Array 1 218934-217193 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYWH01000037.1 Salmonella enterica subsp. enterica serovar Worthington strain CVM N32773 N32773_contig_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 218933 29 100.0 32 ............................. CCCCTCGCCCTCGATCTGGCGTTAGTTACTGG 218872 29 100.0 32 ............................. TCACACGTTAGATCAACAGTTGTGTCCGTATT 218811 29 100.0 32 ............................. GGCCTGATGAAAATTGCCGATAGCATGGACAA 218750 29 100.0 32 ............................. TTTACAGGTCATTTTGCTGTCCTCATTTTTGG 218689 29 100.0 32 ............................. TACTGGATATCAACCTGCCTGAGTTAAAGACC 218628 29 100.0 32 ............................. CCTTGTGTGCAATGCAACAAAGGCGAACTGGC 218567 29 100.0 32 ............................. ACACTCAACGCTGTAGATGTAGTCAGTAAACC 218506 29 100.0 32 ............................. GCGTGGAGTAATGGGCGGCTAAAACTGCCGGA 218445 29 100.0 32 ............................. ACCGCAGGTGATATTGACACCGGAGCAGGGGG 218384 29 100.0 32 ............................. CCAGTAGTCAAACCCCAGATTGAGCAGTGAGA 218323 29 100.0 33 ............................. CAGCAAAAGTAAAAACCGCTTCCGCCCAATTGC 218261 29 100.0 32 ............................. GCTACGGTAAACGTGAATGTGCGTATTGACGC 218200 29 100.0 32 ............................. GAATATAGGGCTTCATATTTGCCAGTTGTTTT 218139 29 100.0 33 ............................. ATCGGGCGGGATATGTGCTGGATTCGTATTAGC 218077 29 100.0 32 ............................. GTTGAATAATCCCCGCACATCATCCTGTAAAA 218016 29 100.0 32 ............................. CAGTCTGCGGGGTTTCCTGCGTGTAATGAAGT 217955 29 100.0 32 ............................. GGAAAAAACGCTTGTCGCCAAGTATGTTTTTG 217894 29 100.0 32 ............................. CACAGAGTTAAACGCCGCTGCAGCGCTGTTTA 217833 29 100.0 32 ............................. TTTTTATCACGCTCAGACCTGAAAACAACCGA 217772 29 100.0 32 ............................. TTCCATATTCAGGATCATATCCGCACGATAAC 217711 29 100.0 32 ............................. CCTGACGCCAACGGAAACGTGAAAGTCTCAAC 217650 29 100.0 32 ............................. TGTTCCCCCAAGGTTCAAAAATTCAATATGAG 217589 29 100.0 32 ............................. GATGACCCGTATACGTTCAAAATCAAAATCTA 217528 29 100.0 32 ............................. CAATAGGGAAAATGGCATATGAGGGCGCGCAA 217467 29 100.0 32 ............................. TAAAACGATATTCCCGGATAAAAACGGAAAGC 217406 29 100.0 32 ............................. CCGACATGGGCAGGATTGCTGACGTTAGTCGA 217345 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 217283 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 217222 29 96.6 0 A............................ | A [217195] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGAGAATAAAAGCGCTCTTTCCTTTAATTACTTTGCCTGAAGCCTGGGATGAAGATGAGGGTATCGACCAATTTCAGCAACTTTCCTGGTTTATTTCCGCTGCGGTTGTACTGGCTGACTGGACTGGTTCTGCCAGCCGTTATTTTCCGCGTACTGCGGAAAAAATGCCTGTTGATATCTACTGGCAGCAAGCTCTCGCTAAAGCACAAACTGCCATTACGCTATTTCCCTCAGCGGCGAATGTGTCTGCCTTTACGGGCATAGAAACGCTTTTCCCTTTTATTCAGCATCCCACACCGTTACAACAAAAGGCGCTTGAGCTGGATATCAACGTGGATGGCGCCCAACTCTTTATTCTTGAAGATGTCACTGGAGCCGGAAAAACAAAGGCGGCGCTCATATTAGCTCATCGACTGATGGCGGCAGGTAAAGCGCAGGGACTCTATTTTGGACTGCCGACAATGGCGACAGCCAACGCGATGTTTGAACGTATGGCGAAC # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5515-6521 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYWH01000077.1 Salmonella enterica subsp. enterica serovar Worthington strain CVM N32773 N32773_contig_77, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5515 29 96.6 32 ............................A ATGCCGCCACTTCCATTTCGTTCAAATGCCGC 5576 29 100.0 32 ............................. AGAGCAGCTTGCTCACTACCGGGGCAGAAGGG 5637 29 100.0 32 ............................. TATTTGGACAATCAGGTCGAGGTTCAGTATGA 5698 29 100.0 33 ............................. TCACAAATGCGAGGAGTCAGCCCAATGAGCAAC 5760 29 100.0 33 ............................. ACGGGACCGATATTCTGCTGCCCGGGGGCACGC 5822 29 100.0 32 ............................. GAGTTCAGTCACTTGAATGATGCGCGGGAATA 5883 29 100.0 32 ............................. GTCGTCTGGCATATGTGCGTAGCCACCTCGCA 5944 29 100.0 32 ............................. CGGATGATTCGCGCATGACTTGGGCTACTGCG 6005 29 100.0 32 ............................. GGATATCGAACTCTTACCGCCGACGATATTGC 6066 29 100.0 32 ............................. AGAGATTGATTAAATGAACAGTAACAAACTAA 6127 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 6188 29 96.6 33 ..........A.................. TCTGGTGCTGGCGGTTTACTGGGGAGTATTGGC 6250 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 6311 29 93.1 32 .........C..T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 6372 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 6433 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 6494 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //