Array 1 1825811-1826444 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_SAXU01000001.1 Brachyspira aalborgi strain 513A 513A_contig1, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	===============================	=====================================	==================
   1825811	    31	 100.0	    36	...............................	GCTTTTTGGTGGTCGGCTACGCTTCTTTGAATCGCG 	
   1825878	    31	 100.0	    37	...............................	ACATTATAAGCAGTAGAAACAGTGATATTTTGGTCAA	
   1825946	    31	 100.0	    36	...............................	CTTCAATTAATTTGTGTTTATCTAAATCAATATAAG 	
   1826013	    31	 100.0	    36	...............................	ATCAATGATAGATACCAAATGACTTTACGAAAAAAA 	
   1826080	    31	 100.0	    35	...............................	ATATATATAATATGTCAAGTGTATTATATATATCG  	
   1826146	    31	 100.0	    36	...............................	CTGATATATCTTGAAATTTTACGCCCGTTGCTGCAG 	
   1826213	    31	 100.0	    36	...............................	TCTCAAAAGAGTATAATTTTTCATTACTCCCGCTCC 	
   1826280	    31	 100.0	    36	...............................	ATACATTTTTGACTGACGAACCTATACCGCAAATAT 	
   1826347	    31	 100.0	    36	...............................	TAAATCTTTCCAAAATCGTCCTTTATTATTTCCAAG 	
   1826414	    31	 100.0	     0	...............................	|                                    	
==========	======	======	======	===============================	=====================================	==================
        10	    31	 100.0	    36	ATAATAAATCTAACCATATTGGAATGTAAAT	                                     	       

# Left flank :   ATTTGCTCGGAGAAAAAGAATATTCCCCGTTTAAAATATGGTGGTAGAAATGTATATAATTTTAATATATGATATTCAGGTAAACGATGAAGATAATCCTTATGTATTGAAAAAAGTTTTTAATATTTGCAAAAGGTATCTTAATCATATACAAAAATCGGTATTTGAAGGCGAACTTTCAGAACCTAAATACCTTAAATTAAAAGAAGAGCTCTTTGACATATTAAGAGAACATAAAGACTCATGTATAATATTTAAAAGCAGAAACGAAAAGTGGCTTGAAAAAGAGTTTTTAGTGAAAGAAGATATTGACAAAACTTCAAATTTTATATAAAATACAAGTATGTCGATGTTTAATCTATAATAATTTACGGATTATCGACAGACGATTTTTAAAATTAATGTCGTATTTTGTATTGTTATATTATTTTATATCAATACTTGTATCAAATTAATATGTAGAAAATATTAGTTTTGCATATTTCAGAGAGAAAAAACGG
# Right flank :  TGCCCTATTATTCGTCTTTCCAAATTGACAATTCTATTTTAGTTATTAATCGTAGTTTGGTAAAGATAAACAAAAAAATAAAAAATTTCTCATTATTCCCCTTGACTTTTGCCGATTAATTTATTATATTAAGTATAGGTTGGATTTTCGCAAGAGACTCAACGCTATAACGAGTAATTGTTATAGGACTGGCTGCTTAAATCCAATCTTTCATTTTTTGCAATTTTTACAATCATAATTATAAGGACATATCCACTCGCAATTACTATCTAATATCTCATTAGTCATTTTATTACCTCCAATAATTTATTTTTAATATATTTACTTTCAACTTGTCTGTAACTTAAAAATTGAATATTTCTAATAAGCGGTATTTTTATTGAAACGCTTTTGTGAGATAAACTATATTTTGTATTCACGGCTATTTGCAAATATCTATCCTCTCCGACTTTATAGAGATATAAAAGATTTTTATTATTCTTTTGAAAATAAACATCTCC

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     ATAATAAATCTAACCATATTGGAATGTAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:80.65%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-1.10,-0.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.37,0   Confidence: MEDIUM] 

# Array family : NA
//