Array 1 219153-220706 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYON01000003.1 Salmonella enterica strain BCW_4905 NODE_3_length_344732_cov_1.83342, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 219153 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 219214 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 219275 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 219336 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 219397 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 219458 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 219519 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 219580 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 219641 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 219702 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 219763 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 219824 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 219885 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 219946 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 220007 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 220068 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 220129 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 220191 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 220252 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 220313 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 220374 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 220435 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 220496 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 220557 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 220618 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 220679 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 236839-238315 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYON01000003.1 Salmonella enterica strain BCW_4905 NODE_3_length_344732_cov_1.83342, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 236839 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 236900 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 236962 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 237023 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 237084 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 237145 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 237206 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 237267 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 237328 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 237389 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 237450 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 237511 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 237572 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 237634 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 237695 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [237737] 237737 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 237798 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 237859 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 237920 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 237981 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 238042 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 238103 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 238164 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 238225 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 238286 29 96.6 0 A............................ | A [238312] ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //