Array 1 109470-107973 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYKL01000007.1 Salmonella enterica subsp. enterica serovar Thompson strain CVM43206 CVM43206_contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 109469 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 109408 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 109347 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 109286 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 109225 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 109164 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 109103 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 109042 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 108981 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 108919 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 108857 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 108796 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 108735 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 108674 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 108613 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 108552 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 108491 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 108430 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 108368 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 108307 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 108246 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 108185 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 108124 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 108063 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 108002 29 93.1 0 A..............A............. | A [107975] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126827-125640 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYKL01000007.1 Salmonella enterica subsp. enterica serovar Thompson strain CVM43206 CVM43206_contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 126826 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 126765 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 126704 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 126643 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 126582 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 126521 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 126460 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 126399 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 126338 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 126277 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 126216 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 126155 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 126094 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 126033 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 125972 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 125911 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 125850 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 125789 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 125728 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 125667 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //