Array 1 295892-297077 **** Predicted by CRISPRDetect 2.4 *** >NZ_MODA01000035.1 Salmonella enterica subsp. enterica serovar Newport strain R8_5931_R1 NODE_4_length_423574_cov_0.782544_ID_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 295892 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 295953 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 296014 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 296075 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 296136 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 296197 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 296258 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 296319 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 296380 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 296441 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 296502 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 296563 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 296624 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 296685 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 296746 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 296807 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 296868 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 296929 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 296990 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 297050 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 313747-315362 **** Predicted by CRISPRDetect 2.4 *** >NZ_MODA01000035.1 Salmonella enterica subsp. enterica serovar Newport strain R8_5931_R1 NODE_4_length_423574_cov_0.782544_ID_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 313747 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 313808 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 313869 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 313930 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 313991 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 314052 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 314113 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 314174 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 314235 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 314296 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 314357 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 314418 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 314479 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 314540 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 314601 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 314662 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 314723 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 314784 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 314845 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 314906 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 314967 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 315028 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 315089 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 315150 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 315211 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 315272 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 315333 29 100.0 0 ............................. | A [315360] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //