Array 1 767416-763080 **** Predicted by CRISPRDetect 2.4 *** >NZ_POXP01000001.1 Neisseria subflava strain C2012011976 C2012011976_S31_ctg_494, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 767415 33 97.0 35 T................................ AGAAAATGAAATAAAACGGTAATTATATGATACGA 767347 33 97.0 33 A................................ GTATTATAACTTAGCTTTTATAATAAGTCAAGT 767281 33 97.0 35 A................................ AAACACATCGGCTACCGTGATTTGTGCAATGTCGC 767213 33 100.0 32 ................................. GTTATCGATGTTAATGAAAAACAAGAGACAAA 767148 33 97.0 33 A................................ AGAAAATGAAATAAAACGGTAATTATATGATAC 767082 33 97.0 33 G................................ AGCCATTGTCTTGCTCCTTTCTTACAGACGATT 767016 33 100.0 33 ................................. AATGTACAGGTGGGCGCATGATTAAGATTGATG 766950 33 100.0 34 ................................. AACCATAAACCGTTAGGCATACGGATACCGGCCA 766883 33 100.0 32 ................................. AACGCTATCCAAACTGTGATGGAATACGAACG 766818 33 97.0 32 A................................ TCCTGTCATTGGGTTGAAAATATGTTTGCGGT 766753 33 100.0 33 ................................. GACAAACTTGTCGTTACTGCGCAGAAGCGCAGA 766687 33 100.0 33 ................................. TGCATATTTGCCGACCCTGCGCTGCCCCCGCTC 766621 33 97.0 34 A................................ GACTGGGAAGAAGCGCAAGAGGCGTTTGTTGGTA 766554 33 97.0 32 G................................ CAAAAATACGCGCTCGTCAATACCGGTATCAA 766489 33 100.0 33 ................................. CTGCTGTGTGTCTGCGGACGGTTCGTCGGTGTC 766423 33 97.0 35 G................................ TGCAATCCTATCGACTACTACGCCCTTGAGTTATG 766355 33 100.0 33 ................................. AGCCGTGAGATGACGAAAGAGGAAGAGTGGGAG 766289 33 100.0 33 ................................. ATCACGGGCTTTTGGCGTATGTGCGACCAAGCA 766223 33 100.0 33 ................................. TTCGCGCCGTTTCCGCGTGCCACTTTGCACGCG 766157 33 97.0 33 G................................ CGTATAGACGAGCAAGACGTGCCGTATGAGGGA 766091 33 100.0 34 ................................. GGCGGTTATTTTGCGTTGCATATCCCCCCTCTTA 766024 33 97.0 32 T................................ CGTAACCGATAGTCTGCTTATCCAAGCCAGTG 765959 33 100.0 34 ................................. ATCTCTCGAGATGGTCAAAATGAATCACTAGGCA 765892 33 97.0 32 A................................ AGAAAATGAAATAAAACGGTAGTTATACGGTA 765827 33 100.0 32 ................................. ATGTATGCAAATATGCACAATACAAATATGCT 765762 33 97.0 33 T................................ TCCCTTTTGGCCATAACCAGTTAACAATTTATA 765696 33 97.0 34 G................................ CCCCTGCTTATCAGTGAAAAGGGACTTAAGCTAT 765629 33 97.0 33 T................................ TCTTATTATCCTGAAAGGGCAAAACCATGAAGA 765563 33 97.0 34 A................................ AGTAAGTGGACTACCTTATATACATGAAAGGAAA 765496 33 97.0 32 G................................ CACTTCAAGCATGACAATGGCGCATTCCGTGA 765431 33 97.0 33 A................................ GATTACCACCGCCATGCCTAATGCGTTGACTGC 765365 33 97.0 33 G................................ TGTACCACGAAATCCTTAAAGTAGTTGAGCTTG 765299 33 97.0 33 T................................ ACAACCCCTCGCGCAACAGTGGTTAACCTCTCA 765233 33 97.0 32 G................................ AATGGTCGTAACCGTCCGTACTACCACCAACT 765168 33 100.0 32 ................................. TCGTATACTCTACCCGTAGCGTTCGGGGGATG 765103 33 97.0 33 G................................ TCTATATATTCAAGCAATTTAAGCCATTTTGTG 765037 33 97.0 34 T................................ ATCAAATGCGCCCTTTTTTTGATTGGGGATAGTC 764970 33 97.0 34 T................................ AAATTAGAGAAAAAAAAGGTCGTTTGTTTTCAGA 764903 33 100.0 33 ................................. CCGACTTCCAAGTTGTTGCCCAACAGAATTACC 764837 33 97.0 33 G................................ CGCCATTCTTACCGCCCCCTTGCATTCCGCCGT 764771 33 100.0 34 ................................. GTCTGAAAAAGTGTTTTCGCTCTACCCACGGTGG 764704 33 100.0 32 ................................. CAACCTTGAATCGCGGCTCGTTGAAAACAAAT 764639 33 100.0 32 ................................. TGCTTGATACTATCGCGGAATATATGGGCAAA 764574 33 97.0 34 T................................ TCACTAAGTTTAAAGGCGAGCGAGGGGAGAAAGG 764507 33 100.0 37 ................................. AGGTCATTAAAAAACTCAATACAACCAAGCGGCAGGC 764437 33 97.0 33 G................................ TTCGGCCATCAGGGTCAGAGCAAAGCTGGCAGG 764371 33 100.0 33 ................................. AAAAACGACAATCGGCAGAAGTGATTTTGTCGA 764305 33 97.0 33 T................................ ACAATCTCGCTTTCTGAAAGCATAACGCCCTCG 764239 33 97.0 33 T................................ CTCTTTGGTTTTGCTCATTTATGCACTTTCCCA 764173 33 97.0 33 A................................ ATTAAAAATCAGTGTGTTAGATACTTTTTGATA 764107 33 97.0 34 A................................ CTCGCCTGCGCCCTATTGATGAACGGCCTGCTCA 764040 33 97.0 33 A................................ TCGTCACGCCTCACTTGCACCATGCGCGGCGGT 763974 33 97.0 33 T................................ ATTTGGTATCTGACGGCTCAAGCGTTTTGGGGA 763908 33 97.0 32 G................................ AGTTTTTTGCCCGAAAATAGAAATTTAAGTGA 763843 33 97.0 34 G................................ TTCTGTGTTTTTGCTGTCGTTTACGCGCACGATG 763776 33 97.0 33 A................................ ATCAATAGGGCGCAGGCGAGGAATAGGGCGATA 763710 33 100.0 35 ................................. TTCGATGTCGCCGCTCAAACCGACTGGGGCCGTCC 763642 33 100.0 33 ................................. GTATCGGACGGCTGCAAATTAATAGCCAACCCA 763576 33 97.0 33 T................................ GTATCGGACGGCTGCAAATTAATAGCCAACCCA 763510 33 97.0 34 T................................ TTCGGTCATTTGTGAGGCTTTCTTATGGGTTGGT 763443 33 100.0 34 ................................. CGTATCAGATTTATTGAACACGCCGTCGGCGTAA 763376 33 90.9 33 T...........TA................... CATGTTTGACCAATCAAAGGATTTTCACGCATC 763310 33 90.9 33 A...........TA................... TGGCGGTGGTGGAAGTTCTGGCGGAGGTGGAAG 763244 33 87.9 33 T...A.......TA................... TGTCTATTCAACCGGAAATAACAGAACAGCCTT 763178 33 93.9 32 ............TA................... AAAATAGATACGAAATACACCGCTGCCATCAC 763113 33 93.9 0 G...........T.................... | T [763110] ========== ====== ====== ====== ================================= ===================================== ================== 66 33 97.6 33 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GCATATGGGAATACAAAATGTTGATGCTGATTACTTACGATATTTCGCTGGAAGACGCCGAAGGACAGGCAAGGCTGCGACGCGTGGCGAAATTGTGTCTGGACTACGGCGTGCGCGTGCAGTATTCGGTGTTCGAATGCGACATCGCGCCCGATCAGTGGGTCGTTTTAAAGGACAAACTTTTGAAAACCTACAACCCCGAAACCGACAGCTTGCGCTTTTACCATCTGGGCAGCAAGTGGCGACGCAAAGTGGAACACCACGGCGCAAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTAAATCGCCAACCTACGGTTCTCATGAAAATGCGGCAGGGTTGGAGAATTGGAATTGTTCTTTAACAATCAGGATAATTGCAAATGCGGGTGTAACAGAAAAGGCTGTGTTATACTCGCGTTCGCGCTTTTCTTGGGAGCTTAGCGAAATCGGGGCTGCAAAACCTGATGGAGCAAGGCTTTTGAGAGAGGC # Right flank : TTCAGCAACTACGAATTCTATGCCGACCTATTCCGTCAGCTGCCTTTTTGTAGCTATATGTTCAAATATTGCCCAAGCAGGCCATTCTTCTTTTGATCCTTCGCTTTCCGAGGCTTTAGTGAAAGCACTGGAGGATATTAGAAGCAAGTTATAAAGGTTAATAAATGACAATGCCGTCTGAAAAAGTTTCAGACGGCATTTTTTCTATTTGCATATTAAATTTAATATCATATTATCATTGAATCTATATCAATTTGAATTTTTTAGAATTTCAATATAAAACCCCCTCATTTACTACGCTCATTCCGCCCAAGATAAACTCGGCAATCCCTTGCCTTACAAACCATTGGCAAACCTTGCAAAGTCATTCGGTAAATGTGGGCGAAATGGCGGCTGAGTTTGCCCGGGTATTTGATGCGCAGGAAATTGCCTGCCAGACGGGACAGCTTCATGATTTAGGGAAATATTCAGTTGCCTTTAATCACCGATTGCATGGCAGC # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //