Array 1 73757-71477 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKGJ01000023.1 Lacticaseibacillus paracasei strain FAM6161 FAM6161_scaffold_0023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 73756 36 100.0 30 .................................... TTCTGTAAGTTCTTTCCAATTGCGCTTTGG 73690 36 100.0 30 .................................... TGACAACCCAGAAGGTATATATCCATTTGT 73624 36 100.0 30 .................................... TGTTCATCATTCTGCAGCTTGATGAAGCCA 73558 36 100.0 30 .................................... TCCAATGCAGTATTGGTTACAGCTATTATT 73492 36 100.0 30 .................................... AGCGTGGCGTAGCGCTAACTTGTCATTTTT 73426 36 100.0 30 .................................... AAAAATTGGGGATTGGCAAGATTACGACTG 73360 36 100.0 30 .................................... TATTTCGCACTTCCAAAATCATAGCCATCA 73294 36 100.0 30 .................................... CGCCTGAACATTGCATCGATGGTTTGATCA 73228 36 100.0 30 .................................... GTTGGTGGCAGCGATTCATTGCTGACGTCC 73162 36 100.0 30 .................................... AAAGCGTTCGCTTTGATATATCAAAATTAG 73096 36 100.0 30 .................................... TCAAGATAGACCCCGTTAAATTGGGTGAAT 73030 36 100.0 30 .................................... AACAATTGAAGCGGTGGAAGCTATAGCCGC 72964 36 100.0 30 .................................... ACGTCGCCGCGAATTTTCCGCATTACCGTA 72898 36 100.0 30 .................................... TCGACAATTGTGACACGGGTTTCAACGTCA 72832 36 100.0 30 .................................... AACGGTGCTGCCAACTGGGTGCTCGCGCGC 72766 36 100.0 30 .................................... TTGAGTTCTGATTGTTAGTTGTATCTTGGT 72700 36 100.0 30 .................................... CTTCATCTAATGATGAATTAACTAACAAGT 72634 36 100.0 30 .................................... GCAATTTAATTTATAACCCAAGTTTATCAC 72568 36 100.0 30 .................................... GAGTTTTAAGGTGATCAGAATGTATCGAGA 72502 36 100.0 30 .................................... AATTCTTGACCCCATGATTGAGACGTATCT 72436 36 100.0 30 .................................... TTCGTTGATGAGATGATCGAGCATAAACAA 72370 36 100.0 30 .................................... CAATGCCGGGGGTCCAACCATAGCCTGTGT 72304 36 100.0 30 .................................... AACGGTGCTGCCAACTGGGTGCTCGCGCGC 72238 36 100.0 30 .................................... TTGAGTTCTGATTGTTAGTTGTATCTTGGT 72172 36 100.0 30 .................................... GCAATTTAATTTATAACCCAAGTTTATCAC 72106 36 100.0 30 .................................... AAGGTGAGCAAATCTTTGATGTTAGTCAGC 72040 36 100.0 30 .................................... ATCTCACTGATGTTATCGGCGATTTACGAG 71974 36 100.0 30 .................................... CATATTGACGTTGTGAACGTTGCATTTCTG 71908 36 100.0 30 .................................... CTTACGTCAACGGTTATACCGTGCGCAAGG 71842 36 100.0 30 .................................... AAGGGTTAGCGCCACTTAATCCTGACAACT 71776 36 97.2 30 ................................A... AAAGGCTTACGTTCAGGCGATTGAATCCGG 71710 36 100.0 30 .................................... ACCCAGTTTCCTCGTTGCGCAGATGTTTGT 71644 36 100.0 30 .................................... CCGAGAAGGTCGGACGATCAACTACTTTCG 71578 36 100.0 30 .................................... AGGAAATTCGAGTTCTTCCCGCAATTGATG 71512 36 83.3 0 C.............C..............G..TTC. | ========== ====== ====== ====== ==================================== ============================== ================== 35 36 99.4 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATGTATTTACTTCAAGATCCATTTTTGAGCGACTTGCCAGTCACGGTTGAACCAGGTGGTAAGCTTGAACAAATCATGAAATACTGCAACGTTCATTTTGATGAGGCTGTCACGACAGAGTCAATCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAATTGGAGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCCAGAGATTTCTTTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTCATTCTCATCGAGTTCTCAAAAGTGAACCGAAAGAAATACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGATAGTCGTGAACTAGATTGATTAGGAGATTGTGTGAAAACAACG # Right flank : AAACAGCAGTGAGACTAAACTGAAGCTAAACTTGTCAAAAAGTGCCTCATTTTGTGACAAAATAAGGTGTTTCACTATTTATTGTGTGAACCAAGCCTCAATATTTACAAAGCTGAACCTTTCAACGTTCAGCTTAAAAGCCGCCGTCTAAAGCAATATCGTAGTAACCACATACACTCATGCGGTGATATATCAATCAAAAACTAAGTGCTATCTAACTCCTCTTGTGATAGAATTCATTATATATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGCGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGATCGAGCTCTAGTTCGAGCAAGAGCAGCAGCACGACTAGCCAGACGAGCAATGCTAAGGTGAAGATTAATACCGGCGCCGATGCGAGTGCCAAGGTGCCGGCAGCCGGCACCTTAGTGATGCGTCAGCTTTATGCTGCACCACACGGCAAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //