Array 1 14849-13094 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGCJ010000032.1 Lactobacillus sp. CC-MHH1034 contig32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 14848 30 100.0 35 .............................. GTCGACTACCTCCTCGTGCTTCAAAAAGCTATACG 14783 30 100.0 37 .............................. AGCCAGTTACACGTGTTTTATCCTGGACATCATCGGC 14716 30 100.0 35 .............................. AGCTGTTTCCAGAAACATACGGGAATTCAATCAAA 14651 30 100.0 36 .............................. CCCGTTAATGGATTTTTGAAAAAGGTTGAAAATCCA 14585 30 100.0 35 .............................. CACAAAAGGACATTGCTGCACTTAAAAAGAATGAC 14520 30 100.0 36 .............................. ATTCTAAATGGACACAAGGAGATGTAAGCTCTTATG 14454 30 100.0 36 .............................. ACAAAAGGCTCAAATGTATTGGGACATCTTATAGGG 14388 30 100.0 38 .............................. ATTGCTAGTGCTTCAGCTGTACCAAGAGGTTTGGTCTC 14320 30 100.0 35 .............................. AATCATCTAATAACATCGAATTGTAAGCCCCGTCG 14255 30 100.0 38 .............................. TCAAATCGCCGTATAGGTCATTTAATTCGTCGTAAAAT 14187 30 100.0 36 .............................. TACTACCGTCGGAGATCAATTCATTTTCGGCCGTAT 14121 30 100.0 40 .............................. CAACCAAAGAAGTGAAATCGCTATTAGATGCTACGAAATC 14051 30 100.0 38 .............................. TGAACTTCGTGAGCATTGTTGTTAGCCGCATAGTTCTC 13983 30 100.0 39 .............................. CCTAATAGTTATTGCGGTTGTAGACTGCAACATTGAAAC 13914 30 100.0 35 .............................. TCTTTTCACGCTTTAATTTGTCAACAACGTTATAC 13849 30 100.0 36 .............................. TAAACCAGTTGCCACCGCGAAGAAATATCATTCTTG 13783 30 100.0 36 .............................. TGTTCAACTTTATTTATCTTGTTTCCAGTAGCTTTA 13717 30 100.0 36 .............................. TGTGAGCTTGAACACCTCTGATGTTGGGTCATATTA 13651 30 96.7 35 .............................C TTTGCAATCTTCTACTCGTTTTCCTTGTTGCAATG 13586 30 100.0 35 .............................. TACTCAGCTTGCCCTTGCCCTTTATCCGTTTAGAC 13521 30 100.0 36 .............................. TTTTTATAGATTGTCAGTTCAAGCTTTCCTAAATCA 13455 30 100.0 37 .............................. CGATCCAAGACGCCGCTTTGCGACAAAGAATCATTGA 13388 30 100.0 34 .............................. TCGATGACCGGCACTGTGATACCCACCATCTTGT 13324 30 100.0 37 .............................. ATTTTTGCCCTTTTTGAGTTTAAAACTGAACGTTTTG 13257 30 100.0 37 .............................. CCAGATACCGCTGCTAGATTTAGAACCCCAGGCATAG 13190 30 90.0 37 ..............A.GA............ GACGATGATCTTGATCAAGAAACACTTGAATGAGCTC 13123 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 27 30 99.5 36 GTTTTTATCTAATAGAACTGGAATGTAAAT # Left flank : AAAAGCTTATGAACCCTTTGTAATATGGTGGTGATCCGACATGTATGTAATTTTAGTCTACGATCTTTCCCAAGAACGCAATGGTGCTAAAACACAGCGATGGGTATTTAAGATCTGTAAAAAGTATTTAACACATGTCCAGTTTTCCGTTTTTGAAGGTGAATTATCTCAGTCCCAGCTTGAAGCATTGAAAGCTGAGTTAAGACCCTTTGTAAGGGATGATTTGGATTCAATCATTATTTTTAAGAATCAAAATAAGAACTGGCTTAAGAAAGAATATATTGGTCAGGATCGGGAAGATTTAACATCTAATATCTTTTAAAACTGTCGATGGTCAGCTCTGTATTTTTGATGGGGTATCGACAGACAGTAAAACAGGCGTAATATCAACATTACGGCCGGACTTAACAGATTATTTTAGAAAAGAAAATGTAATTTTGGGCATATCGACAGAATAGTGCATGAAAATATGCTATTCTATTGATGTAGCTTTGTCTGGG # Right flank : TACAAGCAACAACATGCTTACCCTCATCACCCAAAAAGAACGCAACTGAAAAAATATCAGTTATGTTCTTTTTTTAACTCGTCAACTCTATTTAGTTGAAATAGTCATATTATGGGTCATCGTTGAAACATATTTACCCGGCTTTAATTGATTTGGCGTGGTCAAGGTAATGTTGTTGGTATTGCTAGTATCCGCATTACCCGGCTGGTAGTTTAGGACTAAATTGGTGGGTACATGAGTGTCTGTCTTAAAAGTAGAATTTTTACTGTACACCACTTGTGCGCTATCTTCAGAGAAGATGGGTTCACTCGTGTGATTTTTCTGAATCAATCCCAGAGTACCACCTGTATAATATTGGCTTAAATTATAAAAATTATTATTTTCGGCATTAAACAAACTTGGTAAGCCTAATTGTAATTTAAAAGTATCGGTTGGAATTGAGTTATCAGTGGGACCATTTGTTCTTTGAATCTAGGCCTTTTCCCTACAGACAGCATAAT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAATAGAACTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 10778-12987 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGCJ010000035.1 Lactobacillus sp. CC-MHH1034 contig35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 10778 30 100.0 36 .............................. TATATTTAAACTGATCGACGGTATGATCATGTTGTT 10844 30 100.0 38 .............................. CGCACTTGATGTGTGGCAAAGGAGTGGAATTATTTAAA 10912 30 100.0 37 .............................. TCAATCATTGCTAATGAACTTTGTTGATCGCCTTGGC 10979 30 100.0 36 .............................. AGTAAAGTTCAAAAAATCGATAACCGATACTTAATC 11045 30 100.0 37 .............................. CTGGTTAGGGGCATTGTGGAAGGTCTTACCGAAGCAG 11112 30 100.0 37 .............................. GAAATTTGATGCCGGCGTGGGCGGCACAGTGCAAACA 11179 30 100.0 36 .............................. TAAGTTACACCGTCACCGCCACCGTAGAGCTGCTGG 11245 30 100.0 37 .............................. CTTTTTGAAGGACGCGTAATAAGAAATGAAGAGGTTA 11312 30 100.0 36 .............................. ATCTATTTCAGGGCCTTTGTTGTTATTTGGACTATT 11378 30 100.0 37 .............................. ATCGCTATTAGTTTGTAATTCTTTTATAGCAGTTATT 11445 30 100.0 35 .............................. GATTTGTTTAGTGAAACGGCTTTTAATTTAATCAA 11510 30 100.0 35 .............................. CACCAATGATCTGTAATAAAATATTGGCCTTTTCT 11575 30 100.0 38 .............................. TATTATCAGTTGAATCTTTTGTATCTAACCCATGCCAA 11643 30 100.0 36 .............................. GACGAAGTAATGTTTGCCTTGAATGATAGCCTAGAA 11709 30 100.0 37 .............................. GTATCTGAGTTATTTTTGCCATTCGGTGTGAAGTTAA 11776 30 100.0 36 .............................. AAAGCTGACAACTCAAGTAAGTCTCAAGACTATCAA 11842 30 100.0 36 .............................. TAGTTTTGCGGTGATTATCAATAATATCACGCATGT 11908 30 96.7 35 ..............A............... GGATCTGGGAAAGTCATTCTACTAAAGTTAACCTT 11973 30 100.0 34 .............................. CAAGAAGAGCAGTATCTCAAGCAACAAGTTTATA 12037 30 100.0 36 .............................. AAAGATAAGCCCCATAGCTGAGAGGCTTATTTTTTA 12103 30 100.0 36 .............................. AAAAATGCGACTAGAGGCATGGTCATGCGAAGTAGG 12169 30 100.0 34 .............................. CTTAGAAACATTAGTACCAACAGGTAAGGCAAAG 12233 30 100.0 37 .............................. AGCATTTGAACTTGCAGCAGATCAAGATGGTAACCTA 12300 30 100.0 36 .............................. CCATCTTCGTTACGCCAGCCAATAAGTTGACACATG 12366 30 100.0 36 .............................. CTTTTCAATCACACGAGAACCGCTTGGCGTGGAAAC 12432 30 100.0 35 .............................. ATCCAGATAGCTGTTAATCGCGTAATCGCGCATAA 12497 30 100.0 37 .............................. ATTCGACGAATCCATCGAACAGCAAACTATGCACATA 12564 30 100.0 35 .............................. ATCAAGATGGGAATCGCTTGGCTAGTTTTCAATTA 12629 30 100.0 37 .............................. AAAATAACACGGGATGATGAGATGGACATTAGTTTTC 12696 30 100.0 35 .............................. TCATTTACTGTAGCAATTTGATCATTTGGTACGCC 12761 30 100.0 36 .............................. AGTATCATAACCGGCATGTATTCATGGATAATTGGA 12827 30 100.0 36 .............................. CTGATTGTTCCAGTAAAGGTTTGAATAACCTTGACG 12893 30 100.0 35 .............................. CCACAAGTCATAATTATATCGTTGTCATTAATATT 12958 30 76.7 0 AA............TT..CA....A..... | ========== ====== ====== ====== ============================== ====================================== ================== 34 30 99.2 36 GTTTTTATCTAATAGAACTGGAATGTAAAT # Left flank : ATAAAGCTGGAAATACACTCGATAAAGTTAATGAAAAATTAAATAATAAGAACGACAAATAAAATCTTGCTATTAATTAAGCCTTGCAGCACAAATCTAAATTTTGTGTTGTAAGGCTTTTTTAGCTGAATCTGATTTTAAAGTAAGTATCTTAAAATTGATTGTCGTTTGAAATATATACATTATAAAAACAGTTGTACCAGCAGTGATGAGGGCTGAACATATCTTAGACAATTTCCTAAATCTGTCTTATTTGTGATATTAAAAATCTAACTTAACCGAAGAAATGTAAGTTCATCAAATTTAAATGTTTTATATTTATTTCTGTCGATCGTTAGCTCTGCATTTTTTATGGGGCATCGACAGATCGAATTCATCCCATAATATCAACTGTTCCATTAAGCTAAAAGAAATATTGTATAAAAATAAAATGTACTTTTTGTACATCGACAGATCAGGTCATGAAAATATGTTATTCTATTGATGTAGTTGTGCCTTGG # Right flank : TTAATCATCGCGCAATACCTTGCCAACCAGATAATTGCGGCTTTATCTAGCAGAATTAGGACATAAATAACCAACCACCGCCACACAATCTTACTGCGTTATTCTTAGTCATTAGATTACTTCCTTAAATTATATTTTTAATCATCCTACCCTTATTTGTTTGAGGACAACACAACCAGTGTTATTCAATTAGTAATAAGTCTTTAATAAAGAATTATAAATCTCTGTACTTCGATAAATCCAATTATCTATACTTATTTGGTTCTTTTGCAATGAATGGTTGTCAAAATATTTGTAGGAATTTTGAGAAGCTAAATTCTGAATGGTCTAACATTTTTGTTACAGCTAATTAACAGACGGTCAGCCTTTGGGAAGAATTAGTAATTTACACATGACCAAATATCAGATAGATTCTGATTTTGGAATTCTGTTGTCTTTAAAGTCATGGCTGGTACTTTTAATGTCTTTGATCTTACGGTCGATTCCTCTGCCCAGGTCAG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAATAGAACTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //