Array 1 165800-165160 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTAJ01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain V73 isolate V73, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 165799 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 165738 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 165677 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 165616 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 165555 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 165494 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 165433 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 165372 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 165311 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 165250 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 165189 29 96.6 0 A............................ | A [165162] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 183485-181932 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTAJ01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain V73 isolate V73, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 183484 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 183423 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 183362 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 183301 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 183240 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 183179 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 183118 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 183057 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 182996 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 182935 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 182874 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 182813 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 182752 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 182691 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 182630 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 182569 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 182508 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 182447 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 182386 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 182325 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 182264 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 182203 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 182142 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 182081 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 182020 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 181959 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //