Array 1 22610-24586 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGGK01000005.1 Streptococcus sobrinus TCI-77 contig00005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ====================================== ================== 22610 24 100.0 38 ........................ TAGCCGTAGTCTAGCGTAGACCTTGTTTGACTAAGTTT 22672 24 100.0 37 ........................ TTAATGATACGGTGCTTTTCATTTTCCCGTGTAGTTT 22733 24 100.0 37 ........................ TAAAAGAAATGATGTAGATACGTTACTCGAAGAGTTT 22794 24 100.0 37 ........................ TGGGGATAATATCGCCTTTAGTACAATCGGTCAGTTT 22855 24 100.0 37 ........................ TACGACCGTGTCCTCCAATGACAGTTGAAATAGGTTT 22916 24 100.0 37 ........................ CTGAACCTGTTGAGGGGTTGCGTTTACCATAAGGTTT 22977 24 100.0 37 ........................ TAACGTATCATTACGTGGCAACCGAGCCATCAGGTTT 23038 24 100.0 37 ........................ TGCCTGGTTTCCTTCTTTTCGGGATTGGATACTGTTT 23099 24 100.0 37 ........................ TAATCAATCGGTCGATCCATGCCCTAGTCTTATGTTT 23160 24 100.0 37 ........................ TGATGAGTACGACGAACGGTACTGCTATAGTCCGTTT 23221 24 100.0 37 ........................ TACCATCCCGATGATCCTTGAGAGTATTTCTCTGTTT 23282 24 100.0 37 ........................ TGTCAATCCCTATAACAGCAACAACCGTTCAGGGTTT 23343 24 100.0 37 ........................ CAGGTGGACGACTTCTACAGATACTATGTATCAGTTT 23404 24 100.0 37 ........................ TTGTATCTAACATAGCAGGTCAACTTGAACCTGGTTT 23465 24 100.0 37 ........................ CTATAGCTGTTCTGGTTGGTTTGTTCTGTCTGAGTTT 23526 24 100.0 37 ........................ TATGGCCTATTACTCGGCAAATGCCAGTTTAAAGTTT 23587 24 100.0 37 ........................ TTATATTTAAACCGCTTTTCCAAAAACTCATCAGTTT 23648 24 100.0 37 ........................ TGGAGAAGTTCAGCGAAGGAATACGACCAGCCAGTTT 23709 24 100.0 37 ........................ TATCAGTTTCGAGAAAAGAAATTGGATGCACTTGTTT 23770 24 100.0 37 ........................ TTGGGAAAGGCGAAAGAATATTACAGTCTATGCGTTT 23831 24 100.0 37 ........................ CCAACAGTAGATCGTTATTTACCACAATCCCCTGTTT 23892 24 100.0 37 ........................ TGGTGCTGAAGATACTTGGTTCAAGATGAAAACGTTT 23953 24 100.0 37 ........................ TGTTCGCACTAGGGGCTTTTTGTACTCGATTTGGTTT 24014 24 100.0 37 ........................ TAGATTTCTCGCATTTCCAAAATGATTCCTTGCGTTT 24075 24 100.0 37 ........................ TTGTTTAATGGCAAAGATAGTATTTATCGCTACGTTT 24136 24 100.0 37 ........................ TGTTATCACGCATACGGCAAGCCCCCTAAAAAAGTTT 24197 24 100.0 37 ........................ GTTCTAATTGCCTGGCTAAATTTTGATCAGCTGGTTT 24258 24 100.0 37 ........................ CGGGCTTACAGACGCATAATTAAAAAGCTTGTAGTTT 24319 24 100.0 37 ........................ CTAACTTGGGGGAAGATGGTTTATGACCGCTTCGTTT 24380 24 100.0 37 ........................ TCCCATGCTCTGAATTTTGGTATGATTGTGAAAGTTT 24441 24 100.0 37 ........................ TATTTCCTCTCGGCCAAAGCAGTGAAACGGTTAGTTT 24502 24 95.8 37 ..........T............. TGGTTTTGGGGATGCTAACTGGTACGAATACTAGTTT 24563 24 75.0 0 ..........G.....T...GCAT | ========== ====== ====== ====== ======================== ====================================== ================== 33 24 99.1 37 TACCCGCACACGCGGGGGTGATCC # Left flank : ATGAACATACTATCATAGAAATTGCTGCTGTTAAAGTTAGTGGCTTACAGATAGAAGAATTTGGCTATCTTATAAAATATGATAAAGTTTTACCGAAAAATATAGTCTCTCTAACGGGAATAAGCCAAGAACTTTTAAATCAGAATGGAAAAGATATTCAAGTTGTACTTCAGGAATTTCTAAATTTTATTGGAGATTTTGACCTTGTTGGTTATGGAGTGGGATTTGATATTAAGTTTATCAATAATGAGTTAAGAAAATTGGGCTATCCTTTATTGGAAAATAAAGTACACGATTTGATGAAATATGTTAAAAACGAAAAGTTGTTTTTAGATAATTACAAACTTCAAACAGCCTTAAAAGCATATGGAATTGAAGGAAAAGTGCCTCACAGAGCTCTCCCGGACTCTCAACTTATCTATCAGCTGTCTACCAAAGTGAATAAATTTTTGAAAAGGATCAATCAGAAATAGCGGTTTTATTGGGATCTTTTAGTGTTT # Right flank : TAGATACTGGAATCTGAGAAATCTTGGTGAAAAAATTAATTTAATTTAGCGTCGTTTATTTACTTATTAGGCGTGCCTAATTTTTGCTTTTCTGTTATAATGAAGGCAAGTAAAAGAATAGAAAAGAGGATTTCTTTTGGAAAGCCCAAAGAATAACTATAGAGCAAATAAGGCCTCTTTGAGCGAGGTTAATCAGAGTGTTGCTGTTCCTGAGACAGCTTCATTTTGGCGAACGCTCAAGGCCTTTATTGGACCGGGTGCCCTAGTAGCAGTCGGTTATATGGACCCTGGAAATTGGATTACCAGTGTGGTTGGTGGTGCTTCTTATAAGTACCTCTTGCTGTCGGTGGTCTTGATTTCCTCCTTGATGGCCATGCAGCTGCAGCAGATGGCAGGGAAACTTGGCATTGTTACCCGTCAGGATTTAGCCCAGGCAACCGCTAATCATCTGCCAGCCTGGTTGCGTTACATCCTATTTGTCATTATTGAGTTGGCCCTGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2561-3308 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGGK01000049.1 Streptococcus sobrinus TCI-77 contig00049, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 2561 36 100.0 35 .................................... CATATCTTCGATCGACATAAATTTGTTATAAGTCG 2632 36 100.0 36 .................................... AAGATTTCATGGCCACGACTGTATTTAGCGCGAGCA 2704 36 97.2 37 ...............G.................... TCGATTTCGTGCCGTCCGTTACAAAGTCCTAGTTGAT 2777 36 100.0 34 .................................... TGGATTTCTTGTTTGTACAAGCTGAACAAGCTCA 2847 36 100.0 36 .................................... CCCTGACAGAAAACGCCGTTGGCATCGATGTCAATA 2919 36 100.0 36 .................................... TCAACAGTCGCCCTGGTAACGCAGTTTGAATAATTG 2991 36 97.2 36 ........................A........... TATCCACCGTCAACTTTTACCCACTCTGTCTTATCT 3063 36 97.2 34 ...........T........................ ACGTCACTCATATTTTCTAAGTCCCAATCATCTT 3133 36 91.7 33 ......AT.......G.................... TTTCCATGAGGTCGTAAAAATCTGCGTTCATAA 3202 36 97.2 35 ........T........................... CATAAAGGGTCAAGATTTCTGTCATCCGATTCTTA 3273 36 86.1 0 ......AT......C...............A....T | ========== ====== ====== ====== ==================================== ===================================== ================== 11 36 97.0 35 ATTGAATGCCCCATACCCTCGTAAGGGGACGGAAAC # Left flank : ACTCTCTGATAAGAGCCTTTAAAGAAAAAGATCCCAATTGCTATCTGGCTAGTTATACGAGGAGGTGAAGCCATGGGATGCGATTTTAATTTGACGGTAGAAGAACTGCTGTTTGCCAGAAATTATCAGCTCTACTGCCTAGTGATTTATGACATTGCAAATCAAAAGAGACGACTCAAATTGGCACGATTGCTGGAAGGCTATGGCAAGCGGGTTCAGAGATCCTGCTTTGAGGTAAAACTGAGCCAGAAGGTTTACCGTCGGCTGCTCCAGGCGCTTGAAGACTTTTACGAGGAAGATGAGAAAGACTGTATCACACTTTATAAAATTCGTCGGGAAGAGAGGGTTGTTTTCAACTCTTATGATGAGCCAGAAGAAGAGACACAGACGATTATCTTATGATTGCAAAACCTCTATGAACATGATAAACTGTTATCGGATAGTTTCAAGCTGAGGTACAAGATATAGCAGTGCCCGTCTAGACTGACACAAAATATGCT # Right flank : TTATCACACCAGTGTATTTTTGCGATAGGTGAATCGCTTTCCTATCGTTGCTTCTGCAGGCTTAGACCTTTCAGTCGGTTTTTTTAGGAGAAATATCTTCAAAAAGGATTTGACTTTTATCGCTGAAAGGTTTATAACCAACCAAAATATAAATAAAAAAAGGGCGCCTTTTCGGTGAAAAATACTTTTCAGCCGGAGGTGCCTTTTCAAATAGAGAAATGATGAAAGAACTAAGATTATTTTTTAAAAGAACAGCTTTGCCGGCGAATGTGCTAGCGGTAAAGCTGCAGGGTTATCTGATGGGTCAGATTTCCGATGACTACGCCGAATTTTTGCACCAGCAGGAAACCAATCCCTATGCCTCCTTCGTAATAGATAGAGGGGATCAGCAAGTCTGGACGGTCAGTCTCCTGACAGAACAGGCTTGTGAGCAGCTTCAAGAAGGCTTGCTGTCTCTGCAGCATATTCAACTAGACTCTTATGCCGAGCTTATTAGCATT # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAATGCCCCATACCCTCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.00,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //