Array 1 431756-432881 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHBM01000003.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N7328 contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 431756 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 431817 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 431878 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 431939 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 432000 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 432061 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 432122 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 432183 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 432244 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 432305 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 432366 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 432427 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 432488 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 432549 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 432610 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 432671 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 432732 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 432793 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 432854 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 449131-450794 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHBM01000003.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N7328 contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 449131 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 449192 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 449253 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 449314 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 449381 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 449442 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 449503 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 449564 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 449625 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 449686 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 449747 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 449808 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 449869 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 449930 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 449991 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 450052 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 450113 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 450174 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 450235 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 450338 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 450399 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 450460 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 450521 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 450582 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 450643 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 450704 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 450765 29 96.6 0 A............................ | A [450791] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //