Array 1 857620-852202 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011532.1 Xanthomonas oryzae pv. oryzae strain XF89b chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 857619 31 100.0 34 ............................... CAAGAACACAAGGCACGCAAGACACTGAAAATCT 857554 31 100.0 34 ............................... TCCTGCTGTTTGTTAATATTCTCCACCTCTCTGG 857489 31 100.0 33 ............................... CAGCCTTCGGTAGTCGTGTCGAAGTACCAAGTT 857425 31 100.0 35 ............................... AAGATCCTCTGTTACATCCCTGCCAACATTAGACA 857359 31 100.0 35 ............................... AGCGCAACATGGTGACGGTCCTGGCGGAAGAGCGT 857293 31 100.0 35 ............................... CCGAGCTATTGCCAGCTTATTGTCGAAGGGTACAG 857227 31 100.0 36 ............................... AGCCAAACGATTGGTGTAAGCCAGTCTGGTAACGAG 857160 31 100.0 34 ............................... CCTCGTTGGTGCATTCGATCTGGCTGCCCAGATC 857095 31 100.0 36 ............................... CTGCCCGAACACTTCGAAGAACCCCCGGTAGAGGTA 857028 31 100.0 34 ............................... CAATGTTGCAGGCCAGCCTGGCCGAGTATCCGGC 856963 31 100.0 34 ............................... TGTGAATTTGCAGCTATGTTGCCCTCAGCCTCTG 856898 31 100.0 35 ............................... GCAGCACCGTAGACAACAAGCAGGCATTTCAGTTG 856832 31 100.0 34 ............................... TTCGTTGCCGTGCTGCTAAAGGTTAGCTGCACAC 856767 31 100.0 34 ............................... CAGCGGGATGAGGCGGAGGCGCGGGCACGTGTGG 856702 31 100.0 34 ............................... TGACACCCTTGACCCAGATCTATTCCATGAGCTC 856637 31 100.0 34 ............................... TGTGCATTTGCAGTTATGGTCCCTTCCGCCTGTG 856572 31 100.0 34 ............................... AGCTGATTACGCCCCCAGCTACCAGACATGCTAA 856507 31 100.0 34 ............................... CTTAATCCCGGGGATGTCTACGCCGCCTCGCCCT 856442 31 100.0 35 ............................... CAGCAATCACTGCTGCTAATCCGTCTGTTGCGACT 856376 31 100.0 34 ............................... TGCCAGGAGAAGGGAAGCTCAAAACTCCGAACCC 856311 31 100.0 34 ............................... TTACTCCTCAGGGTTATGTTAGGTTATACCACAT 856246 31 100.0 35 ............................... ATTGACATACCTGCATTTCAGGCTTTTATTTTGCA 856180 31 100.0 35 ............................... TTGTGTGGCTGTATCTGCACTGTGTGTCGTAATAT 856114 31 100.0 34 ............................... GACAATGGCGTGTCAGCTGCTCTCGGTGTAGGGT 856049 31 100.0 34 ............................... GCGGCCTCCAGCCTCTCAGCAAGCGACTTCGAAC 855984 31 100.0 33 ............................... CAGGCGTCTGCAACACAGCAGCTCCAAACGCTG 855920 31 100.0 34 ............................... CAGCTTAGCGGTAATATCAGTCATTTTATTGGTG 855855 31 100.0 36 ............................... GACCAACAAATTGCCAAGGCTGATATCAGACGCAAC 855788 31 100.0 34 ............................... CCAGCAGGACTTGACCGCATGGTCTTTGCAGCTG 855723 31 100.0 37 ............................... CAATCAGATGCTTGAGCAGTACCCAACCCGTCTTAAC 855655 31 100.0 35 ............................... TTGGTCTTAAGCCCAAACGGCACAGCATTGTGACC 855589 31 100.0 35 ............................... AGGCTGTCGGTGACATTGGCCAGGGTGGCTTCCAG 855523 31 100.0 33 ............................... CAAGTGTCCTTACAACGGTGAGGGCTGTGTCTG 855459 31 100.0 34 ............................... TCCTTGCGGTATTTGTAAATGAACTCCTGCACCC 855394 31 100.0 36 ............................... ACGTTGTCCAGCATGTCAAAGACCACCAGGCCGGCA 855327 31 100.0 35 ............................... TCGCTCACGGACACGGAGTCATTAAACGTCATAAA 855261 31 100.0 35 ............................... TACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 855195 31 100.0 37 ............................... TGTCAATGTGATGCTGTAACAGGTCCGCCCTTAGCCG 855127 31 100.0 35 ............................... AACACAGTTAGGCACATATGCCAGTATCTTGACCA 855061 31 100.0 33 ............................... ATGACGGCCAACAGGTGCGTCGCCCGGACGGCG 854997 31 100.0 34 ............................... CGGTCACGACCACGAGCCCTGGGCGTTTTTCGCA 854932 31 100.0 35 ............................... GATGCGCGCCTCTGGAACGAGGTCCTACCCCGCTG 854866 31 100.0 35 ............................... TCTCACGGCCACTGCCGACTCGTATGTCATGGTCC 854800 31 100.0 34 ............................... CATTGGTGCCTGCCTGTGCCAGTATGTATGCATG 854735 31 100.0 35 ............................... AATCGAGATGAGGCGGAGGCCCGGGCACGTGTGGA 854669 31 100.0 35 ............................... AAGCAATGGCGCTCGGCCAGCCTCTACAGATCCGC 854603 31 100.0 34 ............................... GTCGCCGGGTACCAAGCGGCAAACCTCACACCAC 854538 31 100.0 35 ............................... GCCACCCCCGACGGCCATCACACCGTCAAGGGAAA 854472 31 100.0 35 ............................... TTCGGCGTCCCGCCGAGCATGATTGGGCACAGCAG 854406 31 100.0 36 ............................... TTGACAGATGATCAGTATGACAGCTTTGCCAAGAAG 854339 31 100.0 35 ............................... AACTGAAAATTAACTCTATCTAACCAAAAGGAACC 854273 31 100.0 34 ............................... GTGAAATACTCGCTCGCAATCGACTTGATGAGCG 854208 31 100.0 35 ............................... CGCTACGATCCGGCATACGGGACGTAGGGTTGCAC 854142 31 100.0 36 ............................... ATCACGCGGACGAACAAGCCCTCATCGCGCGATCCG 854075 31 100.0 36 ............................... TCCCTCTGTTTGTTAATGTTCTCAACCTCTCTGGAA 854008 31 100.0 35 ............................... CTCTGGGAGACGGCGGATATGGAGATGTGGGAAAG 853942 31 100.0 34 ............................... CCTTTCAACTGGGCAAGTCCTAAGCAGAGGTCAG 853877 31 100.0 36 ............................... TCCTTGCGGGCAGTAAATACATCTGGCCGTCTATCA 853810 31 100.0 34 ............................... CCCTTGGTGCCTATTGTGCCTAAATCTAGGCACA 853745 31 100.0 36 ............................... CACACCGACGGCGGCGGCGTGCGTACGTTGCGCCTC 853678 31 100.0 35 ............................... GGCACGGGGACATCGGCGGTGCCGTCAGACGCTAG 853612 31 100.0 36 ............................... AACGCGTTGTAAGCCTCGTGCCCGTGCTGCGTGATG 853545 31 100.0 35 ............................... CGGCAATCGACGGCGATCTAGGCCCCGACGATTTA 853479 31 100.0 36 ............................... TTGACGGTGACGGTGTACGCGCCACCGGTGTTATTG 853412 31 100.0 37 ............................... AGCGACGCAATTGCACTACTGCTCGAAGAAGGCTGTA 853344 31 100.0 34 ............................... GCCAAGGGCTGGACGAACCGGCGGATTCTGGCGG 853279 31 100.0 34 ............................... TGGCTCCGTTGGGTGGTTGGTAAAGCCATCGGAG 853214 31 100.0 34 ............................... CAATGGTTAGTGCACCTGGTCCTCGGCAACGCTC 853149 31 100.0 34 ............................... GCGCGGAGTATCGGCGCAGTACACACCGCTCCCG 853084 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 853018 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 852952 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 852887 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 852822 31 100.0 35 ............................... ACGTTCAAGCCGCTCGCCCTGGGCGACCGGTGGGA 852756 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 852690 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 852626 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 852559 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 852494 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 852429 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 852362 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 852297 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCGGCGCAGGCTGGCC 852232 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 83 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCGGCGTTCCTCAAGTGGTGCCCAGCTTGCTGGCCGCCGCAGCCGCCAGCAAGCCGTGGTCCGAGCGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //