Array 1 91673-92359 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043233.1 Bacillus thuringiensis strain Bt-GS57 plasmid unnamed2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 91673 32 100.0 34 ................................ TATTGTTACACCTTTAGAGTATCCGAGTAAAAAA 91739 32 100.0 34 ................................ TGGGTGGCAATGTTTGCGTTATTAGTTCCGAGTG 91805 32 100.0 35 ................................ ACAATGGGAAAGTGTTAGGTTATGCACGTTTTAAA 91872 32 96.9 32 .......................A........ GAAGATAGTAGAAGAAATCAAAAAAAGTGTAT 91936 32 90.6 33 .........T.........T...A........ TTTGTTGCTCCAGTCGTTATGATCGTCTTTGCA 92001 32 93.8 33 .......T.T...................... TAGGAGTTATTAATGGCTTTAGATGTTAGACCA 92066 32 90.6 34 .........T.........T.A.......... TACCTCGGGTTTATATTTATCTGGAATGCCCATA 92132 32 93.8 33 ........CT...................... TTTGCAACTAGCTCAATTGTTTTTCCGTTTTCA 92197 32 96.9 34 ....................A........... TACCTCGGGTTTATATTTATCTGGAACGCTCATA 92263 32 90.6 33 .........T.A.......T............ ATAATATCACAATTTTGACAAAATTCAGTCATG 92328 32 90.6 0 A.T.................T........... | ========== ====== ====== ====== ================================ =================================== ================== 11 32 94.9 34 GTCGCACCTCATATAGGTGCGTGGATTGAAAT # Left flank : ATTGAAAATGGAGAAACAGAGAATTTATATCCAGGGATTAATAAACAAGGAATAAGAACATTTTACACGAAACATTCTACAGATGTTGAGAATGAGGTTGCTACTGCGATTCATGTGTACGTTGATGTATTAAAACAAATGAAGCGTGAAGGTGCTGAATTAGCAAGGAAGAAGTAGAACGATGTGATTAGAAGATTTAATAAATAAAATTCTTCATCATATTATAAAACTATACATTCTTGTTTATTAGTTAGCTAATAGCTATGAAAATAAAATTAAATATATCGGTGTACAAGAATGAATTGATTTAGAAAGTCCTTTGATTTTTTAGGTGCGAATGTATAGCAAACATGAAATTCCTAGTACATTCGCACCTAGAATTCTCATAATGTATGATGGGGATTTATGATTTTTATACAAAATACTTTAATAAATAAAAATATTTTTATATTTTTGAATAGAATTAACGTATTTGTGATTGATTTTGAGCACAAATCGGT # Right flank : TAGTTTAGTAGATACTCAACTAGAAGTATCTATATCTGCAGTATCTAATACAAAAGTAAACAGTATAAAATGGAGGGAGATTGAATGACCTACATTGCTCATATACGCGAGAGTGACAGTCAAGTACAAACAGTCGAAGAGCATTTATTAAGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATTGGTATAAAACATTTAGCTGGTTTAGCCGGTATGCTCCATGATATGGGGAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAAGGGGAGTGTTGACCATTCAACTGCAGGGGGGAAATTGTTATATCAATTATTCCATACAGAAAATATGATTCCTTACAAAGGGATAATATCTGAGATAGTGGGAAATGCTATTATTTCTCACCACGGATACCTTCAAGATTTTTTAAATCCAGATTTAGAATCGCCCTATTTAAATAGAGTGCGAGATAAGCAATT # Questionable array : NO Score: 8.46 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 99362-99788 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043233.1 Bacillus thuringiensis strain Bt-GS57 plasmid unnamed2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 99362 32 84.4 35 ....T....CT.G.....A............. CATTGGCGGTAGTTCATAAGTAACAACAAATGGAT 99429 31 93.8 34 ...........-G................... ATGATATTCAAAGAGCCTGAACAAGTGGAATCGA C [99438] 99495 32 100.0 35 ................................ ATAATTGAATATGAGCTGCCGCCGATGGAAGGGAC 99562 32 93.8 33 ...................T..A......... ATGGAAATGGAACGTTCTTACGGATCAAAAGAA 99627 32 96.9 33 ..............G................. ATGTAGCTGGTATTAATGCTTTGTGAAAAACAA 99692 32 96.9 33 ....................A........... TAAATTACTTGCTGCCTTATCTAGATTACTTTC 99757 32 68.8 0 ......T..CT.G......TA....G.A.G.C | ========== ====== ====== ====== ================================ =================================== ================== 7 32 90.7 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : ATCCGATTGACATTACTAGTATGCAGATTACGAAAAGTGTAATGTCTGAGCCTGGGAAAGATAAAGGTTCAGATACGATGGGGATGAAGCATGGTGTTGATCTTGGAGCTTATATATTTTATGGAAGTATTCATATGCAATGAGCAAGGAAGACAGATTTTACCAAAGGTGATGCGGAAAAGATTAAAAATGAACTGGTTACATTGTTTGGAAATGATGGGTCAGCAGCACGCCCTGAAGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGAAACATAATTCAAAACTTGGCCAGTACTCTTCCGCAAAAGTACACCGTTTACTGGATATTAAGCGGAACATTGACGAACCAAAAATAATTGATGACTATAACATTTTGGTAAAAGAATTAGATATTTTAAAAGTGGCTATTATTGATGGACTGTAATGAAGAAAACGTTAGAATAATTGAAGGAAAGCGTATTTATTAAAAAGTTAATCAACCATTTATTAAAGAAAA # Right flank : CTGATAAGATAATTGATAGTAATTTAGTGTTTTTGTTGGAGTAAGGGGACCTACTTCAATTCATACGGCAACTAGTGTTGATCCGATTGATATTACTAGTATGCAGATTACGAAAAGTGTAAATTCTGATCTTGGTAAGGATAAAGGTGCTGATACGATGAGTATGAAGTATCGTGCTGATTTTGGAGTATATGTCTTTTATGGAAGTATTAATACATAGTTAGCAAAAAAGACAGGTTTTACTAACGAAGATGCGGAGAAGATTAAAAATGCACTGGTTACATTGTTTGAAAATGATGCATCAGCAGCACGCCCTGAAGGAAGTATAGAAGTGCATAAAGTTTGTTGGTGGGATCATAATTCAAAACTTGGTCAATACTCCTCTGCAAAAGTACACCGTTTATTAGAGGTTAAACGGAATATTGACGAACCAAAAACAATTGATGATTATACTGTATTGGTACATGAATTAGATGGTTTAAAAGTTGAGATTATTGATG # Questionable array : NO Score: 6.64 # Score Detail : 1:0, 2:3, 3:3, 4:0.54, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 100366-100530 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043233.1 Bacillus thuringiensis strain Bt-GS57 plasmid unnamed2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 100366 32 81.2 36 ......T..CT.GC......G........... AAAGACCATTTGACCGAGAATGATAGAAGCAGGGAT 100434 32 93.8 33 ...........A........G........... TGGTTATTTTCCATTCGTGTTTTATGCTCCTCT 100499 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 3 32 91.7 35 GTCGCACCTTATATAGGTGCATGGATTGAAAT # Left flank : TGATCCGATTGATATTACTAGTATGCAGATTACGAAAAGTGTAAATTCTGATCTTGGTAAGGATAAAGGTGCTGATACGATGAGTATGAAGTATCGTGCTGATTTTGGAGTATATGTCTTTTATGGAAGTATTAATACATAGTTAGCAAAAAAGACAGGTTTTACTAACGAAGATGCGGAGAAGATTAAAAATGCACTGGTTACATTGTTTGAAAATGATGCATCAGCAGCACGCCCTGAAGGAAGTATAGAAGTGCATAAAGTTTGTTGGTGGGATCATAATTCAAAACTTGGTCAATACTCCTCTGCAAAAGTACACCGTTTATTAGAGGTTAAACGGAATATTGACGAACCAAAAACAATTGATGATTATACTGTATTGGTACATGAATTAGATGGTTTAAAAGTTGAGATTATTGATGGAATGTAATAAAAAGCGTCAGAATAGTTGAACGAAAGTATCCTTATAAAGATATACTCTATCAATTTATTAAAGGAAA # Right flank : TTTTAAGTCGTATACAACAGTAACACACAAAGAATATCGCACCTCTTGTAGGTGTGTGGAGTAAGGCTGATAAGATAATTGATAGTAATTTAGTGTCTCTGTTGGAGTAAGAGAACCTGTTTCAATTCATACAGCAACAAGTGTTGATCCGATTGATATTACTTGTATGCAGATTAAGAAAAGTGTAAATTCTGAGCTTGGGAAGGATAAAGGTTCAGATACAACGGGGATAAAGCATCGTGTTGATTTTGGAGTCTATGTTTTTTTATGGAAGTATTAATACACAGTTAGCAGAAAAGACAGGTTTTACTAACGAAGATGCGGAGATGATGAAAAATGCACTGGTTCCATTGATTGAAAATGATGCATCAGCAGCACGCCCTGAAGGAATTATAGAAGTACATAGAGTTTGTTGGTGGGATCATATAGTTCAAAACTTGGTCAATACTCCTCTGCAAAAATACATCGTTTATTAGAGGTTAAACGGAATATTGACGAGC # Questionable array : NO Score: 6.76 # Score Detail : 1:0, 2:3, 3:3, 4:0.59, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCATGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //