Array 1 88689-89084 **** Predicted by CRISPRDetect 2.4 *** >NC_017590.1 Thermus thermophilus JL-18 plasmid pTTJL1802, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 88689 37 97.3 36 ...........T......................... CTTGGCAGGAATTTCTCCCCTAGACAGGAGCGCCCG 88762 37 100.0 35 ..................................... GGGGCCCCATGTGCGCCTAGAAACCACGCTCGCCG 88834 37 100.0 33 ..................................... GGGAGCGGGGGTCAAGGTCCACAGGAACCCGGG 88904 37 100.0 34 ..................................... AGGCCATTCCTTACTTTGAGGCTCATCCAACACA 88975 37 100.0 36 ..................................... CAGTGGGGAGGGCGGCGTCGTTGTCGGGAATGATCT 89048 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 6 37 99.5 35 CCTGCAACGTAGCCAAGCTGTGAAGCTTGGATGCAAC # Left flank : TCCCCCGTCCCCAGGTAGGGGTAGTGCCACAGCCTCAGGGGAAGCCGCTTCCCCAGGGCCGCCGCCCTCGGAAGGACCTCCACGGGGTCCAGGAGCCTCCGGCCCCTGAGCAACTCCCCGTAGCGCCGGGCCGCCCGGGCCACCCGGGCAAGCCTGGGGGAGGCCTCCTCCGCCAGGCGGGCAAGCGCCTCCTCCCCCTGGCCGGAGGCCTGGGCGAGCAGGAGGAGGGTCCTCACCGGGCCCTCGAGGGCCGCGGCCAGCCCCTGGGGGTCCTTCGGGGCGAGGGCCTCCCGCACCGCCTGCACCAGCAGGCGGCGGGCCCGGTAGGGGGAGGCCACCAGGAGCCCCCCGTCCCTTAGGAGCTCCCGGGCCAGCCCGGCCAGGGTGCGGTAGGGAACCCCCAGCCTGCGGGCCACCGCCCGGTTGGGGGTGACGTGTATCAGTCCTGGGTCCTCGGCGCGCACACCTTACCTCCTTTCTTCGCTATTTTCGCCTGCCTT # Right flank : CTCCCCCCCTGACTGGGTCCCTCTGGAAGCCGGTTTTCAAGGTTCCCCGCGCGAACCTGGGTTGAGAGGGCTTCGCCGCGCGCCGTGATTATACCCCTTCCAACGCCAGTAAATCCCTTCCCCAAGGGCCTAACGCCCCCTGCGCGAACCCCCCGGGGTTTGGGCGCCCGCTTGGGGTCCGCGCAGGACGGGCCGGGCCTCCACATAGACGGGGTAGGGGTCCTTCTGCCGCTTAGGGTGGCCCAGGCGGGGCGACCGCCAGAGGGCCACCTCCGGGGGCCAGGCCCTGGGGTCCTGGAGGGCCAGGGGGGCCTGCAGGAGGAGGGCGCGGAGGGCCTCCAGGGAGACGGGGTGGCCCGGAGTGGGGAGGAGGAGGCTCGGCTGGCCTTCGGGGTCGTGGACCCCCGCGGCCCGCACCCCGTCCGGGGCGGGGTAGAGGAGGAAGAGGGGGACCGCCTCCCAAGCCAGGAGGGTGGCCACGGGGTGGATGCGCACCTTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTGCAACGTAGCCAAGCTGTGAAGCTTGGATGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.10,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 1 42373-40872 **** Predicted by CRISPRDetect 2.4 *** >NC_017588.1 Thermus thermophilus JL-18 plasmid pTTJL1801, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================================ ================== 42372 29 100.0 33 ............................. GCCTCGGAGGGTGGGCTGGTCCTCCTGGCCATC 42310 29 96.6 32 ............................C CCCACCAGGGCGGCGGCAAGGGCGAGGGCGCC 42249 29 100.0 33 ............................. GAGCTGGCGCCTAGATGGAATGAGCTGCTGAAC 42187 29 100.0 32 ............................. ACCTGTTGCATCCCCTCTCGGATGTGGAAAGC 42126 29 100.0 32 ............................. TATCGTATTGACAAGGCCATGATGGAGTCCCT 42065 29 100.0 32 ............................. CTCAACCCCGAGCAAGCGGACGCGTTCATTGA 42004 29 100.0 32 ............................. CCCTGGCGGCGGGCTGGCCGATGCGGGTGGGG 41943 29 100.0 32 ............................. AATGGCTTCATTACCGATGAGGGGAGGGCCGA 41882 29 100.0 32 ............................. GTGCCCTACCTTGACGTTCCCACCCTCCGCCG 41821 29 100.0 32 ............................. GCGCAACCCTTCCTGGAGAAGGTGATCCCCCT 41760 29 100.0 32 ............................. GCTACCGAGCCCGCGCCTACTACCGAGCCCGC 41699 29 100.0 32 ............................. AAGGGCTGGCCCTCCTTGAGACGCGCGAGCTC 41638 29 100.0 32 ............................. GGGAGGACGGGAAAAGGCTTGTGGGCGGGAAA 41577 29 100.0 31 ............................. AGCTACGGGACTGGTGGGAGGTGATGGAAGA 41517 29 100.0 32 ............................. GGCCCCGTTCACAGCGTGCGCCGCGTCCTCCC 41456 29 100.0 32 ............................. GGAGCGTACAAACTCGGCCTCATTAGGGAAAC 41395 29 100.0 32 ............................. GCGAGACCTCAGTGTAGGTGTCCAGTCGTTGA 41334 29 100.0 33 ............................. ACAACCCCAACCCAGAGCATCTCGGAGGTAAGC 41272 29 100.0 32 ............................. GTCATGGCGGCGGGGAGGACGATGGTGTGGGT 41211 29 100.0 33 ............................. GCCGCCCTGTGGTTCCGCTACGGCTCCGGGCGG 41149 29 100.0 32 ............................. TAGAGCTCCTCCAGGGTCTTGGGGCGGTCCCT 41088 29 96.6 160 ............................T GGGTGGTAGGATGAAGGCAAACCCACCGGGCTGGGCCTGGGTTCCCGATAGCCCGGTGCAGGACGCGCGGCCCTCCAGGGGGCCGTTGCCCTTTTATGGCGGAGGAACTCCACCCTTCTGGTCCTGCAAATAAGCGCAGTTCCTGGTCTCTATGGGGGTC 40899 28 75.9 0 .....G...T.GCA..-.....C...... | ========== ====== ====== ====== ============================= ================================================================================================================================================================ ================== 23 29 98.7 38 GTAGTCCCCACATGCGTGGGGATGGACCG # Left flank : GCATGCGGGCGAGTTTGTCCAGGGCCAGGCGGTACTGGCGCGTGGGGGCCTGGTGGTAGAGAAGCCTTCCCGCGGCGAAGAGGGCCAGGGCCTCTATCGGGTGGAGGGAAGGAGAGCGGTCGGCGATGCGGTAAAGCCCCCGGGCCAAGCGCTCCACGGGAAAGCCAAGGTCAAGAAGGGCCTCGAGGTCCCGCTCCACCGTGCGCTCGCTCACGCCGAAGCGGCGGGCGAGTTCCCCCACCCGCATGGGCCTGAGCTTCAAGGCCTCGGCCATCTGCAGGAGGCGGGCGCTCTTGGCCTCTTGTCCCATGCATGTATGCTAAGCAAGCCCTCCGGGCCAGGGTGTGATTTTTGACCATGCTATACTTGGACCAGCGCCCACCCTGACCTTTTCCCCTCCCCCGCTCGGGCGCTGGGGAACTTGACAGAAAAACCTGCAATCCTTCCCAAATAGACACATAAAGGGGGGTGAGCGGGCATTTTTGCCGTCCTGGTCATGT # Right flank : GACACCCCTGGCGGCAACTCTTCCGTCCGACGGAAGCTTCCCCGGGCCGTAGACTGCCCTCATGAAGCGAAACGCTTGGGAGGTGTACGGCGAGGTTCTTAAGACGGCCCGGGAGCTTGGCCTCGAGGGGGAGGAGCAAGAGGTGGCCAAGGCCCTCCTCGCCTGGCCCAAGGAGCGCTTCCACGCCTTCGCCGCCCGGTTGGGCCTGAAGGCGAAGTACCTGCGGCACGACCTTCTCCCCATTGCCTTCCTCCCCGAGCCCCTGCGGGAGGCGCTCCAAGGGGGGCTTCCCCTCCGGGAGGCCCACAGGCTCCACCGGCTCCTAAAGCGCGGGGAGCTTTCCCTCCAGGACCTAACGGGCAAGGACCCCAAGGCCCTCATGGCCCTTCCGGCCAGGCCTGGGGAGGTGGACCCTCGCCTTCCCGTCTGGTTCTTCCCCCCCGAGCCCTGGGAGGAAGCCCTCCCCCTGGCGGTGGCCCAGGCCTTGGTCCGGCTTTACA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.52, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACATGCGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 52134-53574 **** Predicted by CRISPRDetect 2.4 *** >NC_017588.1 Thermus thermophilus JL-18 plasmid pTTJL1801, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 52134 29 100.0 32 ............................. ACGACAGGCGACTACGTGGTGGAGGACGTGGT 52195 29 100.0 32 ............................. GCTAGGGGTGTCCTGGCGCTCTGTGAAGCAAC 52256 29 100.0 32 ............................. GGGTGTGCGGTGTGCGGCGCTAAGGCTACGAA 52317 29 100.0 33 ............................. TACCGGGTAGCCCTGGACCTGCACCTCCGCTCC 52379 29 100.0 32 ............................. TACCGGCCTCGCCACCGAGGATGGCGCGTATA 52440 29 96.6 32 ............................A GGGCGGGGGCCCCGGGGGAGGGTAGGGGCAGT 52501 29 100.0 32 ............................. CAGCGTAGGCCCGAGCGGACGTGAAGCGCCTC 52562 29 100.0 32 ............................. AGGTATTCCGGTACCACCACCTTTTCCACCGG 52623 29 100.0 32 ............................. CGGACAGGCTCACGGCCGCTTCCCGGGCAATC 52684 29 100.0 32 ............................. TATCGTATTGACAAGGCCATGATGGAGTCCCT 52745 29 100.0 34 ............................. CTCCGCAGGGCCACCGAGGGCACCGCCCCCGCCC 52808 29 100.0 32 ............................. GACCCCCAACGGCTCCGGGCTCTGGCCGAGCG 52869 29 100.0 33 ............................. GCAACCCCAGGGTTCAGGGGTTCAGTCGCCCAC 52931 29 96.6 32 ............................C AGGGTGGCGAGGACGCGGGGGCCGTAGGAGCC 52992 29 100.0 33 ............................. CTTCTCCCGCTTGGACTGAACCTGCTTCTCCAC 53054 29 96.6 32 ............................A CCTTGCCCCGCTTCTTGCGCATCTCGCACCTC 53115 29 100.0 34 ............................. GTCGTCCACTACCGCGCTTCCGTGAGCGGCGTGA 53178 29 100.0 33 ............................. ACTGACCGGGTTGATGCTCGCCTTATTGCCCGC 53240 29 100.0 32 ............................. CTGGGCAAAACTCTACCCTGCCCCCGGTGCGG 53301 29 96.6 33 ............................A GTTCTGCCTTCACGCTCACCGCTTGCCTCCTTC 53363 29 100.0 32 ............................. CGTCCCAAGTCAGTCCTCATCATCGTTACCTC 53424 29 100.0 32 ............................. AACCTTTCCGCCCCGGCAGACGCGAACCTGGT 53485 29 100.0 32 ............................. TCGGCCACGCCGTCGGAAACCCGACTGATGGA 53546 29 89.7 0 .............AC.............T | ========== ====== ====== ====== ============================= ================================== ================== 24 29 99.0 32 GTAGTCCCCACGCGTGTGGGGATGGACCG # Left flank : AGACCCCACCCGTCCTGGGGGCCTATGGGACCTCGAGGGCGAGGTGGAGGGCGGGGTGGCCTATGGTGGTGATGATCCTGGAGAAGGTGCCGAGGAGCCTGAGGGGTGATCTTACCCGTTTTCTGATAGAGGTGGACACCGGGGTCTTCGTGGGCCGGATCAGCGCCACGGTGCGGGAGCTCCTTTGGGAGCGGGCCGTGGAGAAGGCTGAGGGCGGCAGGGTGGCCCTCGCCTACCGTACGAACAACGAGCAGGGTTTCGCCTTGCGACTTCACGGCTACCCGGACCGCTTCCTGCGGGACTTTGATGGTATAGTGCTGGTGAGCGTTCGGAACGCCGAGGCGGTGCGGAAGGCGGAGAAGCTGTCCAGGCAGGTTGAGAGGTACAAAAAACGCCTTGCCAAGGGTTCCGAAGGGGATCTTGAAAGCCAAAGTCCGTAACTACTCCCGAATAGACACATAAACGGGGGTGAGCGGGCGTTTTTGCCGTCCTGGTCATGT # Right flank : TGGGTGGAAAGCCCTCTCAGGCCACCGCCCACCACGGGGCGGCCACCACCCGGTCCACCAGGGGGAAGACCTCTTCCCCCCCGTGGAGGAGGAGACCGCCCGGGGCCTCGGGGTACTCCGCCAGGAAGGCCAGAAGCCCATGGGCGTCCTTCGGGGTGGGCCTGGAGGTGGCCTTCACCTCCACGGGAAGAAGCGTTTCCCCCGCTTCCAGCACGAAGTCCACCTCCTGGCCCGAGGCGGTGCGCCAGTAGTAGAGGCCCGGGGGGTTCTTCTGGGCGTCCCGGAAGGCCAGGAGGTCCAGGAGGACCAGGGTCTCCAGGTGAGCTCCCGAGGGCCTTCCCCCGGCCAGGTAGAGGGCCAGGGCGGGGTCGGGGAGGTAGACCTTGGGGGACTTGACCAGGCGCTTGGTGCGGCTACGGGCGTATCCCCTCAGACGCACCAGGAGAAAGCTCACCTCGAGGAGGTTCAGGTAGCGGTGCACCGTGGGCTGGGAAATTCCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCGTGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 78230-77686 **** Predicted by CRISPRDetect 2.4 *** >NC_017588.1 Thermus thermophilus JL-18 plasmid pTTJL1801, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 78229 36 100.0 35 .................................... CGTTTGCGGGAGTTGGAGCGGGAGCGGGAGCGCCT 78158 36 100.0 36 .................................... CCTTTTTTCCACCCGGCGCTCGGCGGCCTCTTTGCG 78086 36 100.0 34 .................................... AGCTGGTCCAGGAGGCTCCCCAGGGCCCCTTTGA 78016 36 100.0 40 .................................... TAAGAAGGTAAAGGGGGCCATACGAACTAATCTCCCCACG 77940 36 100.0 35 .................................... CTGGACTAGGGCGGTGTACCCCGCCCCGACATAGC 77869 36 100.0 39 .................................... GCCATCACCCTAGGCCGGGTGGCGCACGCCCGCCACCAC 77794 36 100.0 37 .................................... AGGGTAGACAGTGCGTTTGACGTTTGGGTGCCCGTAG 77721 36 75.0 0 ...........................CCCCCCTTT | ========== ====== ====== ====== ==================================== ======================================== ================== 8 36 96.9 37 GTTGCAAACCTCGTTAGCCTCGTAGAGGATTGAAAC # Left flank : GCCTACGATACCCCCGATGACCGTCGCCGGGCGCGGCTTGCCAAGCTGCTCAAGGGCTTTGGCGAAAGGCGGCAGTACTCCGTGTTTGAAGCCCGGTTGACCCGGGAGCAGTGGGCCCACCTCAAGGGCAAGCTGGAAGCCCTGGTCAACAAGGAGGAGGACGTTTTAGCGGTGTACTTCTTGCCCCCGGAGGCGGTGGGACGCACCTGGCGCATCGGCCACGAGGGGTTGAAGCGCCTCGAGGACCCCGACTTCGTCTAGCGAGCGCGAAGGCCACCTTATGCAAACCCCCTGTGCCAAACCGGGGGTTTTTGCTGTACAGAAGGCTGTTCTTTTGAATTGCATACTTGTTCTTTCCCCTCGTGCGCGTGCGCACTCGTCCTGGAGAAGGAAAGTCCCACTTTAGTCCCACGGCTTCTCTTCCAGGTTGACGCATAATCCCCCCGCGTGCGAAAATGGCCTCAAGACCCCCCGCCTGGAGCCGCTTCCTGGAGGGGGCC # Right flank : CGGTTATTCACTCCGAGGCCCTTCACGCTGCCACCCTGGCCACCCAGGTGGGAGGCAAGCCCTCCCGGGCTAGAACTTGGGCCACAAAGGAAAAGGCCGTCACCACCGCCGTCACCTGCCGACTAACCGCCTTAAGGCCCCGCACCCGTCGCAAACAAGCTGCCAAACCTAAGGAGCCCTTCAACAAACCAAACACCGTCTCCACCTCCCACCTCCGCCGGTACAACCGACGGTAGGCCCCACGCTGAAGCCGCCTCAAGTTCTCCCCCCTCCTTCTCCCCCTCGGCTTCCCCCGCCTCCGGTTGTGCCCAGAAAGGAGCAAAAGCCCCTTCTCCTCTGCAGCCTGAAAAAGCCCCTCGGCATCGTAGGCAGAATCCCCAAGGAGCAGGGAGGGCTTTTCCCCTTCCCAAGAGGCTATCCCCCGCACAAGAGCCCAGCCCACCGGACCATCGTGCCGGTTAGCCGGGGTCACGGAGAGGGCCAGGATCTCCCCCGTGTCC # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAACCTCGTTAGCCTCGTAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 4 89345-91189 **** Predicted by CRISPRDetect 2.4 *** >NC_017588.1 Thermus thermophilus JL-18 plasmid pTTJL1801, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 89345 36 100.0 35 .................................... TTGCCCTCCCGGGCGTCCTCCCCCAGGTCCCGCCA 89416 36 100.0 36 .................................... AGCCATAGCTCGTGGCTCACCGCGGCGATAGCCTCA 89488 36 100.0 37 .................................... GGGGGAAGTCGGACACGCAATGCCCCGCCGAGATGAA 89561 36 100.0 35 .................................... TTGGGGGCCTCCTCAGCCTCCAGGAGGCTCAATAG 89632 36 100.0 35 .................................... AGGGTATAGCCTACGCTTATCATGTCAACCTACAC 89703 36 100.0 36 .................................... TTTGTATAGACCCCAGGAACGACCTGGGCGGATATC 89775 36 100.0 38 .................................... CCCCATGCCTAAAATCCTCTCCCTAGTTCTGGGCCAAG 89849 36 100.0 37 .................................... CCGGGGCGGGCGGGCATGGGCGGCCACCCTCAAGGGC 89922 36 100.0 39 .................................... TGTGGGGTGGGGGATGGGACCCCGGCCCGTGGGCCTTTC 89997 36 100.0 38 .................................... TTAGATGTTGTCTACGCCCCCGTCATGGATGAGCCTGG 90071 36 100.0 36 .................................... GCGAGGGGCCTGGGCCAAGGACGGCGAAGTTCGTGC 90143 36 100.0 36 .................................... AAATGCTTGCGGGCCCTGACAGGTTTGCGCTCGGGG 90215 36 100.0 37 .................................... TGGGGTTCTCCTTCCGTGCCCCTCCCTTCCGATTCTT 90288 36 100.0 37 .................................... GATAGCGAGGTGTTCAGGATGGCTTTCTACCGCCAGC 90361 36 100.0 36 .................................... CCGTCCGCGTCTACCGCCACGGAGATCTCCGGGACG 90433 36 100.0 36 .................................... CTCCTGGACGGCCCGCATGGGGTGCAGGCCCTCCGC 90505 36 100.0 36 .................................... GTCCCGGCGAGCGCCCAGGGGGAGAGGCGGGCCACG 90577 36 100.0 35 .................................... CATCACCCGAAGCTCCCCGATGGCCCGTTCCAGGA 90648 36 100.0 36 .................................... CTCTCCCGTGGAGCTGGAGGCCATAGCCTACGCTCT 90720 36 100.0 36 .................................... GTGGAGCGCGGCGCCCACGGCCTCGGGCGGGGGAGG 90792 36 100.0 35 .................................... ATAATCCCGCCCCCCCTGCACTTAGCGCATGCCTC 90863 36 100.0 37 .................................... GACTCGAGCCCCCTCGCCGCCCCCTACTACGCGGAGG 90936 36 100.0 37 .................................... CCTGGTCCAGCAGGGGCACGAGGCCGAGCTCCTGGGG 91009 36 100.0 36 .................................... TTCAGGGGGAGGGCGGCGAGGCGCAGGTCGAGGAGC 91081 36 100.0 37 .................................... TCCCGCGCCTCCAAGGCGGCCTTCGCGAGGGGAAGCA 91154 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 26 36 100.0 36 GTTGCAAACCTCGTTAGCCTCGTAGAGGATTGAAAC # Left flank : CCTTACAACCCAAAGGAAGAGGCCGCCTTGCGGGAGCTTTTTGAGTTGGACCTCGAGGTGGCAGGCTTCCGCAACCTGCGTTTCCACCGGGTACAGGCGGGAAAGAGCTTTTTCCCGGGCTTCACAGGTGAGATGACCCTGAGGCTTTGGAGCCAGAGCCTCGAGGCCCAGGGGGCCCTGGGGCGCCTCCACGCCCTAGCCTTCTTCAGCGGCGTGGGGGCTAAGACCCCCTACGGCATGGGCCTGGCAGTCCCCCTCTAGCGAGCGCGAAGGTCACCTTATGCAAACCCCCTGTGCCAAACCGGGGGTTTTTGCTGTACAGAAGGCTGTTCTTTTGAATTGCATACTTGTTCTTTCCCCTCGTGCGCGTGCGCACTCGTCCTGGAGAAGGAAAGTCCCACTTTAGTCCCACGGCTTCTCTTCCAGGTTGACGCATAATCCCCCCGCGTGCGAAAATGGCCTCAAGACCCCCCGCCTGGAGCCGCTTCCTGGAGGGGGCC # Right flank : CCCGAGATAAAAGCCGGTCGTGTAAGGATTTATGTGTAAGGGTCCGTGTTTAATAGGGGGGCACACCTTAGCACGAGGAGGTGCCCCGTGGACCAGGATACCTTGCGAATCGTGCTGAGGGAAGCGGTGCGGGAGACGGTGGCCGAGGTTCTGCAGACGGTTCTGGAGCTGGACCGGACAGCCTTCTTGCAGGTGCACGGGGGGCGCAGGAACGGCTACTACCCCCGCAAGCTGGAGACCACCTTCGGCCAGGTGGACCTGAAGGTCCCTAGGGATCGGGAATCTCGGTATTACCCGGCTTTCCTTAAGCCCTACGCCCGCCGCCTGGTGGACGTGGGGGAAGTAGCTGTGGCCTTGTACGCCGCCGGGGTCAGTCAGCGCAAGGCGGCCGAGATATTGAGCCTGCTCTTAGGCCACCGCTACTCCCACGAGACCCTGAGCGCTCTGACCGACCAAGTCCTGGAGGCGGCAGGAGCCTTCCGCACCCGGCCTTTGCCCCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAACCTCGTTAGCCTCGTAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.50,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 5 95113-96519 **** Predicted by CRISPRDetect 2.4 *** >NC_017588.1 Thermus thermophilus JL-18 plasmid pTTJL1801, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 95113 36 100.0 35 .................................... CCGGACCCGGTCCAGTATCTGGCCCAACCTCTCCA 95184 36 100.0 36 .................................... CGGGTCCTGGACTGGGGGCGGCGGGGCGGGGACTGG 95256 36 100.0 37 .................................... TGGCAGAGCATGGAAGTACGTGGCACTGGGGGGCCAA 95329 36 100.0 35 .................................... CAGTAGGCGAGGACCTTCTGCCTGGCCTCCTCCTC 95400 36 100.0 38 .................................... ACCTATGAGCGCCCAGAGCCAGAGTGAGCACCGCATCT 95474 36 100.0 34 .................................... TCGAATCATGGCCGCCTCGTCCACGATGGCCAAG 95544 36 100.0 37 .................................... CAGCATGAGCGCCACCCCCAACGCCAGGAGGAGGGCT 95617 36 100.0 37 .................................... CCCGGGCGGGGCGGCCGGCCGCCCCGCCCTTTTATTG 95690 36 100.0 36 .................................... CTTGCCCCGCCTGTGCCCCATCCCGCCTCCACCACG 95762 36 100.0 36 .................................... CTCGGGCGGGGCCTCGCCCCGGCGCTGGCGGAACTC 95834 36 100.0 37 .................................... CTTCCCCGTGGCCGATGGGCTGCTGGACGCAGGGTTT 95907 36 100.0 35 .................................... ACCTCGTCATAAGCGGCGTGGTAGACTTTGACCAA 95978 36 100.0 37 .................................... TCCCTCATCGCCCAGGATGTGCGGGCCGCCGAGTGGA 96051 36 100.0 36 .................................... GCCGGGGGCTAGGCCGCAGAACCACTACCCCCACGC 96123 36 100.0 37 .................................... TCCAGGACGGCGCTCCACCGCCGGACCACCCTAGCCC 96196 36 100.0 37 .................................... AGCTCTATGAGGAGGGCCCCGTGCCGCTCCGTGGTCC 96269 36 100.0 35 .................................... GCGCGTGGGCGGGTGGCCGCGCGGCGTGCCGGGTG 96340 36 100.0 35 .................................... TTTCTGGCCGGGGCGCTGGTGCGGCCGCCGGAGCT 96411 36 100.0 37 .................................... CTGGGAGCCCCACCTGGAGGGCACTACCCTCCACCTC 96484 36 97.2 0 .................................T.. | ========== ====== ====== ====== ==================================== ====================================== ================== 20 36 99.9 36 GTTGCAAACCTCGTTAGCCTCGTAGAGGATTGAAAC # Left flank : GGGGTCCGTGGCCTGAGCAGGCAGGGCGGTGGCGTCTAAGGCCAGGACCCTTCTTTTGGTCTTCTCCCCCCCTTGCCTTTGCCAAAGGGCCTGCCAGGGGAGGTGTTTACTCCGCTCGCTTACCGTGGCCCGGCTGGGAACGCCGGGCAGGCCCAGGGCCCGGCACAGGGAGGGATCTCGTCGGAGTTCCCGTAGCATGCGTTCCACGGACCAGCCCATAAAGGCGCGGTAGACGTGGATGCGTAGGAGATGGGTGTGGGTGTAGGTTCTGGGGCGACCGGGTTTGGGGCCAGGTTCTGGGACCTGGAGGGAGCGGATCAGTGTGCGCAGTTGCCACTCGGGGAGTTCTGGTAAGCTGGGAGGGGGCTTGGGTGTTCCCACACATTTATCCAAGCCCCTTCCTTATTGGCGTGTCAATGCATATGCAGGTGAATATCCGAAAGGGGGGTCGTAGAGGATTGAAACATAGGATGGCGAGCTAAATGGGCATCGGGGGATGC # Right flank : CTGTCTTGCCTGTCAAGCCACCCCTTGGGCTGGCTGACCGGCGTAGTACTCCCTGAGCCTGCCCATCATCCGCCTGAGGAGCTTGTGGGCCACGGCCACCAACGCCTGCTTCTTTCTCTTTCCCCGCGAGAGCAGGCGGTGGTAGAAGGCCCGCATCTCCGGGTCATGGCGCACTGCCACCAGGGCGCCCATGTAGAGCTTTCGCCGCAGGAGGGGGGGTCCTTTCTTGGAGAGCCGACTCCTCTCCACGCTCTTTCCCGACTCCTCCCGCTCGGGGATCAGCCCCGCGTAGGAGGCCGCCCTCTTTGCCCGGCCCCAGAGCTCTGGGGGCAGGAGGGCCAGCACCGCTGCCGCCGCCAGGTAACCCCATCACGGGGTCCAGAAGCGGAGGGCGGGAAAGGCCCCCAGGTCCCGGTAGTTCAGCGTCCAAACGGGCGCCCCAAGCCGCAGGGCGAGGAGGGCCACGCCCGCGTCCTCCAGGGTGCCCCCCCATCCGGGCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAACCTCGTTAGCCTCGTAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.50,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //