Array 1 1325890-1326318 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030265.1 Skermanella pratensis strain W17 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1325890 31 96.9 35 ..............-................. GATATGGCCGCGAGCCAGTCGAACGCCCTGTACAG 1325956 32 100.0 35 ................................ GATTCCGGCAGGACCTTCTGGTACCAGCCTTGCCC 1326023 32 100.0 35 ................................ TTCGGCGTCGATCGCGGCAAGTTCTTCGATGAGGC 1326090 32 100.0 34 ................................ TCGCCCTTGGCGTGGCGATTACTGGTGCCGCCGC 1326156 32 96.9 34 ...............C................ GACGACACGACCTATTGGGTTCCGGATGCCGGCG 1326222 32 100.0 33 ................................ CACGGTTGGCGGTGCGCGGGCTGGTGCCGCCGC 1326287 32 96.9 0 ...............................T | ========== ====== ====== ====== ================================ =================================== ================== 7 32 98.7 34 GTCGCCTCCCGTGCGGGGGCGTGGATTGAAAC # Left flank : TGGTCCCGACCGCCTCGATCACCTCGGAAACCTCGCCCCTGCGGGCCTCGGCGACTTCGACCGGCACGGCACGGGGACCCTCGGCCTGCTGGGCGGCGCCGCTTCCCGGCGTGTCCAGGTACCACCAGGCACCTGCGGAAATGGCGATCAGGACCAGGACGATGACGATCTGGCGGACCATGGTCATCGAGCGGCTCTTTGCATGTATGGTTCCCCGGCGGTGGATCGACCTCCTATAAGCTTGCGGCGGAACGGCTCAGGACAAGGGTGAATCTGACCGGGCACCCTTCCGCGTGCCTGCGCGAACCCTTCCGCGTGCCCGCGCGAACCCCAAGCGGTCGTATTTTCCCCGGGAGGTTCGTGCGGGCGATTCCTCTTGCATAATCAACGCATCCGGGCAGGATGGCATGGTTGGGCGCCTGTCTGCGGCGTCCGCGTTGGGGAGGTTCGCGCAAGAGCCTGTCTGCGCGGTTATTTTACAAGTAGATAGCAGAGACTAG # Right flank : TGCTCGCTTACCGATGAGCAGCGGGACCTAGGCGCGGTCGCGCTTCGCGCGGTCGCGCTTCGCGCGGGGAGTTTCGGCACCGCTGGTTGCTGGGCGGAAAATGCGGATTGTCGCCAAGGCTGCCGCTCCAGGGGGCCGGCGTCTCAATCCGACAGGCCGATCGTGAACGCCACGGCGGATGCGATCCGGGCCAGATCTTCGTCCGAGACCCGGCCAATCACCGACCCGATGCGGCGGCGATGCACGGTCAGGGGCTTGTCCGCCATGACCTGGGAAATCTCAAGCAGCCCGTTCTCGGTGCTCGGGCTGAGCGTTATGCGCAGGTCGCTGGCCACCAGTTCTTTCGTGCACTGGACGATCACCACTGATGGATGGTCCTGCGGAATAGCGTCTGTCTGGAGGATCACAGCAGGGCGCGGTTTGCCGTAGTCGCCGGTCGTCGCAACCGTCACGACATCACCGCGCCGCATCGGCGTCTTCGTTGTCCAGGATGTTCACCG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTCCCGTGCGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCTCCCGCGCGGAGGCGTGGATAGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1786361-1782081 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030265.1 Skermanella pratensis strain W17 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 1786360 32 100.0 34 ................................ ATTCACAGCAACAAGTAGGCCGCCCGGGCAACCG 1786294 32 100.0 34 ................................ ATAAATGACAACCTCTCCCCTGCCGCTCAATCCG 1786228 32 100.0 35 ................................ CTGAGCAAGCGGCCCGGAATTGTAGTCGCCAAACT 1786161 32 100.0 35 ................................ AACGCGGATACCGGGCGGGATCTCCAGGCGCAGAC 1786094 32 100.0 33 ................................ TGACGTGGCGTCCAGCCCTGTCACCGTCAGCGA 1786029 31 96.9 36 .........-...................... ATGCGGATCGACCCGTCGCGCACCACCTTGCCGCTG 1785962 32 100.0 35 ................................ AAGAAGGTCTATTTCGACCCGCTGCTTGGCCGGGC 1785895 32 100.0 34 ................................ CTCGGGGACGGATAGTCCGCGCGGCCCGCGAAGA 1785829 32 100.0 34 ................................ CTCTTCCCCGGTGTCGGGACGTTGCTTGGGGCTC 1785763 32 96.9 37 .......T........................ GATAAATTTTTTATAGTTAACGCCGCTACCGTATCGC 1785694 32 100.0 36 ................................ TCCGCTTCGCAACAGAGCGTTCCTGTTTCCGGCCGA 1785626 31 96.9 35 .........-...................... GATATGGCCGCGAGCCAGTCGAACGCCCTGTACAT 1785560 32 100.0 34 ................................ ACGGCGGCGGCTACACCGGCCAGACCCTCCAGTT 1785494 32 100.0 40 ................................ GGTCGGCAGCAGATGGCCGTACATCTCCCGCGCCATGGCC 1785422 31 96.9 34 .........-...................... CCGCCTGCCCGCCCACCGGCATGGTGGCGACGCG 1785357 32 100.0 34 ................................ AGATCCATTAGCGCGGACCATTCAACGGACGGCC 1785291 31 96.9 33 ..................-............. TGCCTGTTGATCAGCCTGCAGGACCCCACCGGC 1785227 32 100.0 35 ................................ TCCGCCAAATGACGGACGGCTACGCGCTCGCCATG 1785160 32 100.0 36 ................................ AACGCGACGCGGAACACGGTGCTCGGCAACAGCGCC 1785092 32 100.0 35 ................................ TTATCCAGCCCGGCCGACATCGTGATCTACGGCGG 1785025 32 100.0 36 ................................ AACCGGAAGAGCATGGAGACCGGCATGTACGGCGAC 1784957 32 100.0 35 ................................ TGAGGAGGTGACGACATGGCGAAGACGCCAGCGTG 1784890 32 100.0 34 ................................ CGCTCGACGTTCGGCAAGGCGCTGTCCGGCGATG 1784824 32 100.0 34 ................................ ACCGTGATGGCCGCGTTGTCGGCCGGCGCCGCCG 1784758 32 100.0 34 ................................ TCGGAGGTGACCGGGCGCGTCCAGTCTTACTATC 1784692 32 100.0 34 ................................ CACAGGTCCGGGCTGTACCACTTCATGGCGACCG 1784626 32 100.0 34 ................................ AAGGCCATGGCGGCGCAAGTCGAGGATGCGCTGA 1784560 32 100.0 33 ................................ GGGGCGTGATGGAGCGGCCGGAACCTTCTAGGT 1784495 32 100.0 33 ................................ AATGCCCAACTTGTCGGCATAGGCTTCAACCCG 1784430 32 100.0 34 ................................ ACCTCGGCACGCGGGACGTTCCGCGACATCGAGG 1784364 32 100.0 33 ................................ AGCCTGGAGGCATCATGACGCCGCTGAAGCCTC 1784299 32 100.0 34 ................................ ATCGGCGTGGAGATCGATCCACTGTACTTCGACA 1784233 32 100.0 34 ................................ GTCGAACGTGGCGGCGTCGCTTATGACGTGGAGG 1784167 32 100.0 34 ................................ CTCTTCGTCCTTGCCCCCACCGTTAGGCGCGTCG 1784101 32 100.0 35 ................................ CGTATTGACCGCGACGCGCTCCGTCCACTTCCGGC 1784034 32 100.0 34 ................................ GCCTGAAGACCGGGGCAGACGTCACCATGACGAC 1783968 32 100.0 34 ................................ ATCGGCATTGAGATCGAGCGCCGGTACTTCGACA 1783902 32 100.0 34 ................................ AGGAACAGGTCGAGCAGCCGTCCGGACAGCTTCG 1783836 32 100.0 34 ................................ GCTGGAGCCAGCGCGGTCCGGCACCCGATGCTGA 1783770 32 100.0 33 ................................ TGCGGACATGCGGAGTTCGACGTATCAGCAGGG 1783705 32 100.0 34 ................................ TAGGGGATATATTTAACGACCCCGAATTTGTAAA 1783639 32 100.0 34 ................................ GCCCTGGTCCGGCGTCGAATACCTCCCCTGCCGA 1783573 32 100.0 33 ................................ GATGATGCTGCGACGAGGGCGCTGCGATGACGG 1783508 32 100.0 34 ................................ TGCCAGTTCGGTCTGTGTGAGACCGGCCCGGCGT 1783442 32 100.0 33 ................................ AACGATGATGCCTATGTCGAGGCTGCTGGCGGC 1783377 31 96.9 35 .........-...................... GCTCCAGGGCGCCAGGACGCCTTGAGCTTCGCCGC 1783311 32 100.0 34 ................................ TCCAATGGAGGCTTCGACTTCCCGGCGATCGTAG 1783245 32 100.0 36 ................................ AGCACGGGGAGGCCCGGTAATGCAGTGGCTGCGACT 1783177 32 100.0 35 ................................ ATTCACGAGCGGCTGGAGGCGCAGCGGGCCGAGAC 1783110 32 100.0 35 ................................ GGCCTACCCGTCCGCTTTCAGCACGGGGAGGCCCG 1783043 32 100.0 35 ................................ CCTGATTACGAGCGGGTGATTCCCGGTGCTGACCA 1782976 32 100.0 35 ................................ GGCACGGAATCCGAACTCCAGTCGGTGCAGATGGA 1782909 32 100.0 34 ................................ CGCTCTGCCGGCCGGCGGCGTTTCGGTGGACGCT 1782843 32 100.0 34 ................................ AGCGAGGGCGAAGAAGGCTTCCCGAGCGCGGGCC 1782777 32 100.0 33 ................................ CGCACCAGCAGCAGGAATGCGTTATCTGGGGTC 1782712 32 100.0 36 ................................ GCGTCGTATGCTCGTCTCCGGAGGTTGACCGTGCCG 1782644 32 100.0 33 ................................ GAGGATGGGCGGCCGGTCAACGTCATCGGCCGG 1782579 32 100.0 34 ................................ CTGGCGGACCTGTCGGCGCAGCACACCGTCTATG 1782513 32 100.0 35 ................................ ACCGTGGACGAGCTACAGCCGGACAAGCCGGCCGG CC [1782502] 1782444 32 100.0 34 ................................ AGGAAGATGCCGGCTTCCTGCGGGGCGCGGGCAC 1782378 32 100.0 35 ................................ GCCTTCTCGAACGCGGTGCGGGCCTTGTCCTGGAC 1782311 32 100.0 34 ................................ CAAGCGGCATAGGCGAGGCTGCCGTGATCTCCGG 1782245 32 100.0 34 ................................ CTCCCTGTAAACTCCCCCCGGCGCCCAGCGGCTG 1782179 32 100.0 35 ................................ TTCGACCAGTTCGGCGTGCTCGATCCCATCGCCAT 1782112 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================== ================== 65 32 99.7 34 GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC # Left flank : CCTGTGGAAGTGATCCCCCATGCTGATGCTGATCACGTATGATGTGAATACCGAAGACAAGGCGGGCCGCCGCAGGCTGCGCCGAGTCGCCCGCGCCTGCCTGGATTTCGGCCAGCGCGTCCAGTTCTCGGTGTTCGAATGCGAGGTCGATCCGGCCCAATGGACCGCCCTCCGCGCCCGCCTGTTGGGCGAGATCGACCCGGCGACCGACAGCCTGCGCTTCTACAGCCTGGGCGCCGGCGGCAAGCGCCGGGTGGAGCATGTCGGCGCCAAGCCCGCCCTGGACCTGGACGGAACCCTGATCTTCTGACCCGCCCCCGCCCGCGCGAACCCCAAGCGGTTACGTTTTCCCCGGAAGGTTCGCGCAGACGATTTCCCTTGCGAAATCAACGCATCCGGGCAGGATGTCACGGCTTGGTGCCGGATTCTCGAAGCCGCATCGGGAGGTTCGCGCAGCACCGGGTCTGCGCCGTTATTTTACAAGTACATAGCAAGACCCG # Right flank : GCCATTTCGAACAGGTTCTGCGTCGCCGGGTCCTCGTCGCCCCCCGTGTAAGAAAAAGGGTCAGAGTGAATTTATCTCAGCGTTCGATGTCTTCCCAATCTACTCCCGACAAAAAGGATTGCAATCCTTGAGAGTTTAAGACAATTTACCTATTTTAATCGCCAGCCCACCCGGAGCGCGCCCCCATGTCCGATACCGCCACAGACCTGGACCTGGACCTGGACCTGCCCCACCGGCAGGAAGCCTTCGCCCGCCACGTCGCCTCCGGCCGGAGCCTGACGGCGGCTGCCCGGCTTTCCGGCTATGCCTGGGACGGTGCCCGCCAGGCCGGGTCGCGGCTGATGCGGGATGCCCGCGTCGCGGCGCGCGTGGCGGAGCTGATCGCCGCCGAGGAATCCCGCCGGCGCGAGGAAACGGACGAACTTGTCGGCATGCTCAAGCGGGTGATGCTGGACGCCCTGGAGAAGCGGAACCACTTCGCCGTGCTGCGGGCCGTCGAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGGGCGTGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.20,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //