Array 1 64431-63504 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEUW01000025.1 Salmonella enterica isolate STY156, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 64430 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 64369 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 64308 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 64247 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 64185 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 64082 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 64021 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 63960 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 63899 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 63838 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 63777 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 63716 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 63655 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 63594 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 63533 29 96.6 0 A............................ | A [63506] ========== ====== ====== ====== ============================= ========================================================================== ================== 15 29 99.5 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 114762-116254 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEUW01000005.1 Salmonella enterica isolate STY156, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 114762 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 114823 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 114884 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 114945 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 115006 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 115067 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 115128 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 115189 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 115250 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 115311 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 115372 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 115433 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 115494 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 115555 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 115616 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 115677 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 115739 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 115800 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 115861 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 115922 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 115983 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 116044 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 116105 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 116166 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 116227 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //