Array 1 3048074-3049626 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045515.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-4295 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3048074 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 3048135 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 3048196 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 3048257 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 3048318 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 3048379 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 3048440 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 3048501 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 3048562 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 3048623 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 3048684 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 3048745 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 3048806 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 3048867 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 3048928 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 3048989 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 3049050 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 3049111 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 3049172 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 3049233 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 3049294 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 3049355 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 3049416 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 3049477 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 3049538 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 3049599 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3065941-3066458 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045515.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-4295 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3065941 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 3066002 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 3066063 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 3066124 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 3066185 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 3066246 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 3066307 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 3066368 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 3066429 29 93.1 0 ............TC............... | A [3066456] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //