Array 1 381-2198 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVZG01000008.1 Neisseria meningitidis strain MRSN431185 MRSN431185_contig00008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 381 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 447 36 100.0 30 .................................... TCAGGGCTATCGGGGCTGACCGGTTTATTG 513 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 579 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA 645 36 100.0 30 .................................... TCCATGTGAACTCGTTGGCGCGTTCGATGA 711 36 100.0 30 .................................... TAAACCTCTGTCGGTTGGTTTGCTTAGATT 777 36 100.0 30 .................................... CGAATTGGAAAAGTTGCCCTACCGGTGGGG 843 36 100.0 30 .................................... GTCGCATGGTAAAATAACCACCGCTTTACA 909 36 100.0 30 .................................... AAACTAAAACTTTGGAAAGTTGGAAAGTTG 975 36 100.0 30 .................................... CGGCGCATCCCCTTTAATTTAATATCACTT 1041 36 97.2 30 ............A....................... TTTTGTGGAGTTTTGTTATGAGTGAGGGCA 1107 36 100.0 30 .................................... AAGCATTGACGATATTTGTGTGGCGTTGCA 1173 36 100.0 30 .................................... AAACGCCGGTAGGTTTCGTCTGTCTCCATA 1239 36 100.0 30 .................................... CTGCAAGCATTTTCATCATCGGCTGTCGTA 1305 36 100.0 30 .................................... GGAAGAGCGGCATCTGAATGCGGAAGAAGA 1371 36 100.0 30 .................................... CATCAAATCATCCGCCGCGATTCGATCGCA 1437 36 100.0 30 .................................... ATGATGCCGAAACCCTGCAAGCCCTGAATA 1503 36 100.0 30 .................................... GCCTGATGCCGTGTCGTGCGACACCTGAGA 1569 36 100.0 30 .................................... ACCAAGATATATCAAAATTGTAGATGAAAA 1635 36 100.0 30 .................................... TGCGGAAAGCCTCCATGCTTTGCAGCACTG 1701 36 100.0 30 .................................... AATTTGCGCCTTGCTGCATTGTGTAGTTTG 1767 36 100.0 30 .................................... TTCTTCCCGATTGAGGTTGCTAGTTTTGTC 1833 36 100.0 30 .................................... AGTCAATGAATCACTAAAAGCCAAGTCAGA 1899 36 100.0 30 .................................... TTTTTCGATTTTTTATATTGAGCGTTTTTG 1965 36 100.0 30 .................................... AAAAAAGTTGCGGGATAAGTTACAGTTTGA 2031 36 100.0 30 .................................... TGAATCGATATCGAGCCTGCCGGCGGGGGC 2097 36 100.0 30 .................................... AAACCGAGTTCAACCGCCACGTCGAAGACA 2163 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 28 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTGG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //