Array 1 21066-15165 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQF01000025.1 Methanosarcina mazei strain 1.H.A.0.1 scaffold14_1_size58230-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 21065 37 97.3 33 ..................C.................. TGTTCAATGATCTCTACTTTTGCCGGGAAAGAT 20995 37 97.3 35 ..................C.................. CGGAATTCTCGCTAAATTGAAATCAGGCGAAATAG 20923 37 97.3 35 ..................C.................. TATGTTTCAAAGAGAGCTTTAACAGCGTCACTGTT 20851 37 97.3 36 ..................C.................. GTTATTTTTATATCAAGTTCGTTCATCGTGTTTTCA 20778 37 97.3 35 ..................C.................. CAGTGTGGCCGTTGAATGTGATTGTTTCATTGTCG 20706 37 97.3 33 ..................C.................. GCAGACCCAAAACGTATTGAATTCGTCTTCTGT 20636 37 97.3 35 ..................C.................. CCACCTTGTAGGTAATAATCTTTCTAATTACTACT 20564 37 97.3 35 ..................C.................. TACAGTGCTTCAATAGGTCCGGTCATTTTCTTATG 20492 37 94.6 34 .....A............C.................. TTCAAGCTCCGCGTTAACGGTTCCGCGTCCTACT 20421 37 94.6 36 .....A............C.................. AATGCAACTTATTATGGGGTATGGTGTGCTCCTGTC 20348 37 94.6 35 .....A............C.................. TCTGAGAGTTTCTCCGGCTTCCGGTACTCTTGTAT 20276 37 94.6 35 .....A............C.................. AACGGTGATAGAAACGGGCGAACTGGCATCCTCAA 20204 37 94.6 35 .....A............C.................. TCGGAATCGGCTTCATTGCCCGGATAAGAGTGAGT 20132 37 94.6 34 .....A............C.................. TTTATAATGTACCAGATCCATTCTGGCTGAATTA 20061 37 94.6 37 .....A............C.................. TTTTAGAAGAAAGGGAGCCACCCTTTCGTACAAAAGT 19987 37 94.6 35 .....A............C.................. CTATGTTGGCCTGCCCATCTACGACTTCGAGGCTC 19915 37 94.6 38 .....A............C.................. TATTCAATACCTAGATTAACTGTATGATCCCTGTGACT 19840 37 94.6 37 .....A............C.................. TCAAGACTGTCAAGCGCATTATTAGCCTCTTTGAATG 19766 37 94.6 33 .....A............C.................. AAAACCTTAAAGACTTAGTAGAAAAGTCAAAAA 19696 37 94.6 35 .....A............C.................. AAAAGCTTGCAGACTTCTCTGCTTCAGACTTAGTT 19624 37 94.6 35 .....A............C.................. AAATCTGCAATCGCTCAAGAATTCAAAGATAAGAG 19552 37 94.6 35 .....A............C.................. TTCGTGTTATCGCTTGACCAAGTCCATTAACCGCG 19480 37 94.6 34 .....A............C.................. TAATTCTTGCTTTTGTGATTCCCTTCTTCCTGAC 19409 37 94.6 36 .....A............C.................. ATTCGAGAGTCCGTAAAGCGTGGGAGACAAGGAGGT 19336 37 94.6 36 .....A............C.................. CACACTGCAATAACTCCTAAAATATGGAAAGCTACA 19263 37 94.6 35 .....A............C.................. CATGGTGATAGTCATGGTTAACAAAGTGTTTAAAT 19191 37 94.6 35 .....A............C.................. CTAGCGACAGGATCTGCTGTAAATGCATCATAAGA 19119 37 94.6 34 .....A............C.................. AGATAAATCGCCCATGTCTACAAAAGAAAGAAGA 19048 37 94.6 35 .....A............C.................. TGTCTCTAGCGGCACTCTGCTCACCAGCTCGATTC 18976 37 94.6 32 .....A............C.................. TCGGCACTGTTATATTAAGGAGTCCGAGAGGA 18907 37 94.6 34 .....A............C.................. TTTGTTATCACTGATTTGCGTCTCGGTGTTAATG 18836 37 94.6 35 .....A............C.................. CGGAAAGAGACTTAACGCTTTTCCAGACCTGAAGG 18764 37 94.6 35 .....A............C.................. TCCAGTGGTCAGGTGTTTCGCCGTGTATTTTCTCA 18692 37 100.0 36 ..................................... TAAGAATAACACCTACAGGTAAAATAGTACTTGAAG 18619 37 100.0 36 ..................................... CTGCTGATCTGTCCGGCAATCCGGTAAACATCTTTT 18546 37 100.0 35 ..................................... AGCCTCTGTTTGTTGTACTGAGTAGGAATGCATAT 18474 37 100.0 35 ..................................... TATACTCCCCTGCTCTTTGCTTTCCTCTTCTTTTT 18402 37 100.0 36 ..................................... TTTTTGTATAAATCAGTTTAATAATAATGTTCTTCA 18329 37 100.0 35 ..................................... TAAACTGTCTGGTTAACAATGTCTATATAAGAATT 18257 37 100.0 34 ..................................... TGAAATCATTCTCCCTGAAAATGTCACCGAAATT 18186 37 100.0 37 ..................................... TTCTGTTATCCTGGCTATCTGGTTGAAAAGATTACTT 18112 37 100.0 37 ..................................... CAGGCGGCATACTGGAGGCAGTTGACAGCAAGGATTC 18038 37 100.0 35 ..................................... CAATTATCTTCTTTCCTATTCTCCTTACGTCAACT 17966 37 100.0 34 ..................................... ATATTTTCCTCAATGACTATTGCCAGCGCGGGGA 17895 37 100.0 34 ..................................... TGAGTCTGTCTGCTGCACTCTCGTATTCTGTCCT 17824 37 100.0 37 ..................................... TTGTTTTTGTTTTGCCCTTCAGGGTCCCTGTAATAAT 17750 37 100.0 36 ..................................... ATCAGTGCGATAACATTGCAAAGTTCATCCTTTTCC 17677 37 100.0 36 ..................................... AAAGTCAAATATTCCACTTTTTCAGGATCGGTGTAC 17604 37 100.0 36 ..................................... TTATTTCCAGAATTGAACAGTTAGAAGCTAATGTGG 17531 37 100.0 35 ..................................... ACGACAGAATCAGGACACAAAATAAGCAAGGATTC 17459 37 100.0 34 ..................................... TAAGAGACAAGTTTGGACTTTTAGACGGGGATAG 17388 37 100.0 35 ..................................... CGGGAGCTAAGACGGCAACATGGACGACTCTTTTT 17316 37 100.0 35 ..................................... TAGCTCCGGGTGATGTTTTTGAAGTTAAAATAGGT 17244 37 100.0 35 ..................................... TTTTCAATCGCACACGCAAGACCCTGACTGAACTT 17172 37 100.0 36 ..................................... AATGTTACTATCTGTAAGTAATAGTCGTTGCTCCGT 17099 37 100.0 33 ..................................... TATTAAACGCTCAAGAAACAAGTAATGATATTT 17029 37 100.0 35 ..................................... TTTTAGGTTATTATCACGCTGCTTTAACATTCTCA 16957 37 100.0 36 ..................................... TTGCGATTTGGGATGTAGCTGACGACAGGGTTGATT 16884 37 100.0 35 ..................................... GTTGCCCTCTTGACTCAGAAGGAAGCAAAAGAACA 16812 37 100.0 37 ..................................... TATTAAAAAATAGTATAAATAGTAAGTCGGTTGAAGT 16738 37 100.0 36 ..................................... TTAAAAAATTTCTTCTCCTTTGCAGCGTACCATTTC 16665 37 100.0 37 ..................................... ACCTGTTTCATTTATAAGCCTCTCTGTCTTTTAATTT 16591 37 100.0 37 ..................................... TGAAGGAAAACATCCGTGAGCCTGTACGGATACCCTT 16517 37 100.0 35 ..................................... CCCATTCGTGGCCCACCCCTCCAGGGTTTGAAGCT 16445 37 100.0 38 ..................................... TAAAAAAACTTGATGAGATTATTAACCCCAGCCCAGCA 16370 37 100.0 35 ..................................... TTGTCCTTGGTTTGGATTGTGAAGCCTTGAAGTAA 16298 37 100.0 34 ..................................... ATGAAAATCTAAACGATGAATCTAATACACTTCC 16227 37 100.0 35 ..................................... AAAGAAAGTATGACGGCACAGCAGGTATAATTAAC 16155 37 100.0 38 ..................................... GTTATCTCCTTTTAATTAGCGTTGTTATCATTCGTTTT 16080 37 100.0 37 ..................................... TTTTATATATTAATGGAATAAATGAGTCGAGTGGTAC 16006 37 100.0 34 ..................................... TCGTTATCGATTATACTGACCGTGATAATTTACG 15935 37 100.0 37 ..................................... TCCCTGCATTTCTGATCGTATTTTGTAAAAGAATAGA 15861 37 100.0 38 ..................................... GTACACTTAGCATGTCCTCTAAACTCGCTTTTTCCGTT 15786 37 97.3 39 ..................C.................. CACGGTAACGTTTTTTTATGTCAAAAAAATAATCCGGAT 15710 37 97.3 34 ..................C.................. CTTGGTTACTTTGTGGACCTGGGCGAATCCACAG 15639 37 97.3 38 ..................C.................. AATCTGCTATATTATCCAGTATTACTCCATTAATTACT 15564 37 97.3 34 ..................C.................. TAACTCTGAGCATAAGAAAGAATTTCGTGATCTG 15493 37 97.3 36 ..................C.................. TTACAACGTCTGCAAGCTCTTCTTTCATGTGTTCGT 15420 37 94.6 35 .....C............C.................. TTCTATGAACGAGATTCCTGTTACTCTTTTTGAGA 15348 37 97.3 35 ..................C.................. TTTCGAAGAGCGTTTCTTACTTCTTCTGCTTCTTC 15276 37 75.7 37 TG...A...GT..C....C.......G.........T GCAGACGAAAAACGCAAATAAGAGTACAGACAAATTC T [15260] 15201 37 83.8 0 .....AT.A..................A.....T..T | ========== ====== ====== ====== ===================================== ======================================= ================== 82 37 97.3 35 ATTCGTGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : AGTAAATTCATCGCATAAATCAAAAGCCAGATCAATCAGGTGCCTATAAACATCGTTTTTGGGTTCAGAAGTAATATCTATCAAGTTTCTCCTGTACATCAAGTTCTCTCCGTAAAAATTGATTTGTAAGACCATACCATGCAGATACGATTAAATCATTAATTATTCAAAGGAATCTTTGAATTATGCAGACATACTCTGGCAAAAGACAAATCTGTATAAAATTATTTAGTTATTAAGTACATAGTTCTTTCTCTAATTTATTCATTTTTGTTGATTCTTTGCTATATCAGGAAATGAAAAGGAATATGCACAAAAATACCAATCAAAAACGAAAGTTTAATAAAAAGAAAAGCATATGTCCAAATGTTTATGAATTAATGAAAACCCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCAGAAAAAGGGCTTATTTCAGGCATTTTCTAGCCAAATAAAGGAAATTTTTGCCCT # Right flank : TCTATTTCTTCAAATTTTTCTAAAGAGGTTAACCAGAATGTCTAAGAAAATCGGCAGAAATGATCCGTGTCCATGTGGTTCAGGTAAAAAATATAAACATTGTTGTTTAGGTAAGAAAGCAGCCGATGCGAATCTAACTACTTCAAAATCTAAAACTAGTCCAAAATCTGAAGCTCAAGTCATTAACCGGTTAGCCATTATGAGGTTTGAACAGAAATTGCAGGATAATCCCGAGGAACTGGAAAAAATTGGTAAAGAACTTGAAAAATATTCCGGTGACAGGGATGTGGACTTCAAAGAGTTTATTCAAAGAATGTGGAGTATTGATAAAGTAAAAAAGATGAGCACTTCAGAAATAATTGAAAAGTTGCAATCAATGAATGTTGATTTCGAAATAGAACGTTTTAAAAAACAGGCTCAAAATCATATCTCTGCAATTCAATTAGCAGAAGATCATTATTATACACAGGATTTCCATGCCCCAGGTCTGGATGAAGATT # Questionable array : NO Score: 8.81 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 11305-7372 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQF01000067.1 Methanosarcina mazei strain 1.H.A.0.1 scaffold46_1_size27467-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11304 29 100.0 32 ............................. GAGCAATTAAAACAGCTGAGATGTTAGAGGCT 11243 29 100.0 32 ............................. GAGGAATAAAACAATGACCGAACTCGATATAA 11182 29 100.0 32 ............................. CAAGGCACGCATTTTTAAAGGCTGTCGCAAAT 11121 29 100.0 32 ............................. CCTGTTAACGATCTGCAACGCCTGAAACGACA 11060 29 100.0 32 ............................. ACTGCTGCAACGCTCGCATGTATCCCGGCAAA 10999 29 100.0 32 ............................. CATCACTACTCAGGGAAAGTTGTAAACAACTC 10938 29 100.0 32 ............................. TAATCCTTGACATCTTAATTTTATAATCTCCT 10877 29 100.0 32 ............................. ACACTTAATACGGCTGTCAGACTCGCGAGGTA 10816 29 100.0 32 ............................. CCCCCAGGATCTACCCTGCCTATAGAACTTTT 10755 29 100.0 32 ............................. CTGATATCCTGTACTATGGCTTTGGAGCTTGG 10694 29 100.0 32 ............................. CAGTGCAACTGCCGACCCTGCCTCTATAGTTG 10633 29 100.0 32 ............................. GCACGTTGGAGATAGAAACATAGGTGAAAATT 10572 29 100.0 32 ............................. CGCGCTTTCTCCATCCTCTTTGCTGTCAATTG 10511 29 100.0 32 ............................. CCCTTGATTCAGGAGAACCGACAGTATACACC 10450 29 100.0 32 ............................. CAGCCCAGATGCTATCAACGCTTTGCTGATTG 10389 29 100.0 32 ............................. CCTCTGTTATCCGGGTATGCCCGCGAGACTCT 10328 29 100.0 32 ............................. GCTATTGACCGGAGATTTGGAGCAGAGAGGGA 10267 29 100.0 32 ............................. GCAGTGACAAAAACCATAAAATCTATTGAAAC 10206 29 100.0 32 ............................. GTGATGGTACGGCGGTAGGGCAGTCCCCGGCT 10145 29 100.0 32 ............................. AAGGCTCTAAAAAAGTTCGCCAGGGACGAATA 10084 29 100.0 32 ............................. GAGGCTAAAAACATGACAAATGCACTTGCAAC 10023 29 100.0 32 ............................. TACCGGGCTGAAAGGTTCGCTCGGACATTCTC 9962 29 100.0 32 ............................. TAAACTGTTTTTCATGCAGACAAACTTAAAAA 9901 29 100.0 32 ............................. CACGATAACTTTGGCAAGTCCGTATAATACGA 9840 29 100.0 32 ............................. AATGATTCTGGCATCCAGGCTTTTCCCTGAAT 9779 29 100.0 32 ............................. CGGGCTTAAGCCTGCTTTTTTCGATGTTTTTT 9718 29 100.0 32 ............................. CATAGATTTCTTGTAGAATACTACAGTGTTAA 9657 29 100.0 32 ............................. AAAGGACGATCGTTCCGAGGTAGCCAGAGGTA 9596 29 100.0 32 ............................. ACAATATTACGTCCTTCATCTGGCATATTTGC 9535 29 100.0 32 ............................. GGACTTCTTCGGGATTTTCATATTTCTGTGCA 9474 29 100.0 32 ............................. CCTTCAATCTCGTAATCATCTAGTTTAGTAAT 9413 29 100.0 32 ............................. TTCGCGTTTCCATAATCATGAGAACGGAACAG 9352 29 100.0 32 ............................. GCTGCCAACTTGTCCGGCGGGTTGCAAACATT 9291 29 100.0 32 ............................. AGTCATTGCTCCAGCTCCAAACTACTATATTT 9230 29 100.0 32 ............................. TCATTAAACGATTTCTAAAATTCTCAGTACAA 9169 29 100.0 32 ............................. GAATGAACCGGGGACATAATGAGTAAAGTATC 9108 29 100.0 32 ............................. TCACAGGCAGATTTCATTGAGGCTGCAAAAAA 9047 29 100.0 32 ............................. TTACACTGTTTTTACAGGAGATGCTACAGCAG 8986 29 100.0 32 ............................. TACAGAGTACTGGCAATCGTAGAACAGAAACG 8925 29 100.0 32 ............................. ACGGCATCTGTATCAAAATGCAATCAGGTGAA 8864 29 100.0 32 ............................. TTTGAAATTTGCTGCTGTTACTACCATATGTT 8803 29 100.0 32 ............................. CTCATGCACATGCCTGTTGTTTCTGCAGTAAT 8742 29 100.0 32 ............................. TGATCGTTCTGCTGAGAATGGGCCAATTCCGC 8681 29 100.0 32 ............................. TGTTCAGCCTGCCTATCGCCCAGATCCCCGGC 8620 29 100.0 32 ............................. ACGGGATTGAAAATACCATTATTGATAACATC 8559 29 100.0 32 ............................. GACTCGAACCTTCATCACACGACCGATCGGAA 8498 29 100.0 32 ............................. ACCCTTTTATTGAATCATCAACGACACAAATA 8437 29 100.0 32 ............................. TTACCCCAGTCAGTAGACTAAACGTTATTAAT 8376 29 100.0 32 ............................. GCCCTGTGGAGTTAGAACAGGAACTGCGGTTT 8315 29 100.0 32 ............................. AGTGTAAAAGAGAGTATGGGTCCTCTCTTATT 8254 29 100.0 32 ............................. TTAAATGATGGGCTACACTGTTACGGATTGGA 8193 29 100.0 32 ............................. CCTACGTTATTTCAGGTGCTCCCCAAATATCA 8132 29 100.0 32 ............................. TTATTCTGAGTGACGGGACTACGTGGAGACTG 8071 29 100.0 32 ............................. TCTATTTTCTTTCCATTCCTGACGAGCTTCTT 8010 29 100.0 32 ............................. ACACCACTCTTTCCCTCAATGTCGTCGCTGGA 7949 29 96.6 32 ............................T ATTGCAGCATCTCTCAAAATGAAAACCCTGTG 7888 29 100.0 32 ............................. TTGAGAGAGAAACTTTAGATATTGTACTGGAT 7827 29 100.0 32 ............................. TCTGGAATCATACAAGTAATGTATATTTATAT 7766 29 100.0 32 ............................. CCCCCTTGCTTTAGCGGTGTGAGGAATTCCGT 7705 29 100.0 32 ............................. CCTCCGAAATTGCATTACTTAATCTAGTTGCG 7644 29 100.0 32 ............................. TACCGCTAGGTAAGGAAAAGCGTTATGTGTTA 7583 29 100.0 32 ............................. CCCCTGATCTGTGATTATTCCCACGATTTTAA 7522 29 100.0 32 ............................. GCTATGAACAATAATAGACATGCTATATCAAA 7461 29 100.0 32 ............................. CAGGTATTTAAAAAACGGCAGGGATCAAAAAC 7400 29 93.1 0 .......................A..T.. | ========== ====== ====== ====== ============================= ================================ ================== 65 29 99.8 32 GAGTTCCCCACACACGTGGGGATGAACCG # Left flank : TGCTGGAGGTCTTACTATTCCAGAGGAACCGCCTGAAGCTATTCCTCCTGCAATTCCAAATGAAAGGGGACTTAATGATGTTGGTCATCGTCCTTGAAAATACAACTCCTAGATTAAGAGGAAGACTTACTCTCTGGCTTCTCGAAATCAGAGCAGGAGTGTATGTGGGAGATTACTCGGTAAAAGTACGGGATATGATATGGGAGAATGTAGAAGCTGAGTTCAATGATGGAAACATCCAAGGAAGTGCCATTATGATATGGTCTGCAAGAAACGAAATAGGATTTGATTTTAAAGTCCTCGGCGAAAACCGCAGAATCCCAAGAGAAATGGACGGAATAAAGTTAATATCCTTCATGCCCGAAATAAAGACAGAAGAGTAAATTAGCCGGAGATACCATGCTGTTAAAATATTTTCTATTATATAATAAATTTAATATCAAGAATGTTTTATATGTCCCCGGAAAAACTTTTCCTCTTTTTAGTATAAAAGACAAAGA # Right flank : AAGGTGGTCTAATTATCGCAGTTTATTCCATCTAATTCGCAAGCAAGATCCACTAAAACAAGGATTGAAGCTTTTGTTATTGATACCGAAACCGCCTTTTCCGTTGAATTCGCGAGCATGGTCCATTAAGAGCCTATCCGAAAAATGTTGTTACCTGTGTAGATGCCCGACATTAATATTTATCGAAACTTCTACAACAGCCAATAGTATATCCTAAGTGTGGTAAAGAGTCTTAGAGACATCCGGAAGAGAAAAGGGAAGAGCTGGAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAACATCCTGAAAGGAAGTGTGAAGATACAAGACATACAGGAAGAGACCTAAACTGTATTATAGCAGAATAAGAAAAGAACTTCTGGCAGGAGGAATAAAAACTATGACAGAAATGACTCTAATCGAAGCACTGAAAAAACTTGCATTAATCACCAAAAAAGGACTGGATGAACTGATTCATATCCCAGGTAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACACACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //