Array 1 8-878 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQXE01000003.1 Desulfovibrio oxyclinae DSM 11498 B149DRAFT_scaffold_2.3_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 8 28 100.0 32 ............................ GGCAACTCCGAGCTGGTCCAGCAGATCAACGA 68 28 100.0 32 ............................ AGCGGTCACCGGACATCACAGCCGCGAGACCA 128 28 100.0 32 ............................ TGAAACCCTGCGGCGCGGCATGGCCTCCCGCG 188 28 96.4 33 ......A..................... ATGTTCAGGGCGAAGTCATTGCGGGCTTTCTTG 249 28 100.0 32 ............................ TCCACGTCCATCGCGCTGGCCTTTTCGATGGA 309 28 100.0 32 ............................ TGTTTGAGGTCGCTGACGAACATCACGTGGAT 369 28 100.0 32 ............................ ACGAGCTTTCTGACAACGCGGGATATGGATTC 429 28 100.0 33 ............................ AGTTGAAAACTGTTCCATAGTCTGCGGCATCAA 490 28 100.0 32 ............................ CGATCCACCCTTTCCATCAACGAGAAAGGTGG 550 28 100.0 33 ............................ ACGCCCGAGCGAGGGGGCAGGCCACCGAGTACG 611 28 100.0 32 ............................ AGATTGCCGCTTTTATGTTGGCAAGAGTCTGT 671 28 100.0 32 ............................ TCCATTCCGCACGCTCCATGGCATCGCCCACG 731 28 100.0 32 ............................ ATGACCCAGTCGCGCAGGGTGGAACCGTATCC 791 28 100.0 32 ............................ GCGGGCAATGACTGCGGCGCGCAGGCTCTTGG 851 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 15 28 99.8 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : GTTTTGTG # Right flank : AAACTCCCTCCATATGAAGGGTCAATAAAAACGAGTAGTGCAATAAGGCCTGACGCAAAACCCTAATACAGCTTTGTATGGCCGACCTAGTTGATATCTTTAAAACATGTGCAGGGAGCACGGCAACGCCAACAAATGACACACCGAGACCCGTTCAGCAGGGACAGCCCTTCGTATCCAACCCCGAAAAACAAAAAAACCCCCGAAAAATCGGGGGCTTTCGGACCACATTGAACGTGGCGGTTCTGTCAATTGGCGGCGGGGGTAGGATTCGAACCCACGGGCCTCGTGAAAGGCCAACGGTTTTCAAGACCGCCTCCATAAGCCGGACTCGGACACCCCGCCGCTGCAAAGCTCGATATCTTATGCACTTCCGCAATTCTGTCAAGCACCCTCAAGATTGATTGACACGAAAGTGATTCTTCCCGTATTGAGAAGCATATTCAACAATTAAAACCTATTGATTCGAATGAAAACGCCACAAGAAGCCTTCACGCAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.68 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 167302-166675 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQXE01000010.1 Desulfovibrio oxyclinae DSM 11498 B149DRAFT_scaffold_9.10_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 167301 28 100.0 32 ............................ GTTCCCCCCGTCGACGAACTCTTACTGGCGAC 167241 28 100.0 32 ............................ AGCATGGACACGTGCACACCGGTGGCGTCGAA 167181 28 100.0 32 ............................ GTACTGCGCCAGATCGTCCGGCAGGTACGGGT 167121 28 100.0 31 ............................ GCCCCCACCCGCGCAAATCCAGACCGGCCTC 167062 28 100.0 32 ............................ ATGGACCACCGCACGTCCCGGGCGATGGCCTC 167002 28 100.0 32 ............................ TGCGCGAAATGCACGTTCGCCACGTAGCAGTC 166942 28 100.0 32 ............................ ACATAAACGCATGGATGTTCCTCTTTTGTTTC 166882 28 100.0 32 ............................ GAATTTGACAACCGCTTCGGCGGCATCTTCGC 166822 28 100.0 32 ............................ TGCTGTGGGTCAAAAACTACGTTACCACCTAC 166762 28 100.0 32 ............................ TGATCAGGCATGGAGTTGGTAGCAGGCTTCCG 166702 28 92.9 0 ............A..............G | ========== ====== ====== ====== ============================ ================================ ================== 11 28 99.4 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : GGGGACTTGGAACAGTTGTTCTCCCGTCCATGGCTTGCCACGCTTCGCGATTACGTAAAGTGTGGTGAGTTGTCGGAAGTGCCGCAGACGGCGAAGCATCGTGTCGTGCGGCGCGTGCAGACGAAAAGCAATCCCGAAAGGCTACGTCGGAGGCTGATGAAACGGCATGGACTCACGGAAGCCGAGGCCCGGGAAAGGATTCCGGATACGGCTGTGAGACTGAGCACGTTACCGTTTATCAACATGCAGAGCAGCTCCACAGGACGGCGGTTCAAGTTGTTTATCGAGAATGGTCCCGTGCTGGACTCTCCGGTTGCCGGTCATTTCAGTTCCTACGGTCTTAGTCCGACTGCGACGATCCCCTGGTTCTGACCCTTTTATTTTGTTGAAAATGAAAAACAGCTATTCCAAAGGGTTAGTGTTTTCATTTTTAAAAGGGTTTTTGGGCCAACAATGAGCAACCCGACTGATGTTGTTGGAGAAGTGTCAGAAAAGTTCTT # Right flank : TATGTCGAGCAGGTCTGTAGCCATGAATTTCATGCACAGTCAGTTAAAGGGGATGCAGCTATCGCCGTTTGCACGTGGTCGATGGCTTCAACCGTGAGGGATCAGGGCTGAAAGTGACTTCTCCCTATCAGCGGAGCGCGTGAACCGATCCTTGAAGCTGTTCATACAATAGTGTGCTACCCCCCGCGACTCATTCGTTGCGATAATTGCCCTGAACGCATCAGTCATCGACTTCAGGCCTGGGCAGGCCATACGGAAATTCAGCTTATCCAGCCAGACCGGCGAGCGACCGCACCTCGCTCTTGGGGTCCCCAAGAGCGAGGCTTGCCGTGGTGGCATAAGGCTCTACTTTACAGTCCCCTTAGAGGGGAGAGGATTACCGGTTGCTCTTTTCCTGAAGAAAAGCGCCATGGCACCGCCGCCCGCCAGAAGCAGGAAGATGCTTGATGGTTCCGGCACCGGCGCTGCGTCGAAGTTGATGCCAAAGGTTTCCTGACTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 175910-176057 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQXE01000010.1 Desulfovibrio oxyclinae DSM 11498 B149DRAFT_scaffold_9.10_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 175910 28 100.0 32 ............................ GTGGTGGCGCTCTCCATGAGCGAAAGATCGGA 175970 28 100.0 32 ............................ GCTGAACGAAACCTCTCCGTAGTCGGGGAGGC 176030 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : CGCAAAATCCTACCAAAACCCCGGCCTTGGAAAATTCCCTCATGGCCGCCTGCGTTATCGATGTGCCGGTACCCAACAGAATGCTTGTGGTATTGGCTATGGGAATGTTCCAGTATAAAGAACGCCTACCTTCATCCGTTACATATTCGACCCTCCCCCCATTCACCAGCACCCTGCAATACTCAAGGTAGTATATATTTGCTCGTTTGGAATGAAGAATGGTCTTCAGTTCCGAGGAAGATATGCTCTGCATACTGTCACCCAGCTGCCTGCCTAACTAGATAAAACATTATTATATATAGACATGAAGCAATAGATCCAGTCAAGACATAGAACACGTCAAGTTGGCAAGCATAAAAATGAACCGCCAGACCCTTCTAAAAACCCCCAAAAATAAACAATAAAAATCAGAATCTTAAGACATCAAGATTTAGAAGGGTCAATTCAGTTATTTGCTTTAATTAAGAATGACGATAGAAGGTTATTGGAACTTGGCTCTA # Right flank : CGAAG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //