Array 1 7250-6185 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCIR01000077.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SE159 HEIDELBERG_S12_trimmed_contig_83, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7249 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 7188 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 7127 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 7066 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 7005 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 6944 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 6883 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 6822 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 6761 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 6700 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 6639 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 6578 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 6517 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 6456 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6395 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6334 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6273 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6212 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 28970-27306 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCIR01000008.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SE159 HEIDELBERG_S12_trimmed_contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 28969 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 28908 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 28847 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 28786 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 28719 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 28658 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 28597 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 28536 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 28475 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 28414 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 28353 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 28292 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 28231 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 28170 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 28109 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 28048 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 27987 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 27926 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 27865 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 27762 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 27701 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 27640 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 27579 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 27518 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 27457 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 27396 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 27335 29 96.6 0 A............................ | A [27308] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //