Array 1 535354-536482 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKSF010000002.1 Metakosakonia massiliensis isolate MGYG-HGUT-01426, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 535354 29 100.0 32 ............................. CCGAGATGCTGGACTGGCGTAAGCGTACTGAA 535415 29 100.0 32 ............................. TTGAACTGTGGGAAGACCCAATGAGCATGTAC 535476 29 100.0 32 ............................. AATGCTTTGTGTATTATTTCTGCATTCTGATT 535537 29 100.0 32 ............................. AGGATACAGAGATTATCTGGGTGGCGTTCGGG 535598 29 100.0 32 ............................. TAGAGCAGCAGTCTTTGTTAACTCTTCTTCTT 535659 29 100.0 32 ............................. CTGCGGCTGTTACCAATATTGCTGAGCGCACG 535720 29 100.0 33 ............................. CTGCCGGACATCGCCACATACCACGGCGCGTGC 535782 29 100.0 32 ............................. TACGCATTGTGGTTAATGACTGACAAAATTTT 535843 29 100.0 32 ............................. GTTTTTAAACCCGACCAGGCCATCCTGCATTT 535904 29 100.0 32 ............................. GCAGGGCAATTACGCTTTAAAATTACCGATGA 535965 29 100.0 32 ............................. TTCAGCGTCAGTTTCCATGCCGTAGCTTTCAC 536026 29 100.0 32 ............................. CAGCCGCGCTGATTATCGCCGAAATTGAACGC 536087 29 100.0 32 ............................. TCACTGAGCCGCGCATTTGTTTTCCTCCGGGG 536148 29 100.0 32 ............................. ATATGGGCGGCATCAAAGACATTCTAAAACTC 536209 29 100.0 32 ............................. GACGCTACAGCAGCTTTTGTTGCTGCATCCGC 536270 29 100.0 33 ............................. GGTGAGCGCGTAGGTGAAGATATCTGGCTCAGA 536332 29 96.6 32 ............T................ TTGGCTTTAGCTGCTCTTGATAGCGAAAAGTC 536393 29 96.6 32 .......T..................... CCGGTTGAGGCGGTGATCGAGATAAAAGAAGA 536454 29 93.1 0 .............A.A............. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.3 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GTTACCGTCTCGCCGAAGGTCAATATGCGCGGCGGATACGATATTCTCCAGCAGGCGCTGGAGCGTGCGGATGAAATCAAACATCCGGTCGGGCGCACCCGCGATATCGAAGCCCTGGATGAACTGCTGGCGAAGCTTACCGACGACAAACATCGCGTCATCTCCCTGCAGCCCATCAGCCAGAAAGAAGATGCCACGCGCTTATGCATTGAAACCTGCATCGCCCGCAACTGGCGCTTTTCCATGCAGACCCATAAATACCTGAATATTGCCTGACGGCTGGCTCAGGCAAACATATAACGCCCGGCGTAACAAACCGGGCGTTTTTTATGGCGAAATTTGGCGGGTTTTAATTTTGCCTGGTGAAATGCGATACCGCCCGCAGCACTGTTTTAATTATCCTGTAAAATCAACATATTAATGTTCTTTAATAACAGGGAAAAGTTGGTAGGATTTTGATGGTGGGAAAAGGTATTTAGATTCAATTAGTTATGTTTAGA # Right flank : GAATACATTACCAACCCAGCCGCAACCTATTCGCCGCGATAAACACAGCCAGCCGTGCAGGTCTCTTTAATCATCACCGCGCTCAGCAGTGGAACCGCAGGCTTCACCTGCTCCCAGATCCAGCGGGCCAGCACTTCGCTGGTCGGGTTTTCAAGGCCGGGGATCTCGTTTAAATAGTAATGATCGAGCCGATCGTAGGTGGGCTTAAACGCCGCTTTCAGCTCGGCGAAATCCATAATCCAGCCGGTATGCGGATCTACATCGCCCGTGATTTCCAGGCGCACCATAAATGAATGACCATGAAGACGACCACATTTATGGCCTGCGGGAACGTGCGGAAGGTGGTGGGCGGCTTCAAACATGAAGTCTTTGAATAAGGTGGTAGACATACTTGGCTCTCTGGCTTAAAAAACCGCCGCATGGTAGCCGAAATGACCTTTTTTAGCATTAACTAAAACCGCCAAAAGCGTCAAGCCTGCCGAAAACACCACGGGTGATAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 541720-542360 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKSF010000002.1 Metakosakonia massiliensis isolate MGYG-HGUT-01426, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 541720 29 100.0 32 ............................. GCTTCGAACGATTTAATAATCGCAATGCCGTG 541781 29 100.0 32 ............................. TGTATCCGCATCAGGCCATGTACCAGAGGAAG 541842 29 100.0 32 ............................. TTAACGAGGCGACGGCAGTGTCGGTAACCGGC 541903 29 100.0 32 ............................. CAAACCATGTGGCTTCTCCGACCGGGGCGGAG 541964 29 100.0 33 ............................. CCGTCGTTGGTTTCGACTAACTCCGCTCCTGGC 542026 29 100.0 32 ............................. TGAGGCCAGTAGATTTCTCATGAACAGTAAAA 542087 29 100.0 32 ............................. CGCCGCCTGCCGTCTAAGTTAGAGGCTGATTT 542148 29 100.0 32 ............................. AACCTTGATTTGGTTTGTTTTGAGGCGTAATT 542209 29 100.0 32 ............................. TGAACAGTGCGGCGTTTCGCGAGTTTGCCTGG C [542218] 542271 29 96.6 32 ........................G.... GATCGGGTGGTACCGGTGGGCCATGAGGCGCA 542332 29 75.9 0 ..T..........C.........GGC.AC | ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.5 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : TTTGCCGGCCTGCGCCGGGAGCAGTCGGGCAGCCGTGCTAACCTGCCGGTGCTTGGCATCCAGCGCGGTGTCTTCAAGGTGCTGCCGATCATCGACTGGGACAACCGCACGGTTTACCAGTACCTGCAAAAGCACGGCCTGAAATACCACCCGCTGTGGGACCAGGGTTACCTCTCCGTTGGCGATACCCATACCACGCGCAAGTGGGAACCGGGCATGTCAGAAGAAGAGACCCGCTTCTTCGGCCTTAAACGCGAGTGCGGGCTGCACGAAGGGTAAGTTTTTAATCAGGTTGAAACCGGACGCCTGGGCTAACGCCCGGGCGTTTTTTATTTCAAAAGTGAAAAAGCAAAAAGCTTTGGTGAAATGCGATATCGTCCGCAGCGCTATTTTACTTTTTCCGTAAAATCAAAGAATTAGTGTTCTTTAAAAAACAGGGAAAAGTTGGTGGAATTTTGAGGGTGGAAAAAGGGATGTAGATTCAATATGTTATGCTTAGA # Right flank : CTGAATTAACCAGCCTCTATGTCCCCCATCAAACCAACGCGCTTACTGTAATACGGCGCCTCGCCATTTTTATTAACCAGAACGATATATGCTGAGGGACGATGCTGACTCTTCCGGAAAATTTCTAATATTTCTTCACTGGGGCGAGACAGTTTCTCATGATGTTTCCGCCACCATGACTCCCGTACAGAAAGGCGGCTTTTCTCCCAGCGAAACTCGCTATCCCTGGCAACGGGTTGTAACCGATCGTCTGCATCCAGCCACGCCAGATAAATATCCAGACTTTTTTCACCTAAGCGTGTTGAAAGCTCGATATCTTCATCCCACCGGAAATCACTGGCCTCCCGGTCATAACCCTTCTCTTCACGTAACAAGTGCTGACCTGCAACAGAGCGGCGGCTCAGAACCTTACCAAACTCCAGATCGGAGACGGTTTGTAGTGCGGGCGGGGCTTCAATTTTTTGCTCATAAACGCCATCTACCAGCCTGCGCGCCTCCTC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 551245-551822 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKSF010000002.1 Metakosakonia massiliensis isolate MGYG-HGUT-01426, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 551245 29 100.0 32 ............................. GTTATCAGCCACACACTGTATGGCTTCTTGAT 551306 29 100.0 32 ............................. GGCATCAACAGTGGGACCGTTGACAGGATTCC 551367 29 100.0 32 ............................. CCGGGTCTCCCAGATTAGAAATCCGGTTCCCC 551428 29 100.0 32 ............................. AGCTTCTTGGCCGTTCGCCAAATAATGCTGAC 551489 29 100.0 32 ............................. CACGGTTACTCAGAACGGCAGTGAGGTTTTGA 551550 29 100.0 32 ............................. CCGATGATTTCAGCCAGGGCGTCAGCGTTAAA 551611 29 100.0 32 ............................. CCCAGATTTTTCAGCGCGCCAGGCGCACTGCC 551672 29 100.0 32 ............................. TTTTTAACTATTCATATGAAACTGGCGAATAT 551733 29 96.6 32 ..A.......................... CGGTTTGGCGTCAGCATTTTATGCTTCACGGC 551794 29 75.9 0 AGC........CTT..............C | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGACGTTCTTGCCGCTGGCGAAATAGAACCGCCTTCGCCTCCCGCTGATGCGCAGCCGATAGCCATTCCACTTCCTGTTTCTTTAGGCGATGCTGGCCATCGGAGCAGCTAATCATGAGCATGTTAGTGGTAGTGACGGAAAATGTTCCTCCGCGCTTACGCGGCAGGCTGGCGGTCTGGTTACTGGAGGTTCGTGCAGGTGTTTACATTGGTGATGTTTCTACACGCATCCGTGAAATGATATGGCAACAGGTCGCTACTCTGGCGGAAGAGGGAAATGTTGTTATGGCCTGGGCGACCAATACCGAATCAGGTTTTGAGTTTCAAACCTTTGGTGAAAATCGACGAATTCCAGTAGATTTTGATGGACTACGCCTGGTGTCGTTTATGCCTCTTATAAATCAATAGGTTAACGGTCTTTAAAAATATGGAAAATCTGGTGGAATTTGAAAGCCTTAAAAAGGTTATTAAATTCAATTGGTTACTTTTAGA # Right flank : CATCTCCATCTTCATTCCCATCAATATGTCCGATTTCGGACAAGTTCCGTCTCCCTTATTTTGGTATCGTAAGCAAGCCATTGCGGATGGCATCTTATTTTAAGAACTCAGGGATACTTTAATGAAAAAAATTCTTCTCGCAGCACTGCTGACCAGCTTGTCTGCCTCTTCCTTCGCTGAAACTGAACTCTGCAAACAATACTTTGCTGAAACCGATACCTTTATTAAAGAGGCATCGAAACATGAAGAGGCAAAAGCGCAGGTTGATATGCTGAAAACCCAGCTGGTTGAAACCAAAAAACAGCTGGAAGCATTAGCCCCGGCGCAGCAGGATGCGGGATGCCAGCAAGGGCTTGCGGCAATGAAACAGCTTAATGCGGCCATCGGCATTAAATAATCAAAGGTGAATTTTATTCCCTTGTATCATTAGAAATTGTCATCTTATTTATTACAGGCATAGCGTTTTATGCCTGTTTTTTTGCGCGCTTTTAAAAGGCATC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //