Array 1 2641757-2639574 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPBY01000002.1 Acinetobacter baumannii strain AR_0036 scaffold00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2641756 28 100.0 32 ............................ AATCCTATAAAATTTAAAAGTGTTGATTTTAT 2641696 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 2641636 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 2641576 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 2641516 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 2641456 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 2641396 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 2641336 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 2641276 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 2641216 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 2641156 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 2641096 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 2641036 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 2640976 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 2640916 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 2640856 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 2640796 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 2640736 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 2640676 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 2640616 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 2640556 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 2640496 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 2640436 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 2640376 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 2640316 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 2640256 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 2640196 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 2640136 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 2640076 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 2640016 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 2639956 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 2639896 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 2639836 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 2639776 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 2639721 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 2639661 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 2639600 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 37 28 98.5 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : GAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2646847-2651077 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPBY01000002.1 Acinetobacter baumannii strain AR_0036 scaffold00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2646847 29 86.2 31 ....G.......CC..............C ATTTCCCACCATGCGAACATGCGTGTAACCA 2646907 29 89.7 31 ....G.......CC............... AACGAGCATGGTTTAGATTTAAGAGATGGTA 2646967 29 89.7 31 ....G.......CC............... TTTGAACTTGTGCATTCTCAATGATTGTTTT 2647027 29 89.7 31 ....G.......CC............... TATTGTGAGCACCTTGATTGCTGTGCGCTGC 2647087 29 89.7 31 ....G.......CC............... ACAGCGGGAAACTTGAAAGTCATTGCGAAAT 2647147 29 89.7 31 ....G.......CC............... GATTGCCCCCTGAGGAAACTGTATAAAGTCC 2647207 29 86.2 31 ....G.......CC..............A AACACCAACTAAGCCATTCCCTATTCAAAAA 2647267 29 86.2 31 ....G.......CC..............A TGAACTTTTAATGGATGCATGCGCCGCCCAC 2647327 29 86.2 31 ....G.......CC..............A CGAACAACGATAATTTGGAATACACGCTCAT 2647387 29 89.7 31 ....G.......CC............... CAGGAGAAAGATCGTTCAAAAGCTCAAAACC 2647447 29 89.7 31 ....G.......CC............... GAAAGTTTTGATATCCACTCTGCTGTTTCAA 2647507 29 86.2 31 ....G.......CC..............A GATGGTAAGAAAATTATTGAGTCTGGAGACA 2647567 29 86.2 31 ....G.......CC..............C GACAGTCCAGTTGATCAGATCTTGATTAGAC 2647627 29 86.2 31 ....G.......CC..............A ATGACATGGTTCAACAATTAAATTCATCTCA 2647687 29 86.2 31 ....G.......CC..............G TTCTTTTCTGCAATATGTGCCATTAGGTATT 2647747 29 86.2 31 ....G.......CC..............A TTTTAGATGAAACAAAAGATAGCAGGATTAT 2647807 29 86.2 31 ....G.......CC..............A GACCAAGCGGATTGACCGTATTGATAAATAA 2647867 29 89.7 31 ....G.......CC............... TCTGCAATACAAATCACTGGATCAGCCAGGT 2647927 29 89.7 31 ....G.......CC............... GAGTCTTTGATTTCCCAAATATTACTTGAAA 2647987 29 86.2 33 ....G.......CC..............C CTGAAAAATTTCACTGTGTCCATTTCGTTATTA 2648049 29 89.7 31 ....G.......CC............... ATGTCTTTAAATTCTGAAAAAACACTTGTTC 2648109 29 86.2 31 ....G.......CC..............G AAAAAATTGAAAACTTTTTAGAAGTAAATGA 2648169 29 86.2 31 ....G.......CC..............G CCACACATGCCTAAAAACGCAAGTGCGCTCG 2648229 29 86.2 31 ....G.......CC..............A TTATCAGATAAGCCTTTTATGAATGATCGTT 2648289 29 86.2 31 ....G.......CC..............A TTAGCTATTAGCTTTTTGGCAACAACAACAG 2648349 29 86.2 31 ....G.......CC..............A GTTCATGAAAACAGCTTTAAAAAGAAAGCAC 2648409 29 89.7 31 ....G.......CC............... CCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 2648469 29 89.7 31 ....G.......CC............... CCAAGTGAATCGGCTCCTAATGCAAATGACC 2648529 29 89.7 31 ....G.......CC............... GAAAACCAATATGCTGCCTAATTGCCATAAG 2648589 29 86.2 31 ....A.......CC..............G ATCTGCGTCCATTTGTACTTGCTGCGGGTGC 2648649 29 96.6 31 ............................A TATACAGCACCGCTTAGTGCGACGCGGTCAT 2648709 29 96.6 31 ............................G CCCACAGGTTGAGCATCAACGGCCATCGAGA 2648769 29 96.6 31 ............................A TCATAGAGCTCACTTTGTCGTTGAGCCTGCA 2648829 29 96.6 31 ............................A GAAGGCCCGTAATTTAACTGTAAGCCGTGGT 2648889 29 100.0 31 ............................. CTTCCTGAGTTTTAATCCCATTTGCCTTACA 2648949 29 93.1 31 ......T.....................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 2649009 29 100.0 31 ............................. TCAGGGAATTATCGTGAAACTTTCATTGACT 2649069 29 100.0 31 ............................. GCACCAGCTGCTGGCTGGTTGAAATCTGCAA 2649129 29 96.6 31 ............................A GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 2649189 29 100.0 31 ............................. GTTTCAAAAGCTACACCATCAAAACCATTGC 2649249 29 100.0 31 ............................. ATTTAAGTAATAAGTTTAATAACGACCTAGT 2649309 29 96.6 31 ............................A ACACGTTCTCTATATCGCTGTTTGCGGTCAT 2649369 29 100.0 31 ............................. TCAGTTGGATATGCCTTTGATACCAAGAAAC 2649429 29 96.6 31 ............................G CCTGCAGACACGGATTTACGCAGCTGATCGA 2649489 29 96.6 31 .........................C... AACCAAACTATGTCATCGATCGGAGATTTCA 2649549 29 100.0 31 ............................. TAAAATAAATGCCTGTGGTTTTTTCTTAACT 2649609 29 96.6 31 ............................A GTTTCCGAAGTTGAATTACACTCGCCAAGTT 2649669 29 100.0 31 ............................. AACACAGTGATTTGATTACCTTGAGCAACCC 2649729 29 96.6 31 ............................A TCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 2649789 29 100.0 31 ............................. CATCCACCTTTGATGAAACGGATCCACGCAA 2649849 29 100.0 31 ............................. CTTGTGTGACGGCCTCCACTCCAGATCCCGC 2649909 29 100.0 31 ............................. TAAGCTTCAAAAATAGCCATTGATTATAAAA 2649969 29 100.0 31 ............................. GACAACTTTCCACGGCAATCAGGGCTTTCCA 2650029 29 100.0 31 ............................. AAAGATGCACGTGGCCTAATGCAAGTTATTC 2650089 29 100.0 31 ............................. TTAAAATTAGGTGCTGAGTTACCACGGCTCA 2650149 29 100.0 31 ............................. AAACCAAGAACTTGAAGATTTTGATGCTTAT 2650209 29 100.0 31 ............................. AAAAATAGTGTGTTAATTATTTATGATGAAA 2650269 29 96.6 31 ............................C GTATACATGCACATCAATACGATATCCCGAT 2650329 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 2650389 29 100.0 31 ............................. GCAGCTACTCGACATGTTGGTAGGGCAGATG 2650449 29 96.6 31 ............................C AGTCGGCTGGTGCTAATTGAATAAAATCGTT 2650509 29 96.6 31 ............................A GATTGAGGCGATTTTTATCGCGGACATTGCC 2650569 29 96.6 31 ............................C AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 2650629 29 100.0 31 ............................. CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 2650689 29 96.6 31 A............................ TATTATTAAACGGGAAAAGTATATTCTTGCT 2650749 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 2650809 29 96.6 31 ............................A TCATCAATAAGTTGGCCTTGATTTAAATAGT 2650869 29 96.6 31 ............................A GATACAAACGAGTTCGCATCTCGACCAGAAG 2650929 29 96.6 31 ............................A TTATCCAGATAAAACCATATCTACAAAGTGG 2650989 29 100.0 31 ............................. CAACCTGAACACAGACATACATGTTCTATTG 2651049 29 86.2 0 ...GC...................AT... | ========== ====== ====== ====== ============================= ================================= ================== 71 29 93.6 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTAC # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.33, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //