Array 1 334718-336847 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSHO01000045.1 Vibrio cholerae strain N2785 NODE_190, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 334718 28 100.0 32 ............................ GTAATACAGCTCTTTTCTGCTGTGCCATCTCA 334778 28 100.0 32 ............................ TCATTCATTCCGGTAACAGATTGAACAACGTC 334838 28 100.0 32 ............................ AGTCAGTCAAGTGATCATCAATACTCTTGCGC 334898 28 100.0 32 ............................ AAACGAACAAAAGCTCATGGTGCTTGGTTTCA 334958 28 100.0 32 ............................ TTCTAAAGAACCACCATTACCACCTTGAACAC 335018 28 100.0 32 ............................ TCATCATCTTTCGCTTTTTGCCGCCTCAGCTC 335078 28 100.0 32 ............................ ATCCACACCTTGAGCCACCATGTTGTTAAACC 335138 28 100.0 32 ............................ TTCTCGGCTTCAACGAGTTTGATCGGCTCTTC 335198 28 100.0 32 ............................ AATTTAGCAAAACAACTGGTATTGGATTGCTT 335258 28 100.0 32 ............................ TGCATCGTTGGCAGTTCGCGCTGACGGTCAAT 335318 28 100.0 33 ............................ TACAAAACGCCTTTACCAGTGCGGGCGAATGGC 335379 28 100.0 32 ............................ GTCAAGTGATTGAAGATCATTTTGATGCCGCA 335439 28 100.0 32 ............................ CGGTGTAGGCGTTGCGAGCCAGTCAACGAAAT 335499 28 100.0 32 ............................ TGAACGGCGTTACTCATGCCGAAGGCTGAGCC 335559 28 100.0 32 ............................ AGGTGGTGGCATGGGTGGAGCTGCTGGCGGAT 335619 28 100.0 32 ............................ ATTTGTCAGTGCCAATAAAGCCAAGACCATAA 335679 28 100.0 32 ............................ AGCCGAATCGAATATGGTTTGATCTTCGCGGC 335739 28 100.0 32 ............................ TCTAGAGCTTCGGTGATGAAGGTTCCGTATTC 335799 28 100.0 32 ............................ GTTAAAGCGATAACGGCCGATAAACTCCCGTT 335859 28 100.0 32 ............................ AAGTCTTTGACGTTGACACTACCGATCGCGAA 335919 28 100.0 32 ............................ CTGTTAGGCTTTCGGGTTGTACTGCTCTAGGT 335979 28 100.0 32 ............................ ATCACCATGAACATCGGGATGAGTGGTCGAAG 336039 28 100.0 32 ............................ ATTCGATAATACGACGTCGGGTAAGCGCTTGC 336099 28 100.0 32 ............................ CCGCCAAGGCGCTGCCTGTTGCCCAAATGCTG 336159 28 100.0 32 ............................ CTTGGCAGCTTCCCATCCTAGATTCCACCACT 336219 28 100.0 32 ............................ TTAAAGCTTTCCAGCGCCGTGCGAAGGCCGCG 336279 28 100.0 32 ............................ GCTTGTTTATTTCTCCTGTCGATTCTGCGTAC 336339 28 100.0 32 ............................ GTTAGAACCTTCTCAAAGTGGTTCATTGCCTG 336399 28 96.4 32 T........................... GGGGGTTAGGTTTTGCGCGTTATTCTTAATTT 336459 28 100.0 32 ............................ AGTGGATCAGTGATCAGGTTAACTTCGAAGTT 336519 28 100.0 32 ............................ AATGCTTTCTGGTGGCAGAATATCTCCTGATT 336579 28 100.0 32 ............................ TCTGAGAATGACTCTCTGTGGTTATAGCCAAT 336639 28 100.0 32 ............................ GAATTACGATAGTATTTCTGACGCAACTGATA 336699 28 100.0 32 ............................ ATCAGAGAAAAGGTCAAATGCCAACTCTTTGT 336759 28 100.0 32 ............................ TTGCGATGGCAGGATAAACAAGCTGGTGAAGC 336819 28 92.9 0 ......................G.A... | T [336839] ========== ====== ====== ====== ============================ ================================= ================== 36 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCTTATTGAATGATCTACAAGGTTTATGCTGGTTAGGGCCTCTCAGCGGTTATTGCCAAATCAGTGAAGTGTTAAGCGTTCCTGAGCAAGTTCAATACCGGGTGATCTCAGCTAAGCGCCGTAATTTAAGTGCTGCGAAGCTGCGCCGTTTAATTGCACGAGGGAGTATAAATAAAGAAGGTGAGCAGCGTTATAAAAAGAAGATGCTGAATCAGAGTATTAAAGGTCCATATCTTGACTTACTCAGTAGCTCGACAGGACAAAAATATCGTAAATTCTTTGAATTTGGTGAAATTCAGGACGTGCCTGTACTTGGAAATTTTGATACCTATGGACTAAGTCTTAAGGCAACAGTACCTTGGTTTTAACCCTATTTTTTCGCTCTTTAAAAATATGCCTAAAATACAATGAGTTACAATAGGTGTTTTTTAACAAGGTAAAAATACAATTTTTACCCTAACTGACTGTTGTAACTTACTTTTATAGATTTATTCTATA # Right flank : ATCTTTATATATCCTATAGTTGGGGTTATATAAATGACAGTTTGCGTTGAGATTTCCCGCTTACTGGCTGTATATCCAAAATTGTGGTAGCGTTTCCCACACTAACACCAGTCTATTAATTAAGCCGCTGCCCTTCGGGGTGGCGGTTTTTTTATGCCTGAAATTTGGAGCCGCACATGCAAGACAAGAAGTTATTGGGCGATGAACTCTCACCAAAATCGACCATTAATGCCTCTACGGATATGAGTCAGTCTGCCTTTTTACCGAAAGGCTTTCAGTTTGAAGCCCCTAAAGCGCCGCAACGTAACTACGATGTGACGTTAGGGGATACCGCTAAAGCCGTCGGTAGTGGCGCTCTGCGCTCACTGGCCGGCCTTGGTGAACTTTCGGAGAACTTCCTTGGTGTGGGTGAGAGCTTTCGAGATTTGATGTCGTCTGGCTCGGATTCTCTGCAAGAGAGTATGACTCAAGATGGCCGTGACGCCCTGAACTCCCGTATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 14874-18321 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSHO01000016.1 Vibrio cholerae strain N2785 NODE_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 14874 28 100.0 32 ............................ AGTAGGCCGGCAGACGTACCCGCGATAGATGC 14934 28 100.0 32 ............................ AACTCGCCCACGAGATCGGTTAACGGTGGCAA 14994 28 100.0 32 ............................ GGTGAAGTCCCCCGACTTAATGACCAACGGGT 15054 28 100.0 32 ............................ GTCACGGAATGAATCTTTACCCACCACGACTA 15114 28 100.0 32 ............................ ACGCTCGCTGCACGTTCGACACGGAGTGACGC 15174 28 100.0 32 ............................ ACACTTGTTAATCCGAACTCGGTAAGCACTTC 15234 28 100.0 32 ............................ GTACAGGTCGCTCCTACTGATACAGTGCCGAT 15294 28 100.0 32 ............................ GTTGAGTGAGTAACCGCGTGGGTAAGGGTTAA 15354 28 100.0 32 ............................ TGATTGTTACCAGGGCGCGCCACGCTCGCTGC 15414 28 100.0 32 ............................ TACCGCCAAAGCGAGCAACAGAAGTTCCAGAC 15474 28 100.0 32 ............................ ATCATTTCCCTTGCTTTGTCAGCAATGTGACT 15534 28 100.0 32 ............................ GTTCGGCAGCATTTGCGGATCAATCTGACCCA 15594 28 100.0 32 ............................ TGATGGTCTTGCAATAAATGCCCGATCAAATG 15654 28 100.0 32 ............................ TGAGCGCTGAATTACGCGCAAGCGTGCATCAC 15714 28 100.0 32 ............................ ATTCCGGCTGCAAACTCTGCACTGAAAATTGA 15774 28 100.0 32 ............................ AGTAATGAGCATTAACGGCGGCTCAGATAATG 15834 28 100.0 32 ............................ ATAATCGCCACACTTGAGGGCACTGGCTTTGC 15894 28 100.0 32 ............................ GTTAGGTAACAAAAACAACGCTTGCGGAGGCG 15954 28 100.0 32 ............................ GCTAATTGTGTCCATGTTGGCGCGAAGGTTAC 16014 28 100.0 32 ............................ TCGCTTTGGTTTCGTTCCTGCTGCCTTTTCAC 16074 28 100.0 32 ............................ AATTGGGGGCGTTTGCTCTCTTGAGGGGGCTT 16134 28 100.0 32 ............................ TTATCTAAAGTATCTTGCAAGAACTTAAAATA 16194 28 100.0 32 ............................ TCAATAAAAAAATGGTGTGCCTATTCAATGTC 16254 28 100.0 32 ............................ GCCTCAATCATCCAGTCGGACGGGCTTTTAAC 16314 28 100.0 32 ............................ ACTACGGCTGTGAATCTAGCAGTGGACATGGC 16374 28 100.0 32 ............................ TCTGTCACTTTCTCCTGTAATTTCGCTTGTTC 16434 28 100.0 32 ............................ TTGCCCGAAAAGTTGGCAAGAAAGAAAAATCG 16494 28 100.0 32 ............................ ACCAGTGATCATCATCCGGTGAGTTGGTATCC 16554 28 100.0 32 ............................ ATTCAATCGCTGCACCAGCAGTTGATTGACTC 16614 28 100.0 32 ............................ CAATCAATCGAGAGGGAAAATTGAAATGTTTG 16674 28 100.0 32 ............................ TTTAGCGTTACCACCCACTAGCGAGTCATAGT 16734 28 100.0 32 ............................ CGTACAAGTGACAAAATCCGGTTACAAAGTGG 16794 28 100.0 32 ............................ AGCCGCAACAGACGGGCGAAAGATAACCCACG 16854 28 100.0 32 ............................ TTTAGTCTTTAGTGATTCCTGCTGCGGGACTC 16914 28 100.0 32 ............................ AGTTCCCTTGCCGCCGATGACTCGGATGGGTG 16974 28 100.0 32 ............................ AGAAGCAAAACCCTAGAATCGTAGCCCACGAA 17034 28 100.0 32 ............................ CGTTCATTGATTCGGTTTTTGGTTTTCGCTTG 17094 28 100.0 32 ............................ CGTTCTTTGCTCGCCTCGCAACATGAAATACT 17154 28 100.0 32 ............................ TATTAAGTTTTTCTTTCTTGGCTTCTTTAGAT 17214 28 100.0 32 ............................ GTATTAACGGGCAATGCCATGGCTTACCCCGT 17274 28 100.0 32 ............................ CATGAGCTTTAGCGCTTCGGTTTGGTTTTTGC 17334 28 100.0 32 ............................ TGACGTATTGCCGAGGGGGATTGCTGGCTTCG 17394 28 100.0 32 ............................ TTCGATGTGCAAAGAGGTATCAGCTCCGGCCA 17454 28 96.4 32 ...........T................ TCGACGCTCTAAAGTCCAAACGTTATCGGGAT 17514 28 96.4 32 ...........T................ TAAATGTGGAGCCAGAAAAGCTGCGCGTTTAC 17574 28 96.4 32 ...........T................ GTTGGCGATCAGATTGTGGTTAACCAAGCATC 17634 28 96.4 32 ...........T................ AGCATGTAGACAAAAGCAAGCTTGAAGCTTTC 17694 28 96.4 32 ...........T................ TTCATGCGGCGAATAGCTTCAATAGCAATAGT 17754 28 96.4 32 ...........T................ TGCCATTTGCGCTTTAAGCTTTGCGATGTCGT 17814 28 96.4 32 ...........T................ GCGCTAAGTGGGCAATTAGAGATAAGCATGGC 17874 28 100.0 32 ............................ GGATAGGGCGTTAATGTGTGCTCAAGCCGCTT 17934 28 100.0 32 ............................ AGTAAAAACGCCCCCGCACAAGGCGGTTTCGG 17994 28 96.4 32 ....................T....... TCAAAAAATTGCACGCATGGCCACCGATACGG 18054 28 96.4 32 ...........T................ AAACAGATATAAGCGCATCGGGCTTTCACCCA 18114 28 100.0 32 ............................ TGAATGAAGAGTCAGGCGAGATTGATCTCAGC 18174 28 100.0 32 ............................ TTCAAATGGCTTTACCACTCTCACGGCTTCCT 18234 28 100.0 32 ............................ GTATCGGGCGCGAAGCGCAACGCGAAGCGTTG 18294 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 58 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCATGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAATCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCTCAAGATGGGGGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AAGAAATAAATATCCGACGGAAAAACAAAATCTCGATGGCCGCTTATCGGTTTCATTACTTCCAATAGCGCCAGCATCTGCTCAGTGAGAGGGATGCGGTGTTCTCTTCTTTTTTTCATTCTCTCTGTGGGAATAGCCCCAACTTTCTCATCCCAATCAATGTCGTCCAACGCGCACTAGATGGCCTAGGCATACTGGTGTGTTACCACTTATTTAGGCTTTCAGTAAGTGCAAATATCCAGCACCAGCCACACTGTAACTTCCATAACTAGATTTTTCGATATGCTCACTCCACCAGCTCATAAGCTTTCGACGAGAGTCTAAATAGTCGGTGCGGTTGTATGCTTTGCGTATTTGGTTTTTGTCAGTATGAGCCAATGCGGCTTCAATGACATCAGGTTCAAAGCCCTGTTCATTAAGAGTGGTACTTGCCAAAGCACGAAGACCGTGCGCGGTCGTTCTATCCTTAAATCCCATTCTGCTAAGTGCTTTATTAGCGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //