Array 1 56690-55989 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQQ01000013.1 Actinomadura formosensis NBRC 14204, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 56689 30 96.7 31 .............................G AGTCGTCCACTTTGAACCACGTCATTGGCGG 56628 30 96.7 31 .............................A AGCGGGATGCCGTCCGCCACCAGCTGTGGGA 56567 30 100.0 31 .............................. AGGAGAACCCCGACTTCTTGCGGGGCTTGGG 56506 30 100.0 31 .............................. GGACCCACGCAATGCCCGCGATGGCGGCGAC 56445 30 93.3 31 ............................AT TTGGACCGTTCCAAAATCGTCCCGGAAACCG 56384 30 100.0 31 .............................. CATGCCTGAGACCCGCCCCTTCCACCTGGGC 56323 30 96.7 31 .............................G GCCGGACGCGCTGCTCCCCGGTCGTCTCGTC 56262 30 100.0 31 .............................. CATCATGTGATCGACTGAAAGCAACTGTCGA 56201 30 96.7 31 .............................G CGACGGTGGCGGCGTTGCCGGCGGTGGTGCA 56140 30 96.7 31 .............................A GGGCGTTCACATCGGCGGGGGGTCGGGGGCG 56079 30 93.3 31 ............................GA AGGCCGGCAAGGCCGCGAAGAAGGTAGGCGG 56018 30 90.0 0 ..............T............T.T | ========== ====== ====== ====== ============================== =============================== ================== 12 30 96.7 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : GAGGGAGGGTATCGCCACCCCGAGGGACCAAGCACCGTCACCTCGCGGCCGAGTCATCCTCCTGATTCTCCGCCCCCTTCGCCGGCGAAGGGCGCTTGAACACCGACATGGCTCAGAGCATCGAAGCACCGCCAGCGGCGCCTCCGGCCAACAACGACTGAGGCGGATTCGTCTGCGCTCAGTACGTCAGAGCCACCGTAGCTGCGGCGGCGACCGCCGCGATGAGCAAGATGAGGAGCGTGTACAGATCAAGGGAGGACTGAGGAGTGTCCACCAGTACCACCTCCTTTCATCACTTCAGCTCGAACCCCTCAATGCGTTAGGACCTACAGACGGCACAAGAGTCTTGTCCCGCGATTCCAGAACATGCAGTACTGGAGTCGTGTCGCAGAGGTAATCTTCCGACCAGAACCAACCGATCGCCGAGTCCGAAAATGTCCGAATTCTCAGAAGTGCTCGAAAACGGGGCTCTCCCCGAACAAACCCGCAGGTCAGCCAGA # Right flank : GAGATGCCGGGTCAGAAGGCGACTGTGGGGGGTGGTGGCTCCTCGGGGCGGGGCGGGACGCGTTCGATGGCGAGTTCCGCGGGGTAGCGGCGCCCGCTGCGGATGATCTCCAGGGTGGGGTGGATGCGGGCGCGGTCGCCGACTGAGAACGGACGGGTGCCGCCGCGCAGGTCGTGCCGGGTGCCGTCGCGGCGGATCAGGGTGGTGCCGTTGCGGCTCAGGTCCGTGATCGTCAACTGCGGGCCGTCGAGGTCGAAGCGCAGGTGGGCGCGGCTCACGCCGCGCCGGGTGGTCTCGTCCAGGAAGGGGGTCAGGTCCGCGGGGCCGGGGGAGCGGCCGGCCGTGACGGGGGTGCCCTCGGCCACCGGGAAGCGGTGCACCTCCCGGCCGTCCCGCATGATCTTGAGTTGGGCGATCCGCGGCCGCGGGCCGAGATCGGCCATCTCCAGCCCGTGCTGGTCGCATACCAGGTGGCCGCCCCGGACGCGCGGCAGCAGGAC # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 66461-67222 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQQ01000013.1 Actinomadura formosensis NBRC 14204, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 66461 30 96.7 31 .............................C CCTGGGCGCTCGGGTCGGTGGCGATCGGGTC 66522 30 93.3 31 ............................AC CGTGCCCACGGTGCATTTGCTGTACCGAGAG 66583 30 96.7 31 .............................A TCCGTAACACCGCAGATCAGGCGGCTGTCGG 66644 30 96.7 31 .............................A GCAGACCGACGTGCGCCGACTGATCTAGCTG 66705 30 96.7 31 .............................A TGTCCGGGCAGGCGCGACAGAATATGGCCGC 66766 30 100.0 31 .............................. ACATGTGGATGCGGCCCGGCGGCCGGCCGCT 66827 30 96.7 31 .............................C AGTGGCCGGACGACATCCCGTCCGGCTGGCA 66888 30 100.0 31 .............................. CCAATGCCCAGCGGCGGCGCTTGGCGGAACG 66949 30 100.0 31 .............................. GGATCGGTATTACCGGAAAGATTTCCGGCGG 67010 30 96.7 31 .............................C CGATCCCGAACCCGTCGCGGTCCCTGCCGCA 67071 30 96.7 31 .............................G TCACCAAGCCCTGGCAGTGCGGCGAGGGTGG 67132 30 100.0 31 .............................. GCGTGAGCCGCTCATCGGCCCGCACGTCCTG 67193 29 76.7 0 .........-..G......C.CC....GA. | T [67207] ========== ====== ====== ====== ============================== =============================== ================== 13 30 95.9 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCT # Left flank : ATGTCACCCTGCAAAGCGACCACGGCATGAACATCGCATCCGGCCGCAACTACGCCGAAGACGTGTACTGGTGACCATCATCATCCTCACCAACTGCCCCGCCGGCCTGCGAGGCTTCCTCACCCGCTGGCTGATGGAGATCTCCCCCGGCGTCTTCATCGGTGGCCCATCAGCCCGCATCAGGCAGGCCCTCTGGGACGAAGTCCACCAGTACGCCGACACCGGCCGCGCGCTACTCGCATACAGCACCAACAACGAGCAGGGTTTCACCTTCGAAACCCACGACCACAAATGGCATCCCATCGACCACGAAGGCCTCACACTGATCCGCCGCCCCAAGGCCAGGCCGGCCGTCTCCTCCAAACCCCCACCAACCGGCTGGAGCAAAGCCTCCAAACGCCGCCGCTACGGCAAACGCTAACCCAATGCCCGAAATGTCGGAATCTCACAAAGTGCTCAAAAACAGGGATCCCCGCCGATAAACCTGCAGGTCAGTCAGA # Right flank : TCCACGAGGCCGGATCCTCCATCACCGGCCCGATCACCGCGACGTCCGGAATGAACCTCTCCCGCGGAACCTGCGGCAGCAACTCCCGCCAGGCCGTGGCCTGTGATTCTTCGCCGCTCATGGATGCCTCTGCCAATGGAATCGCGCTAAGGGGAATCGTCAGCGTGCCGTCTTGAGGGGCAGCTGTTCGGCAGGGTCATGCAGTGCTGGCGCCGCCCGCGGGACTTGGTCGAGCAGGGCGGCGGCGATGTCGGATAGCCGCCGCAGACCCGCTGGGGCAGGCACTGAGGTCAGCCGTGCCATCAGATCGGCCAGGATCTGGATGGCCCTGGTGTCGTCGGCGATCGCGGACAGGGGCCGGGCCGCATCCAGCCGCTCCAGCAACTGCGTGGCGCTGTTCTCGTCATGGTCGAGCAGGCGCACGATCCCGTTGCCGTTCCACGCCCGCAGGCCGGCCGCGGGCGCCGGCCGTCTCCTCCCGCAACTGCTGAAGCTTCAGC # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //