CATAAGGAGACGTATTGGGGATGTTAGGCATGTC 449026 32 100.0 35 ................................ TCAGGAAAAACTCCAACTCCTTCAGAAGAGTATGT 449093 32 100.0 35 ................................ TGATTAACAATGGTTGTATCACTTGCTGTTATCCA 449160 32 100.0 35 ................................ TACTGCCATAAAGCAAGAATTTTTATCCATTGTGA 449227 32 100.0 33 ................................ TACTAAGTCTGAAATACCAGTACCGCGTTCGAT 449292 32 100.0 35 ................................ TTAAATCCTTTCGTTTTTTGACTTTTGGACGAGGT 449359 32 100.0 34 ................................ ATTTAACTCAAACAGAGCTTCTACTGTACTCTCA 449425 32 100.0 34 ................................ TGTCAGGTACCCCTATCGTCCCTGGACTTGTGAA 449491 32 100.0 34 ................................ AATAAAAAAGGTAAACAGAAGATATAGGGTTACG 449557 32 100.0 35 ................................ ATGGAAAAGTATGAACTGACCTCAATCGCTGACGA 449624 32 100.0 36 ................................ CTGTCTGAGCATTAACATTATTAGCCATCTGTGTGG 449692 32 100.0 35 ................................ ATGCTCTTTTAAGCGCGTACCTTTTGTTTCGAGAT 449759 32 100.0 36 ................................ TCTCGTGACATCATCTAAGAAGCGGTTGTCTTTATA 449827 32 100.0 37 ................................ GCAATGTCTTGCAATATCTCCTAAATTTTTCCAATCA 449896 32 100.0 33 ................................ AACTGTTCCCCTCGTTTTTCTTGTAGTTTTCCT 449961 32 100.0 34 ................................ AAAAAGTTTTGGTAAATCCGAGCCAAATAATATT 450027 32 100.0 35 ................................ ATACTCAAAGAATTTAACATTGTGGGCTTCGTCAG 450094 32 100.0 34 ................................ CAGAATCAACCGAAGCCAAAGCTACTGAGACTAA 450160 32 100.0 38 ................................ AAACTTTACAAGACCTCTACCAAGATTTGCTTCCACAA 450230 32 100.0 33 ................................ GTATGCGTTGTAAGGATTGCGGTTGTAGCTGCC 450295 32 100.0 34 ................................ TAGCATTAAGTCATAAACTATCTCAAACAATTCG 450361 32 96.9 34 ...........T.................... ATTTTGTACCTCGCTTAACTTCTTCAACAATTTC 450427 32 100.0 33 ................................ AGCAGCAGCAGGGAAGGTTAGGTGATATTAAAT 450492 32 100.0 33 ................................ AGGAGACTGTGGCAGGGGTTGTGACAGGCCTAA 450557 32 100.0 34 ................................ TGACAACAATGTGCAAAACACAATAACTTGACCT 450623 32 96.9 0 .....................T.......... | T [450653] ========== ====== ====== ====== ================================ ====================================== ================== 28 32 99.8 35 GTCTCGCCTTTCATGGGCGAGCGGATTGAAAT # Left flank : AAGGCTATTCGAGGGGATATTGATAGTTACCCACCTTTTATGATTTAGGAGACTGGTTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCAGCAGGGCGAAAACGACTACGTCAGGTAGCAAAGTTATGTGTTGATTATGGCCAGCGTGTGCAGCATTCAGTATTTGAGTGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATACGGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCATTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGCGAGTGCGAGCCTGGATCACTCATAAAATGCTGGGAGGCTCGCGCTAAAATAAGCTAAAAAATGGAGAAATGAGGGGTTATAGCTGAATATGTTAGTAGCTAGCCTATATCATTTCTCTATAAACTGTGCTATATTGCGCA # Right flank : TGCGATACGTGACTTTACGATGTTGCGACTCCGTCTCGCCCTTTGTGGGTGCGTGGTCCGTATTCTTTGTTTTTCATGAAGGGATAAATTATATCGTATTCATCAAGCTGATTTATGCTTTTTATGGTGCTATGTCAAATAGATAAAAACCAATCTGAGGTTGTTGAACAGGATTGGTTTTTTCTTGTGATTGCAGATCAGACTTTTCAAAAGAACAAGCACATCATCTCAGCTAGGCTGGTGCTTGATAGCTCCTGAGCCCTTGTTTGCTGTAGCTGATAGGACTTTACTGATGGCCTAGTAAGGCATATCGTATCAAATTCAAGTTTTTTCATGTTACTGTCTATAGTTTGTCTGCCCTACTTTAGGTAGAATAGAGGTAACTTAAGAGAGGAGTTTATTATGGAATTAACGATGCTTTTGATGGTTTCAGTTTTCATTGCAGGGCTGTTATCATTCTTTTCCCCTTGTATCTTTCCAGTTCTGCCGGTGTATTTAGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCGCCTTTCATGGGCGAGCGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA //