Array 1 16249-17132 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAHTV010000007.1 Salmonella enterica subsp. salamae serovar 1,13,23:z:1,5 strain HAZEL-203 NODE_7_length_197442_cov_29.633713, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16249 29 100.0 32 ............................. TGGGAGCCGTTAAGTGAAGCGCTGCTGATGTT 16310 29 100.0 32 ............................. TGAGTCGGGCAAAGACGAAGCGGTTGCTCTTG 16371 29 100.0 32 ............................. TCGTAACCAAAAATAATGGCGTGATAATGCGG 16432 29 100.0 33 ............................. ATGTAACTCATCCTCAGTCCACCATTATTCAGA 16494 29 100.0 32 ............................. GTAACGCTACAGACGTGACTTTTATTAATGTC 16555 29 100.0 32 ............................. GTTGTCGATACATTATTAACTGAGGATACAAA 16616 29 100.0 32 ............................. GAATAACCGACTGGATTGTCGAGGCCGCCGAG 16677 29 100.0 32 ............................. AGCCAATTGGTTGCAGAGTTACAGGCGCTATG 16738 29 100.0 32 ............................. TGAATTTATGGCAGTAGAGGAATTCCCTGTCC 16799 29 100.0 32 ............................. CGGCGCTCAACAATGTAACGTCTCTCGGCTCC 16860 29 100.0 32 ............................. GCATTTTTGCTTCGGGTAGATCGGTTGGTTGA 16921 29 100.0 32 ............................. CGAGCCCAGCGAAAGCAGATCGCTGGACGCCT 16982 29 100.0 32 ............................. AGGGGGCTATATGGCATACGGCAGGATTTACG 17043 29 100.0 32 ............................. TACGTATACAGAGAAAATAAAACGTTCCCAAA 17104 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 100.0 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : CCTGCTGTTCCCGTTCTCGCGTCTGGTGCATATCTGGAGCGTGCCGGTTGAGTATCTGACCCGCAAATACCAGATTGTACGTGCGCGTCACTGATTGTGTGCTGATTATCTCAAGTCGCCGTGGGGCTGAGGCGTATTCAGCACTATAGCGGGAAAATAGCGCGGGCATGGAGATTGACTTCATGCCCGTTTTTTTGCATTTCCTATCGGGTTCATCCCGTACCTCACGACCTGCCGCAGACGCTCCCTTGAGCTCTTCGCCGACGATATGTGCAAAATCTTACTCTCCCTTGATGTAATGATGTATTAATCCCCGAATTTTCCGTCATACGACACTCGGCATAGTATGTTGGTAGATTTTAAGAGAGAATCATGGGCGTGGTTTTTTATTATATGAAATCAATTGGTTATATGCTCTTTAATAATGCGGTATTGTTATTTATGTGTTGGTAAGATGTTGCTGTGTGAAAATGTTGTTTATAAACATAGGGATGGCACTA # Right flank : GTATTTCAATATTCATTTATTGCAGGTGTAGGGGTGTTCCCCGCGCGAGCGCTGAGTTTGTGGGGTTAGTTCACTCCGGCAGGTTTTTTATGGCTGTTTGCCGGATGGCGGCGTAAATGCCTTATCCGGCACCGATCTTATCTCGGCGTTGCCTATTTTTATGGTGAAGGCGTGCCTCAGGATTATCGTCAGCTTCTCATCCTTCCCCGTACGGAGAGATATGAGGCAGTGTGCTTAACGGGGATAATATATGCGACGGAAGTGATGGTGGTGGGGGAAGGATTATTCGTCGCTCCGCTCCTCACCCTTCGGGTCGTTGCCTGCAGCAGCGCTTTCTCGCTGCGCTCGAATCGAACCTTAGTCGAAGCTTCTCATCCTTCCCTGTATGGAGAGATATGAGGCAGTGTGCTTAACGGGGATAATATATGCGACGGAAGTGATGGTGGTGGGGGAAGGATTATTCGTCGCTCCGCTCCTCACCCTTCGGGTCGTTGCCTGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 111873-109890 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAHTV010000008.1 Salmonella enterica subsp. salamae serovar 1,13,23:z:1,5 strain HAZEL-203 NODE_8_length_174289_cov_35.552687, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 111872 29 100.0 32 ............................. CTTGTTAAAGACAGAATTAACGCCGTTAATGC 111811 29 100.0 32 ............................. TCTCCAAGATACCAGACGGATGGATTGAAACT 111750 29 100.0 32 ............................. AATTTCCTTGCTTGTAAATTCATTATTACCAT 111689 29 100.0 32 ............................. CATCGAGAGGATGGAAAATTTTCCCTCTTCAT 111628 29 100.0 32 ............................. TAGGGTTAACCAAATTCATTTTGCGTTTAAAT 111567 29 100.0 32 ............................. AATATCGTTAACCCGGTTGAATACGTACAGGC 111506 29 100.0 32 ............................. CTGTCTGAGCGCTACACGTTGAGCTATCTGGC 111445 29 100.0 32 ............................. ATACGCTTCCGTTTGATTCTTCATCTAAAACA 111384 29 100.0 32 ............................. TCATGATTTTATTGGCCTCGCCCCCCATGAGC 111323 29 100.0 32 ............................. CACTCCCCGTTACCAATAAAAAACCCGCACAT 111262 29 100.0 32 ............................. GTGGCGCCACGGCGCAGAGTAAAAAAACACGC 111201 29 100.0 32 ............................. TCATACGGTGTTCTGATTCAGCAATAAAACTA 111140 29 100.0 32 ............................. ACACTCTCGCGTAACCAAAATTCACTAATCCC 111079 29 100.0 32 ............................. AGGAAACGGCGGGCGCTCTCAGCGAGGATGAA 111018 29 100.0 32 ............................. ACGTGGATCTGGTTTCCGGTACGGTTCACGTC 110957 29 100.0 32 ............................. GAGAACAAAAAAACCCAGGTGATTCTGTTGAT 110896 29 100.0 32 ............................. GTACTGGAGAGGTAAATATTCCAGTTACAGAT 110835 29 100.0 32 ............................. CTGCTCGCAGTTATTGGCGTAATAGGCCGGGC 110774 29 100.0 32 ............................. CGGCTGGAGTCTGATTGCTCGCCTGACTTTAA 110713 29 100.0 32 ............................. ACGTATATGAGCCAGACCGGAGCACTGACGCT 110652 29 100.0 32 ............................. CAAAAAACATTCGCAAAAATAGCGGCGTGGCT 110591 29 100.0 32 ............................. ACCGACCCCAAAAACTTCGCTAAGGCCGTTGA 110530 29 96.6 32 ............T................ CTGGACTGATCAGGCTGGAAGTTGGTCAGGTA 110469 29 96.6 32 ............T................ TGGTTAAGTCCGAGCTGGCGTGGCTTGCAGAA 110408 29 96.6 32 ............T................ TCGGCCTCATCTCTCAGTGATTTTTCAACCCC 110347 29 96.6 32 ............T................ CCATCCAGCAAATCCTTCCAGACCCAACCAAA 110286 29 89.7 33 .......G....T....A........... CGCGATAGCGTCCGCTTTGCCTTTGTCGGTCGC 110224 29 96.6 33 ............T................ GCCCACGCCTCGACGCGGCACATAAAATCGTGC 110162 29 100.0 32 ............................. GGCGTCTGGTCGCAACTGGTGCCTGCTAAATT 110101 29 100.0 32 ............................. GGGTCGCGGGTAATACTAATTACGCCGTTGGT 110040 29 100.0 32 ............................. CAGCGCCAATGGCCGGAGCCGAAAGACGGGGA 109979 29 100.0 32 ............................. CTCAACCGCTCCCAAATTGCCGGGATTTTTAA 109918 29 89.7 0 ............T..............GC | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTAGCCGCCGGAGAAATCGAACGCCCTCAACCTGCGCCGGATATGTTGCCGCCAGCAATACCTGAGCCGGAATATCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGGTGGTGGTGACAGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCAGGGGTTTATGTTGGCGATACATCGAAACGCATTCGAGAGATGATCTGGCAACAGATTACACAACTGGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGGGAAAACCGCCGTATTCCGGTAGATTTGGATGGACTTAGATTAGTCTCTTTTCTTCCCCTTTAGAATCAATGAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTAACGTTGGTAGTTTGTTGAGTGGTAAAAAAAGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTTCACCAGCAGATCAGGACGTTTTTTTCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAATGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCTGCGTCGCTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 128777-127955 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAHTV010000008.1 Salmonella enterica subsp. salamae serovar 1,13,23:z:1,5 strain HAZEL-203 NODE_8_length_174289_cov_35.552687, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 128776 29 100.0 32 ............................. CCCCCCGATTAAGGAGGCTTTGATGATTAATC 128715 29 100.0 32 ............................. GCAGTGACATAATTAAAAGATTATTCCCTCGC 128654 29 100.0 32 ............................. GAATACGCCTTCGGGCTTGTGCCGTTTGCGGC 128593 29 100.0 32 ............................. CCGTCTTGCTTTTCGAAAAAAGGCACTAAATC 128532 29 100.0 33 ............................. AATATGAAATGGAACGAACTGGCGAGAGTCAGA 128470 29 100.0 32 ............................. CGCCAGGCGGTGGACATATTCAATTGCGGCGG 128409 29 100.0 32 ............................. AGCGTCCCAGCTGGGAGCTTGGCCCGTCTTCT 128348 29 100.0 32 ............................. CTACAACTTGCTTGTGATCCCTCGTGACCAGC 128287 29 100.0 32 ............................. CGTGCGGCGGGCTGGCTGCAATTTGTCAGATC 128226 29 100.0 32 ............................. GCGATATTGAAGAAAAAAGCGCCCGCATGATG 128165 29 96.6 32 ...........G................. TCCCTTGCCGCGCCCAAAATCCATAATAAACA 128104 29 96.6 32 ...........G................. TTTTTGTCCACAAAAAGTTTTTGCGCCTGGAC 128043 29 96.6 32 ...........G................. CCGATTTCGTGATTCTCTACGTAGTCGGATAA 127982 28 89.7 0 ...........G............G-... | ========== ====== ====== ====== ============================= ================================= ================== 14 29 98.5 32 GTGTTCCCCGCACTAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGTCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGCATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTATCAATCTTACGGACGGCCTGTCGTTGCCGTCTGTGACTCATCTATTACCTTGCATTGTTTATTTTCTCTATACGAATTTCGATGAGTGTTTAAAAGCACTGATAAATTTTCCCATAGCGAGGCATGGATCACGCTATTTTGGTAAATTAAAAGAAAAAATTATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTACGTTGGTAGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATACATTTAGA # Right flank : TTGCATAATCATAATCTGTATACCAGTAATGGCCGGTACAAACCTGTAAAGTAAAAAGGCCGCATTTTCCCGGGGAGGCTTTTATACAGGAGAAAGCCATGGCGTTAACGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTAAGGGCCAGACCAGGATTAAGCCTGTTGGTCCAGGATGAGTCTACGTCGATCTTGTTCGACACCGGCCCTGATGGCAGTTTTATGCAGAACGCGTTGGCGATGGGGATCGACTTGTCCGATGTGCCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCAGATATTGCGCGCGAACGCTATGCGGCAATGACTTTTCTCGGTATTACCCGAAGAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGGTGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //