Array 1 1445-219 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVYN01000183.1 Streptococcus pyogenes strain 154 contig_94, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1444 32 100.0 33 ................................ GGGAAAAACGTGGGCAGTAGAGTTTTTGCGAAG 1379 32 100.0 36 ................................ TTTGATTTTACCGTTGAAGGCATCACTAAGAATAGC 1311 32 100.0 34 ................................ AAACATAGGCTAAGGCATCTGTCAATAGGGGCTT 1245 32 100.0 34 ................................ AGCTTTTATTATCAGAATTTGCTAAACGAAAAAC 1179 32 100.0 34 ................................ CTTTAAAGCAACTGCCTTGGTTGTTGTTGGTGAT 1113 32 100.0 34 ................................ AAGCTAAACCTATCCTAAAAATCAAAGGCACAGG 1047 32 100.0 33 ................................ AATGACTATTATGGGGATATCTGCCACGATATA 982 32 100.0 34 ................................ ACCAATAATTCTAAAGTCGCTATCTCTATCTACG 916 32 100.0 33 ................................ TTATAATACAACCAATAGACATAATCTAGAATC 851 32 100.0 37 ................................ AAACTATGTGACTGACACTCTGGACTATGTCAAATAC 782 32 100.0 34 ................................ TGCTGTAGGTAAAGCCGATAATAACTGGGGCGGA 716 32 100.0 33 ................................ AAAAAAATAGCTAAGATCGCTACTGTGTCTGCT 651 32 100.0 35 ................................ ATGTAATCCTGTTGTTAACTTGTCAAAGTCATAGA 584 32 100.0 35 ................................ AAAAACAAATCGTTATCAATTTGCGTCTTTCCAGC 517 32 100.0 34 ................................ GATTCCCCCACGAAGCAAACAAGAATTCACAGTC 451 32 100.0 37 ................................ ACGTAAAATATTAATCAGTGTTGATTTACCAGTAACC 382 32 93.8 34 .......TT....................... AAATTTGGCGAGGAGAGCGTGAGGCGAATCTAGT 316 32 100.0 34 ................................ ATTAGCACTGGTTATATTAAGTGCCGAGGAAAAA 250 32 96.9 0 ...............................G | ========== ====== ====== ====== ================================ ===================================== ================== 19 32 99.5 34 GTCTCACCCTTCATGGGTGAGTGGATTGAAAT # Left flank : | # Right flank : GATGAACCCGACCTCTCTTTTAATGAGGTCGGGTTTTTACATGCCTTTAGTCAACCATTTATCTGATAGCGTATCAAATTCAAGTTTTTGCATGTTCTAGTCTATGGTTTGCGCCACTAGCTTTCGGTAAACTAAGAGTAACTTAAGAGAGGAGTTATTTATGACACTATCACTTGTATTAATGGTATCGGTTTTTGGGGCAGGCTTGTTATCCTTTTT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCATGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 14912-15148 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVYN01000125.1 Streptococcus pyogenes strain 154 contig_41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 14912 36 100.0 30 .................................... ATTGATCACAACATCCAACGCTTAGGTTAT 14978 36 100.0 30 .................................... GTCAGACTGCCCACAAATAATTTTAGATGG 15044 36 97.2 30 .......................G............ TAGAGTAAACCGAATCTTTGCCATCTCTGG 15110 36 94.4 0 ..................C.............C... | T,TT [15139,15143] ========== ====== ====== ====== ==================================== ============================== ================== 4 36 97.9 30 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGCGGAGCTTTTCTAACAAAGGATGAAGTGGCTAGTTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATGAAGATTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCGAGACTGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : CATTGCCAATGGTAACTTGAGAAAGAGGGTTAATACCAGCAGTCGGATACCTTCCTATTCTTTCTTTTAAAGCGTTTTCATGTTATAATAGGCAAAAGAAGAGTAGAGTGATGGAACAAACATTTTTTATGATTAAGCCGGATGGGGTTGAGCGAGGGTTAGTTGGAGAGGTTTTGCGGCGGATTGAGCGTCGAGGGTTTACATTTGAACGCTTGGAGTTGCGGCAAGCTAGTCCGGAACTCTTGGCTAAGCACTACGAAGCCTTGGTAACTAAACCATTTTATCCTGAGCTTGAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGGTGCTGTCGGGAAATCGGGTGATTTCCTCTTGGCGAACCATGATGAGAGTAACCAATCCTACGGATGCTCTTTGCGGAACCATTCGTGGGAATTTTGCTCAGGCTCTTGGTGATGATGGAGGTATTTTTAACATGGTGCATGGGTCTCATTCAAGAGACTCTGCTAGGCGT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], //