Array 1 127927-128160 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOFQ01000001.1 Streptococcus equinus strain MPR1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 127927 36 100.0 30 .................................... TGGTGTTTACGAGGCTGAAATTGTTAACGA 127993 36 100.0 30 .................................... ACCATTCAATCAGACGCTTCCGCAAGGCTA 128059 36 100.0 30 .................................... TTTGGCACTTGTGATTTAAATAAACTTGAT 128125 36 83.3 0 ........................AAA...TCT... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 95.8 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TTTTTCACAAAGAAGAAGGTGGAAGTTTTTGGGTAGAATTTCCAGGATTCGGCGGTGGAACCAAAGGTAAAGATATCGAGGAAGCTATGAAGAATGCTCGTGAAATGCTTGAGAGTTCGTTAGCTGCGTGTTTAGATGAAGGACTTGCTCTTCCAAAAGTTATTGATATGAGTGAGCTAACCGTTGATGATGGCTTCATTACTCTGATTCAAGCTGATCCTTCACCGTATTTAAAAAAGACAAAAGCTATTCGTAAAAATGTTACGGTACCAGAATGGTTGGTCAGATTAGCTGACCGTGAGCAGGTAAATTATTCTGAGGTTTTAACAAAAGCTCTGGAGAAAAAGTTGCAACTATAAGTTTTAAGATTGTTCAGTAACGTTGAAAAATCAAGGTTTTTAAGGTATAATAAAGCTAATATTATGGAGCTATTCGAGGCTGAAGTCTGGCTGAGATAAATGGCGCGATTACGAAATTTCGTGAGAAAAATGGTCCACGAG # Right flank : CTAAAACTTTAGTGAAAATCACTTTCAATGTTTTTCAAAAGTTTTCTTTTATGGTAAAATTGAAAGTGAATTTATTTTAGTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGACTTGTTGGCGAAGTGCTTAAACGTATTGAACGTCGTGGTTTCAAAATTGAAAAATTAGAAATGCGTATGGCAACTCCTGAGTTGTTAGAAAAACACTATGAAGACTTGGTTGACCGTCCATTCTTCCCACTAATCGTTGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGAGAAGAAGTGATTACTTCTTGGCGTACAATGATGGGTGCAACAAACCCTAAAGAAGCTCTTCCAGGAACAATCCGTGGTGATTTTGCTCAAGCACCAGCTGAAGGCGCTGCAACATTTAACATCGTTCACGGTTCAGATTCACCAGAATCAGTAGAACGCGAAATTGC # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 129669-130297 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOFQ01000001.1 Streptococcus equinus strain MPR1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 129669 36 100.0 30 .................................... CTATCTTTTTGCTGATTAGTGGGATGATTT 129735 36 100.0 30 .................................... TGGCAACTTTAAAAGAGTTAGTGAACATTG 129801 36 100.0 30 .................................... CAAGACAGCTAAAATTTGGATGCAAGGTTC 129867 36 100.0 30 .................................... AACGTCTGATAGGCTAATACTGCCCAGCGT 129933 36 100.0 30 .................................... TGCTGTCTTTGGTGACTATAAGGAAGAAGC 129999 36 100.0 30 .................................... GATGACGACTTTTTCAATCAACCTATTGAA 130065 36 100.0 30 .................................... CATGTTTTTTATACTTAACGTTAACAGTTA 130131 36 100.0 30 .................................... TTGGACTAAAGTATTGAACGCAAACGTGCA 130197 36 100.0 29 .................................... GTCTCTACGTTATCTTCTTCATCTGAGTG 130262 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 100.0 31 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCATTCAGCTGTTGTTGTGTAAGTGCT # Right flank : CGTGACTACTAAATATGAATATAACAAAACCCCACCTAGTTCGTCACTGGGTGGGGTAATCTATGTGGGTCATAGGTTTGCGATGAGTTGAGTTTTTTATTATCTTTGCTTAAATAATAGCGCTTTCTATGTAATTTGTAAAATGATTTGCGGTAGCTGATTTTAGCGATATTTATCGCGCCTAGAAAACTTTTTATAGCACCAGTGGTGTTTATTTGTTATAATAGAAATAATGAATAATTGTATAGGATTATAGATAGATGGATATTCAAGAATTAAAAAAACGACAAGAAAAGATTCGCAATTTCTCAATTATTGCGCATATTGACCACGGGAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACGGAAACTGTCTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGCATGGATTTGGAACGTGAACGTGGTATCACAATCAAATTGAATGCGATTGAGTTGAATTACACAGCTAAAGATGGTGAAACTTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //