Array 1 296-1463 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV828909.1 Pseudomonas aeruginosa strain HMSC059F05 Scaffold141, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 296 28 100.0 32 ............................ GAGCACAGTCAGCGACTACCTATTACAAACAG 356 28 100.0 32 ............................ CAGGACCATGGTCACGCCTGGACCAATCTGGA 416 28 100.0 32 ............................ TGCCGATCGCGCCGGAAGCGGTGAGCCAGTTC 476 28 100.0 32 ............................ TCGGTGACGCTGGACTGGTCGAGGGGCGTAGA 536 28 100.0 32 ............................ ATATCCAACACCGGGACGGGAGTCCGATCCTA 596 28 100.0 32 ............................ AAAACGAGCCACGGGTGTCGGCCTTCGACTCA 656 28 100.0 32 ............................ GACCTCGTCGATCTTCTTGCCCAGGGCGAAAT 716 28 100.0 32 ............................ TCAAAGCGCGAACCATCCAACGGCAGTTCGCA 776 28 100.0 32 ............................ ATAAGGCTGTCGTCACAGCGCTGCATGGCTGA 836 28 100.0 32 ............................ TGGGCCGGCGCCTACGCGGCGCATCAGCCGGT 896 28 100.0 32 ............................ TCGGACAAAGACAGCCTCCGGTCATAGGGTAG 956 28 100.0 32 ............................ TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 1016 28 96.4 32 .............T.............. ATACTGACTCAGCCAGGGAAAAGTCACTTGGA 1076 28 96.4 32 .............T.............. AGCGTGCCATGGCGGCGGTAAGTCAAACCGTT 1136 28 96.4 32 .............T.............. TGGTCGAACAGATGGCGGTCCTCGGCCAACTG 1196 28 96.4 32 .............T.............. ACGTCGGAACGCAACTACCTGACCGCGTTGGT 1256 28 96.4 32 .............T.............. CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 1316 28 96.4 32 .............T.............. TCGGCGAGGCGATCGATCATGCGAATCAGCAA 1376 28 96.4 32 .............T.............. ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 1436 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================ ================== 20 28 98.6 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : GAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAGCGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATAACCGCAAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 294-1041 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV828932.1 Pseudomonas aeruginosa strain HMSC059F05 Scaffold229, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 294 28 100.0 32 ............................ AGAAGCGTCGGCCGTTGGCGAAGAACCAGTAC 354 28 100.0 32 ............................ CGTCTGCTTCGGGCGACGATGCGACTGCGCCC 414 28 100.0 32 ............................ TGACAGCCCGGCGTTCACCGAGCTGGCCAGCT 474 28 100.0 32 ............................ GTGGCGTTCAATTGTGATGTCGTGCTGCTGCC 534 28 100.0 32 ............................ TGTTGCGCGGCCAGCGCGGTGTTGACCTGCTC 594 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 654 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 714 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 774 28 100.0 32 ............................ GGCAATCGCCGCGTCGATATCTTCCGGGGTCA 834 28 100.0 32 ............................ CAAGGTCGTCACCAGTACTTCTTGGGGCGGGC 894 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 954 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 1014 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTTCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10676-9569 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV828932.1 Pseudomonas aeruginosa strain HMSC059F05 Scaffold229, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10675 28 100.0 32 ............................ TTCACGATCCGTAAGAAGGCGTCGAAGATTTT 10615 28 100.0 32 ............................ TATTCAAGAGCCGCTTCAAGCAGCGGCTTGCG 10555 28 100.0 32 ............................ ATGCAGGAAGGTCGCCGGTCGGTGCTCATCGA 10495 28 100.0 32 ............................ GATACAGCCTGGCGATGGGGAGCCAGGTGGAT 10435 28 100.0 32 ............................ TCGGGAAAGAGACCATGACCATCGGTGAAAAC 10375 28 100.0 32 ............................ ATCCGGGCCTGCGCAGATCACCCGGCCAGCTT 10315 28 100.0 32 ............................ AGGCACTGCAGGCCTACCGGCGTACCCTGCGC 10255 28 100.0 32 ............................ ACGTCAATGCAGAACTCGAACGTCGTGTGCAT 10195 28 100.0 32 ............................ ACCCAGTGAAATCAGTCCCCGCGCTCGTATCG 10135 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 10075 28 100.0 32 ............................ GAGATCATCCGGCGCAAGCGGGAACAGCTGCT 10015 28 100.0 32 ............................ TCACGACCTTCTCGAACGTTCCCAGGTACGTA 9955 28 100.0 32 ............................ AAGGTCAATTCCCAGGTGAAGCAACTGGTGGC 9895 28 100.0 32 ............................ GTAGCAGAGAAACTCAACAGCCCGACTGGACG 9835 28 100.0 33 ............................ GTAGGGATTGTGAGCGTCGAGGAGCGCCAGGGC 9774 28 100.0 32 ............................ TCGCATAATGGGCATTACGTGTAAATGCTCGC 9714 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 9655 27 92.9 32 .....................A..-... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 9596 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 19 28 98.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTAATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //