Array 1 1077489-1077696 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYQC010000001.1 Serratia rubidaea strain CFSAN059619 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1077489 28 100.0 32 ............................ CTGTCCGGTGCGGATGTGATGGATTTCTGCGG 1077549 28 100.0 32 ............................ AGAACCAGGCCGCCGAACGTGCGGCCAGCTCG 1077609 28 100.0 32 ............................ ATTACCCCGAACTCTGTTTTCGGCTTGCTGTA 1077669 28 96.4 0 ....................T....... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATTCGGGAAGGTTTGCTGCACTTCGGTGCGCACCACTTTATCTGCGCCACCGCACACTGCTGCGGCATCAATGGTTTTCTTCTGGCCAATGCCGGAGACAAAGAAGTGGTGAGTGGTGGTCTGCTTAGGCGCGGCGACCGTTTGGTTTTTCATCGTGAACGTCTGCTGTGCACAGCCGGTAACCGTCATGGCAAGGACTACGGCGGCGAGTAATTTTTTCATTATTTTCAATTCCTTTTTAATCAATCAATATAAAGCGCGGGGATAATGCCACGCTTACAGAAATTTACAAGTGTGGGTGACAATAAATAGCGTGCTAAGCGAGGAGGCTTGCGCGGCAGAGAGCGGCAACGTAGGGTTGCGCCAACAACCCTTTTTTTAGCACTATGCGTAACTTATTGATATCTAATGAGCGTCTGAGCAGGCGTAAAAAAAGGGTATCAGCGGCTGAAAAGGGGAAAAAGCTTTAATTATTAAGCCGCTGGCCTTAAACTCTAACA # Right flank : AAAAACACTATATTTTCGTGACCATCTTTATATTCGCGACCTTATTGATGGTATAGGGTGTTTTTATTGAAAATATTAGGTTTTTATGGAGTTAGGATGAAATATGGAAATGTTAAATAGACTATCCGCTATTCTAAGTTTACCGTTAACCCTGCTGTGCGTGTCGTTCTCATCACTGAAGATTATGGGAGCAAACAACTCACTGATGGATGTTTTCCTGTCGGTGATTGTTCTGCTGGGCTTTCTTAATTTATTTCGGCTGATGGGGCGGTGTATCGTTTGGTTTAACGGAAACGATAAACGGTCAGATTAAATAAAGCGCGCCTTTGACCATTCCGGCAAGCCGCATAACCAACGGGAACCCTGGGGTTCCCGTCGTCGATTAACCATCATGCCGCAAAAGCGTCAGCGCCCGCTCACGGCGGCCGGGCTGTCCGCCGTGGCCAGCGTATCCTCCAATACTTCAAACAGGCGGTCGATCTCCTCGCGGGTGTTGTAAT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 235537-237015 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYQC010000002.1 Serratia rubidaea strain CFSAN059619 contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 235537 32 100.0 33 ................................ CCTACAGTCCCAGCACACTGGGGCAGCGTTCAG 235602 32 100.0 34 ................................ ACGTCAGGTAAGCAGTCCATCTCTGACTCCTTGC 235668 32 100.0 34 ................................ CATGATGTCGTCTAATGCTCGCTGCTTTCCCACG 235734 32 100.0 33 ................................ TCTATGGAGACACTCGCAGAGATCGGCATGAAA 235799 32 100.0 37 ................................ ATTACCCTCGAGGTCGATCAGGCCATCCCATCCAATG 235868 32 100.0 34 ................................ TCAGCAACCACCGCGGCGAGGCGCTCGGCCATTT 235934 32 100.0 34 ................................ ATGGTTAACCTCACTTAAATCCCGGAGGAATCTC 236000 32 100.0 34 ................................ TCTGGAAAAGTTGGACATTGGTTTATGCTCCGGT 236066 32 100.0 33 ................................ CGTGCGAGCAGCCAGGCGCGTCAGGCGACCGAA 236131 32 100.0 33 ................................ GTCGAAGGGCTGCCGCCGGAAAACCCTGCTGAA 236196 32 100.0 34 ................................ CTGACTACCGCCATGCCATCCAGCAAAGCTGCAG 236262 32 100.0 34 ................................ TGCGCACTGGCGCTGGGACGCGAAAGCCGATCAG 236328 32 100.0 34 ................................ ACTGACCCAGGTCGTTATGCCGGCATCATTACCA 236394 32 100.0 33 ................................ TGTCCTACGGAGAATCGTTGAGTCAGCTACGTT 236459 32 100.0 34 ................................ CGCACCTTCGGGCCGAAAATTCTCGACAAGCCGG 236525 32 100.0 33 ................................ TCGCCTATGATCCGCGCGTTGGTGCCGTCCGGC 236590 32 100.0 34 ................................ ACCATTACGGCCTGCGCGACCGTGTCGCCCGCGG 236656 32 100.0 34 ................................ AAGCGTTCTGCGCCGCACTGGTGACAGGTTGTTT 236722 32 96.9 34 .............C.................. AGGCTGATAACGTCGCCAGCCTCACGAAATTCAG 236788 32 96.9 33 .............C.................. CCATTTGTTGGTGGGGCGTCAAGGCGTAGGCGC 236853 32 93.8 33 ...........T.C.................. ATTTGTAAAATCAGCAAACAATATGCTCGTTCC 236918 32 93.8 34 A.................T............. ATCATGAAATGTGTCCGAAAGTGTGCCTGAGAAC 236984 32 96.9 0 ...............................T | ========== ====== ====== ====== ================================ ===================================== ================== 23 32 99.1 34 GTCGTGCCTCACGTAGGCACGTGGATTGAAAC # Left flank : CATATCGTTGAAAGGTTCTCGGAATGATGGTTTTGGTGACCTATGATGTTTCTCTGGCTGATGCTGATGGCCCGCGTCGACTCCGGCAGCTAGCTAAAATGTGCTTAGATTATGGCGTGAGGGTGCAATATTCAGTTTTTGAATGCGAAATTGATTCTGTCCAGTGGGTGAATTTTCGAGCCAAACTCCTCAGTATTTATAATGCAGAGGTTGATAGTTTACGTTTCTATCGGCTAGGGAAGGAATGGAGAAACAAAGTTGAACATCATGGCGCCAAGCCCGCAGTTGATATCTTCAAAGACCATTTGATCATCTGAATTTTCTTCCGCCAACCTGTAGTCCTCACCAAAAGGCTGGCAGGTTGGCGCGAAACTATTACTATGAAATAAAAGAGAAATTTTTCTAGTCCGTTGATTAGCGGTGTGTCTGTGCCTGGTTAACTGCGGGTTGGCGCAAAATGCTTGCTAAAGGTAGACTACACAAGTCCTTGCAATAAGGGG # Right flank : TAATCGGGATGAGGGCTTGCAGACGGTTGGCCCTGCCGTATTCCATGTAGATATGTGGGTTGAAATTGTGCTGCTTTGAGTAAATCTCATTAATCTTTATGGATTTCAAAACCCCAGGCTTTAAACGGCCTGGGGTTTTTTCGTTGCGCCGCGGACGGCCTGGAAGCGAAGCGGCCCCGATAGGGCCGCTTGTGCAGGTTCAGCGCGGGAACACCACCGTGCGGTTCTCATAGAGAAATACCCGCCGTTCCACGTGCCAGCTGACGGCGCGCGCCAGGGTTACGCGTTCGATATCTCGTCCTTTTTCAATCAGATCCTCCGGGTAGTCGGTATGGGTTACCGGCTCCACGCTCTGGGCGATGATCGGCCCTTCGTCCAGCTCCTCGTTGATATAGTGCGCGGTGGCGCCCACCAGTTTGACCCCTTTGGCCCAGGCCTGATGGTAGGGCTTGGCGCCCTTAAAGCCCGGCAGCAGCGAATGGTGAATATTGATCGCCTTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTGCCTCACGTAGGCACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 700371-700518 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYQC010000002.1 Serratia rubidaea strain CFSAN059619 contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 700371 28 100.0 32 ............................ GCTAAGTTGACCGGCCAGGTCGAGGCCGGTGC 700431 28 100.0 32 ............................ GTCGAGTTGTACGGAATATATACTTGACGACA 700491 28 78.6 0 ...........C..........CC.TCC | ========== ====== ====== ====== ============================ ================================ ================== 3 28 92.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATTGAATTTTACCTGCTCTCTGTTGGTTACTGTCCCCAGGGTTGCTCGCTGACATACTGCAGGAAGCTCATCATACCCAGGCAAACCAGTACGCCAACCATTACTATTATCGCTAATCTCATAATGTTACCTTCCAGTCGTTTGGTTATCTGTTTCGTTATTCGCACGCCGGCAGGCGTGTGAGTAAAGCAACTTATCTGCCTTACGAATTATTGGCGACCCAGTATAACCAGAACTGGCCAAGGTTGGGAGTCAGGCGGCTAAAGGGTGGGAGCGAGGGCGTAACAGCGGGGCAGATATTTACTATCGGCATAATGGTATCGGGCTAACCAGGTCGTCGGCTGGTTGCTTTATGGCCCCGGCTATGCAGACCCTTTTTTTTACGCTGTTTCTAACCTATTGATATATATTGGTTGAATTGAATGCGAGAAAAAGAGCCTTTTCGGGCGTAATCGGCAGGAGTGCTTTTAAAAACAATAGGCTAGTGCTAATCTGCAACA # Right flank : CCCTTGCTGTGATTCTTATTCCTCAACACGATGACAAACCATTTCGATATTGTGGCCGTCCGGTGCAATCACAAAGGCGGCGTAGTAACTGGCGTGATAATTGGGACGCAGGCCCGGTGCGCCGTTATCTTTACCGCCGGCCGCCAGCGCCGCCTGGTAAAAATCATCCACCTGCCGGCGGCTGTCGGCGATGAACGCCAGATGCAGCTGCGCCGGCTGCGCCGTGGTCTGGTATAGGCACAGTGAGGTATTGTCGGGGGCGGCGATCTCTATCCCATAGTCCGGCGCGCCTTCATCCGCCACGCTCACGCCCAGCGGCGCTAGTGCCTTAAGAAAGAAATTTTTGCTGGCCTCATAGTCGCTAACGCCAAATTTTACATGGTCAAACATAGCTTCCCCTTACCAGTGATGAGCCGTGCGCTCACCCCAGTATAGCCGTGCGGGCCGGGTATACTGCCGCGCTGCGGTTTTTTCTTCTTCCTCGTTTTGACGGGGAGCGG # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //