Array 1 3259-1555 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAWWM010000002.1 Bifidobacterium dentium strain UT_Austin_Bifido_FMT_C1 contig_02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3258 36 100.0 28 .................................... TTGCCTCGGCGGAGCCATTGGCTTATGA 3194 36 100.0 28 .................................... ACTTCGACGGATTCAACGAGTACGCTTT 3130 36 100.0 28 .................................... GCATCGGAGGATCACCGGCTACACCGCC 3066 36 100.0 28 .................................... CCTGCCGTGAGTCGAAGTGATCCGGCAG 3002 36 100.0 28 .................................... TAATGTACGCTCGCCAAGCCATATCCGA 2938 36 100.0 28 .................................... ATCTAACCGCGTGGGCGCTACTATTCCC 2874 36 100.0 28 .................................... GTTGACAAGGCTCACGACACGTCGAATC 2810 36 100.0 28 .................................... TGCACGATCTGCGGCATACTGCGGCTTC 2746 36 100.0 28 .................................... CGTGGGATGGCGTCGTGGTTTTCAACCA 2682 36 100.0 28 .................................... TGATGCACGTCGTGCCGCTCTCGGCAGT 2618 36 100.0 29 .................................... ATGAATAGGTGCGACCGTCCTGCTCAAAA 2553 36 100.0 28 .................................... CGTCAAACATTTGACGAAAGGGGTATGT 2489 36 97.2 28 ..G................................. CTGTTCTTGCTTGGCATTGCCCTGCTCG 2425 36 100.0 28 .................................... TCAAGTCATGCAGTATCCACTCGGTCTC 2361 36 100.0 28 .................................... TGGTCGGGCAGCGTTCGGCGTCGCAGGA 2297 36 100.0 30 .................................... TGCATTCCACGCACACCTTATGCCCCCAGA 2231 36 97.2 28 ........C........................... GGAGCCAACCTATGCCGTGCAACGTGAC 2167 36 97.2 28 ........C........................... GCAGAATATGACGGTCATCACCGAGGCT 2103 36 97.2 28 ........C........................... CGATCCACGAGGATGTTCGCCGCCATGT 2039 36 97.2 28 ........C........................... AAGTTACCTACGGGTGGCGGTTCAAATG 1975 36 97.2 28 ........C........................... ACTCCTATTGTTGAAGGAGGCCGCGCAG 1911 36 97.2 28 ........C........................... GATTGTTGCTGTCCTGACCGAATGTGAT 1847 36 97.2 28 ........C........................... ATGGAATCCATGGATACGCCTTGACGAT 1783 36 97.2 28 ........C........................... TCAAAAACCTCTCTGGTGGTCAGAATTG 1719 36 97.2 28 ........C........................... GCTGTGACAGTGTTGTGACAGTGTTGTG 1655 36 97.2 29 ........C........................... TGACGTGCATGTGGTGGTTTCCGACTTGG 1590 36 97.2 0 ........C........................... | ========== ====== ====== ====== ==================================== ============================== ================== 27 36 98.8 28 CAAGTTTATCAAGAAGGGTAGAAGCTAATTCCCAGT # Left flank : AGTTCGACTCATCTGGCCTGACGATACCAAGTTCAATAAGCGATTTCGCACAACAATTTGGCTTGTATTGCGAGAAGAAGATCGATGCATTGGAAGTGCCAGAATATCGAGGCCCTTATGAAAAAGGATGAGGACAGTGATGGCATGTGGTGTCTGGTGATGTTCGATCTGCCGGTGAAAACGAGACGGCAACGACGAGAGGCGACAGAGTTCAGAAACATGCTTTTAGACATGGGCTACAGCATGGTGCAGTATTCCGTATACGCAAGATATACGCCGACCCAATCAGGCAATAGATCGACGGTGATCGCAATAAAAGAGAATCTTCCTCCTGATGGTATTGTTCGAATTCTCCATGTCAGCGATCATCAATGGTCGACCGCATTGCGTTTTTCCAGTTCTAAACAGGTGGAGGCTAATGAAACGCCGGACTATTTCACACTTTTTTGAACAGAAGAACCTAATTAAAAGGCGGAGAATGGCCCTTCTTGACAAACATA # Right flank : ATGAATATGCGTCATCGTTCGGAAGGATGCGAGCACGATGAGGTTCATTCGACGCGAAGTGATATTACGGAAAAGAGGTTTCGGCTCACGATGCATACAGGTTCCGAATGTTTGATCATCGGCGCGCCCAAGCACGGCCATCTTGATTTCACCTATGGCCTGACGCAGGCCGGCAGAGAAGCGTTGATGCTGTCCGATTCCTGCGTGATGAAACTGTTCGACGTTTTCATTGGAGTATTGGACGAAGACGAAGGCTTGGAAAAGTCATGTCGGGGCAGGAAAGGCGTCTGAACAACCTCCGGAAGGTGCGGATAGACAATCCTTAAACAAAAGAAAATCCTGCAACCGCTGTGGAAGCCCTTTGGCTAACAGTCGTCTCGCAGGCACGATCGTCGGCATCTTCAAGGGACTGTTCGGCTGACCCAAGCGGAATATGAAGACGGATGAGTGACTTCAATGGCGACTTCATCGTGAAGTCGCCATGTTTATTGCCGGCCGTT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.90, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTTTATCAAGAAGGGTAGAAGCTAATTCCCAGT # Alternate repeat : CAAGTTTACCAAGAAGGGTAGAAGCTAATTCCCAGT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 144-3154 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAWWM010000003.1 Bifidobacterium dentium strain UT_Austin_Bifido_FMT_C1 contig_03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 144 36 100.0 35 .................................... GGTCTAACACTACCGCAAAAAGCAATGCAAGTCGT 215 36 100.0 36 .................................... AACCACCACCGCATACGGAAGCATCTTCGAAAACCA 287 36 100.0 34 .................................... TGTTTTGCATGATGGCTTTGATGATGCCGGTCAA 357 36 100.0 34 .................................... TGGACTCGTCCCACGAGCCCGGCGACATCGTCTT 427 36 100.0 38 .................................... CTTGCATACGTGTGGCTGATCTATCCTAGCTACATCCT 501 36 100.0 41 .................................... TGGCAATTGCGAAAGCACTTGATCTCACTGTTGCTGATCTT 578 36 100.0 38 .................................... CGTGGCGCTGACGTCGGTTATATCCCTATTATTTGCGC 652 36 100.0 38 .................................... GTCTTGGAACGGCGGCACTATTTCACGACTTTCTGCCA 726 36 100.0 38 .................................... GTCGCGCGCCTGCCAGCGGCTGCGTTCTCGATGAACCT 800 36 100.0 35 .................................... GGTGCGTGAAGGCAAGTATGGTACGGCTTCCGGTA 871 36 100.0 36 .................................... AGCGGTCGAATAGGTGCGTTGTTCCGCACCCGTCGT 943 36 100.0 35 .................................... TAGGGGTACGGCGAAGTGAGTTGGAGCGCTTACCT 1014 36 100.0 35 .................................... CTGTGTTTGGGGTGATGGTCGAGCGCATACAGGAC 1085 36 100.0 37 .................................... CGGAAGTATGGTACCATTCGCAGAACCGTCGCGACCA 1158 36 100.0 38 .................................... TAGACCACGGTACGTACCTGCTTGCTGAACACCGGCGT 1232 36 100.0 36 .................................... GACGGCCTGTATATGCAGGTCGAGCATGTGCAATAG 1304 36 100.0 39 .................................... ATCACCGCCGACGTGATAGTCCAGCCGAGCGATTGCGCG 1379 36 100.0 38 .................................... TATGGCGGTTCGAACAAAGGCTTGGCGTATCCGCTGTC 1453 36 100.0 35 .................................... CCTGCGGTGAAGCGGCCGATGCTGGTGCGGCTCGC 1524 36 100.0 40 .................................... GTGTGTCTGCAACTACACGTCGGCGTGGGTGTCGGAAAAC 1600 36 100.0 36 .................................... CATGGCGAGGATGCCGATTCTCGCGCCGAAGGGCCT 1672 36 100.0 34 .................................... CGTGGTCTTCCGCAAATCCGCTCCAGCCGAGCGT 1742 36 100.0 36 .................................... TTCTTCATATCGGTCCACGAGTGCGCCATGTTTTCC 1814 36 100.0 36 .................................... TTTCCAACCGCGCACGAATTGGTACACGTTTACGTC 1886 36 100.0 38 .................................... GATACCGAGTCCTCGAGCATGATTTGCCGCAATTCGAT 1960 36 100.0 37 .................................... AGCACCCGGTACGAAATGGTCACGCATCGCGCCTCAT 2033 36 100.0 36 .................................... CGGAAGAATACGACACCCTTTTCAGCGGCATGACCC 2105 36 100.0 37 .................................... TGGCGGTGCCGGTGGTGCCGTCGAGCTTGCGGAAACT 2178 36 100.0 36 .................................... GAGTCCCCGTTATGACATCGGCACGGTTTTCGACGT 2250 36 100.0 38 .................................... CCGCGTACGTCCTGCCGTAGGTTCGATTCCATCACCTC 2324 36 100.0 36 .................................... GCCGTGCACGAAAACAGTCTGCCGATCGACCTGCGT 2396 36 100.0 38 .................................... TGCGTACAGCCGTCGCCAATGAGGGCGGCCTAAATCAG 2470 36 100.0 37 .................................... ACGGTCAGCGAGCTCGCCGAACGATTGAGATCCGGCA 2543 36 100.0 35 .................................... AACGCATTCAAAATCTATCCTAATGCGCGATATTG 2614 36 100.0 36 .................................... CTCCGCCCGCTCCCGACGAAACTCCTCCTCATCCTG 2686 36 100.0 36 .................................... GGTCTGTGAGTAGCCCATGTTCGCGGTCTGACACCA 2758 36 100.0 35 .................................... CGGCCCGCGTATTTCTTGAATTCCGCGTCGTCCGC 2829 36 100.0 37 .................................... TCGCACTCTCGCAAGCAGGCGGACTCAAATCAATCGC 2902 36 100.0 36 .................................... AGGAGGAATAGATGGGCAAGATAACAGCTAAGAGAC 2974 36 100.0 37 .................................... ATGCCGGACACCGCGCTCTCGTAGTGACTCACATTCT 3047 36 100.0 36 .................................... CGTCGAACTACGCAAATACAATTCGTGGACCTTCCA 3119 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 42 36 100.0 37 ACCTCAATGAAGTCCTGAGTATTAGAGCTCAGGAAT # Left flank : CCACTCCCTGATGAGATAACCGAAAACGAGAGGAACCATCCGGATTACCGGTGACGGTGTCCATTTTGAACGCCGATGGTGTTCAGATTAACTGGTGACGACACGCGGATTTATTTGACGAAAGACAGCCATGATTTACCGCCA # Right flank : TAGTCTTAGTGTAGAGCGTTGTGGTGACATGTATCTCAAGCAATTATGCGAGCGATGTACTTCATACCCTATGAAAAATGCGAATCTGGGAACGCTGAATCCCACAGAAACGCCATTTTCCGCATGCGAGCGCTTGCCGCGCGTCTCAGAAGTGATTCACCTCTCGTGCGCATGCAAGACGAAACACTCTTTAGTTATCAAACAGCCCAGCCGTTTTGACTGAAATCAAATAATTGTGGGAATTTCTAAGTCTGCATATCCTCGATGCCCCAGAAAATCCAATCCCTCTTCCGTCTGCGCAATTGTCCCCAATGAGCAGAACACAACAGAATCGGTTCCATAGTCAATCTCTTTCTCAATCTTCATACGTACGTTGAGCATCATTGAGGGGCGCACTTGCAACAGAAAAACACTGTATTGCAGCCGTTCTCCATAATGCTGAAGAATCTTCGCTACATGACTGCGACGGTAATCATCGCTCACATCATATGCAACTAAAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTCAATGAAGTCCTGAGTATTAGAGCTCAGGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.40,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //