Array 1 116756-113339 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOD010000033.1 Trichocoleus sp. FACHB-46 contig33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 116755 37 100.0 37 ..................................... TCATAATAGGCTACCAACTGTAACTCAAGGCCGCCAT 116681 37 100.0 36 ..................................... CAACAACAACGGCACCCCTGCCAACTACTCTTCGCG 116608 37 100.0 41 ..................................... TGATAGCGAAGTGCTGGTTTTTGTGGGCGAAGCAGTAGAGA 116530 37 100.0 35 ..................................... GGCTTGGGGTGTAGAGATGGATGGGGCGATCGCAG 116458 37 100.0 35 ..................................... TCTAAAAGCGCAAGCACCATCCTCACTGATGCCAG 116386 37 100.0 35 ..................................... TTAGGCATCGCCTCAGAGTTCTACACCTTAACGTT 116314 37 100.0 34 ..................................... TTGTTAGGGGAAGGGGGCAAAAACGCCTTAGTAA 116243 37 100.0 36 ..................................... TTTTGTATTACGCCTACAGAGGATATTGAAACAGGG 116170 37 100.0 35 ..................................... AGTATTGAAGCATTTCTGGAAGAACGGACTTGGAG 116098 37 100.0 37 ..................................... GTTGATAATCACCTGCTCTATGTGCGGCGGGATCTGA 116024 37 100.0 35 ..................................... TGGTATGGTGGCCTTCTAGATTGGTTGAGCGATCG 115952 37 100.0 37 ..................................... AGCTTTTCGTTGGTCGTCCAAGCTGGCTTCTTGGCGC 115878 37 100.0 38 ..................................... ACAACACCGTCTGAATAACCCAGTGGGTCTTCAAATAC 115803 37 100.0 36 ..................................... ACTTTTAACGAACAGGCCCAAAGCAGTCTATTTGAG 115730 37 100.0 36 ..................................... GTAGTTGAAGGCGATCGCATAGCCAGCAATCAGAAG 115657 37 100.0 34 ..................................... TTGACTATCCATGCGTCACCCCCTGGAGGGATTC 115586 37 100.0 34 ..................................... ACGGTAGAGATTACTTTGTTGGCTGCAATCTTAG 115515 37 100.0 43 ..................................... GATTTAGCTCGAACTTTGAATTGGTGCTGGGCGGGCGGTACAG 115435 37 100.0 35 ..................................... TTATCTCCTGTGACAGTGTAGGGAGCACTCAATCC 115363 37 100.0 36 ..................................... CCGGGACGTTGAACAGGATAGAGGCAAGACGCGGCA 115290 37 100.0 36 ..................................... GGAGCGGATCATTCACCGACTGGAGGAAACGCAATC 115217 37 100.0 35 ..................................... ATCGAGTTAGATCCTAGAGATAAATACCTTGTGTA 115145 37 100.0 35 ..................................... AAAGAGTCGCTGGAGCTGGGCGAGGAAGACAGGTT 115073 37 100.0 35 ..................................... TCATTGACAGGTTTTTTTTTACCTCAATGGGAGGC 115001 37 100.0 36 ..................................... TTTAGAGTTCCATCACTGAGCTTCACTCTAACTTTC 114928 37 100.0 37 ..................................... AGACGATATGGTAGCAACCCTCGATAAAGTAGCACCT 114854 37 100.0 38 ..................................... AAGGTTAAGCTTCTGTGTCATACCGCCCACTTCCGCGA 114779 37 97.3 36 ...............A..................... TAAAAGCTGCTCAATCACTCGCTTAGCTTCTAGCTC 114706 37 100.0 37 ..................................... ATGTTCATCTCCTTATAGCCCACGGTATCGGTGTAAT 114632 37 100.0 37 ..................................... GATGAGTATCGAGGCTCTATCCATGAAGCATTGGGCG 114558 37 100.0 37 ..................................... CGGAGAATTGCCAATCTGTAGAAGGAATCAGTAAGCC 114484 37 100.0 38 ..................................... GTCATCCTCGCGTTGAATTGGTACAGCCCCGCTTTGCC 114409 37 100.0 36 ..................................... GCAGCAAATAATTTCAAGCCATGCCGATCAGAATGA 114336 37 100.0 35 ..................................... ACAGTTCAGCGAGCCTTTGCTTCTTACGCCAGCCA 114264 37 97.3 38 ...............A..................... ATATTCCCAGTACCACTCGGGGGCTTCTAGGTTAAACC 114189 37 100.0 36 ..................................... AATCGAGGTAAGGGAGATCCCGTTAAACCCTCCGAC 114116 37 97.3 35 ...............A..................... AATGATTGCGAAGGCATTTGAGTACCAGCGGTTGA 114044 37 97.3 43 ...............A..................... AACGGGGTGCTGAAAGCGAGAACCGCGATCACCGGGTTCACCG 113964 37 97.3 35 ...............A..................... AGGACACTCAACACCCGGTCAATCTGGAGGAAGTC 113892 37 100.0 37 ..................................... AACCAGCATTGCCCCCCTGTCAATCATGATTAGAATT 113818 37 97.3 35 ...A................................. CCGTCAGGTTTGTTGTAGTTACAAGGCTTGAGAGA 113746 37 97.3 35 ...............A..................... GCTTTTACCACTGCTGCGGTGCCAAATATTAGGGT 113674 37 97.3 40 ...............A..................... TTCTGTAAGAATCCTTCTCGTAACTTTTGGTGATACTCAG 113597 37 97.3 39 ...............A..................... CTGAGTGTTGTGTATCCTTTAAGGGGCATAGAGCCTTGG 113521 37 94.6 37 ..................C.G................ ACCCAATTCATAACTTGGGTAACTCATATCAAGGTTT 113447 37 89.2 35 ...A..........A...T.......T.......... GAGAAGGAGGTTCAAGTACCAGTCAATACAAAGTG 113375 37 83.8 0 .T................C.....G....G.....CA | ========== ====== ====== ====== ===================================== =========================================== ================== 47 37 98.8 36 GCTGAAATCCTTCCGTTGGGAGGGACCGAATTGAAAC # Left flank : ACATTTACCTTGGCTAAACTTGCAAGGTCATCCAATTTACCAGGAGCACGAAGAAGGGTTAGCACTCATTATGGATAATGCAATAGCTGTGATAGCATCTTGCGAACCATTTCCAAAGTTTTGGGAATGGGAGTCCGACTGTCGTCAAGGGAAGAAGGTAGGACGAGTAGGCTATCGAGTCACCTTGAGGTTTTCAACCCCAGTGACTGGTCCGATTATCTTGGGCTATGCTGCCCACTACGGCTTGGGTGCGATGGCCCCTATGCGCGAGTGGTTAGGTGTTAAACAGCCGAGCGCTCAGAATAAGGTTATATCAGTGACTGCAACAACTCTAAGCACAGGAAATCCGCGCGTTCACTGAAATACTTACAGGATGAGAGCTGAGAGTGAGTCTAAAACCCCTATGGTTTGGACAGCTTGTAAATAAGTACAAGAATTTATGCAAATCCGCGCACCTGAACCTAGAAAACTTTATATGGCAAGGGATAAAGCACCCCGCA # Right flank : TGGCATCGACTTAACCATTGGGGCGGTAAGGATGCGATCGCTAAAATTTAATCTCTCTATTGTGGATTCTGGGCTAATCTCAGGGCCTAGCTTTTGTCTGAGCCGTGCAATCCGACTAAAACCTCATAGCTCTCACTCGCCCTCATTAACCCTAGAATTGGCAGGAATGATTTTTTAGACGAGGTCAGAGAAGCGATCGCAATCGCTAAATTACTGCTAACCGAACAAGGATAACTGTGATGTATTTGCTTTTCTATTGCGCTTTATCTTGCTGGCAGGTGCAGGTTTAACGTCCGTAACTAGCTTCACCTCAGAACCGTCTTTTGTATCTTCTTCCGTTTCTAGGGGAGTTCCATCACTAAAGACATCACCGTTGAGTACTGGATCATGACCTGTCCGGATACGGCTCTCATTGCGGGTGATGATCTTCCGCTCAAACAGATTACCTGCTACCTCGGCTTCTTCCTTCTCAGTTCGTGGTTCAGTATCAGCAAGAGCTA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGAAATCCTTCCGTTGGGAGGGACCGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 1 5087-4547 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOD010000043.1 Trichocoleus sp. FACHB-46 contig43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ====================================================== ================== 5086 23 100.0 51 ....................... GAGTCGGATTCTATAGCCCTAGAGCTGGATTCTACAGCTCGCAAAACCCAA 5012 23 100.0 50 ....................... ATGTCTCAGGATTCGCGATCGGCAATCTAGCGGCGACTCGCAAAACCCAA 4939 23 100.0 51 ....................... GCTAAGCTGAGCTTCGGTTTCTATGAGCAAGCTGGGGCTCGCAAAACCCAA 4865 23 100.0 50 ....................... GATGATAAACCAGCCGATTGCCGCGAATAGAAACACCTCGCAAAACCCAA 4792 23 100.0 50 ....................... ATCCCAGTCTTCTTAGCCGTCTGACCTAAATCTTTGCTCGCAAAACCCAA 4719 23 100.0 52 ....................... TCGATTCCAGCCTCTAAGAATACTGGAATGTAGTATGGGTTTAAATCCACCA 4644 22 95.7 54 ..-.................... CCCCTCAATTGTCAGTGGGACTTCTGTATTTTCATAGCAGGTTTAAATCCACCA 4568 22 91.3 0 ..-........A........... | ========== ====== ====== ====== ======================= ====================================================== ================== 8 23 98.4 51 AATCCCCGCAAGGGGACTGAAAC # Left flank : GATTTGCCAGATTCTAAAGCGGCTAATAAACGGCGCACTCGTTTACATAAACTCTTATCGGGTTATGGCACTTGGACACAGTACAGTGTGTTTGAGTGCTTTTTAACGGCTGTGCAGTTTGCTAAGCTTCAGATTCAAGTAGAGAGGTTGATTAAGCCAGAAGAAGATTCGGTACGAATTTATGTTCTGGATGCTGGGGCTGTTAAACGCACAATTACTTATGGTTCGGAGAAACCTCGACAAGCTGAGGTGATTATTTTATGATGAGGCCATTCCTTCAGATTTCTGGCAAACCTAAGCGAGGGCGAAAACCCTAGGGGGTTTGCCAAAACCGCTAGAACCTTGACAACTCAATAGTTTTATTCATTTAGTTTCAGGCGAAGCAGGCAAAACAGGGCTCAATTGAGTCTCTGAAAGCGATCAAAGTTTGAGGTTTGTCAAAACTGCTTCTAGGATTCCGTCGTAAAGCACGTTTCAGACGGCGGACTCGCAAAACCCAA # Right flank : ATGTCATAGGCTTTCTAACATGCAGAACAAGGTGTTTAAATCTACCTCAGATCTTGCACCAAGCTTTGAAAGGTGCGAGAAAGGGCGTGAAACCAATAGACTGCAAGAACAATGGACATTCTTGCTCACGCCCAAGAGCTAATCTACCACTTGCTGGAAGCGATGCCGAGTCCTTACCAGCGTCAAAGCCTGCACGCTTTGCTGGAGCTGTTTCTCCGAGCCCAAGGGTCTCCCCTCCCGGAGCACAGCAAATTGAAATCCCCCAGTGCTCTCAGCCGCTTCCTCAACGTCTATAGCTGGTCCGTGCGCGAAGTCATTCGTCGCCTGCGAGAAGCAGTCCGTCAGCAACTGCGGCAGTATTGTCCTCACGGTCGCCGACCCCATCTGCAAGTGATTGTTGACTTGACGACCCTAGAGAAACGTGGCAAGGGCACTGCCTTTGAACAGTTAGTCTCGGTGTTGCACGGCAAACGAGGCGTGCATCTCGTCGTCTTGTACCT # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.37, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,14] Score: 0.37/0.37 # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.10,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //