Array 1 4352-8744 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHAB01000007.1 Ligilactobacillus ruminis strain DPC 6830 NODE_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 4352 30 100.0 36 .............................. AAGATATTGATTTGAGATACACGCAATCAGGGTTGG 4418 30 100.0 37 .............................. TTGCTTGGCTTGCTTGAAGAGGTCAGCCGTATTTTCT 4485 30 100.0 37 .............................. TAACTTCTTCAGGTACTTGATAGTGGTATTCGCTAGG 4552 30 100.0 35 .............................. GATGCTGACGCGGTAAACGCAAAGATCGAGTTCCT 4617 30 100.0 37 .............................. ACAAAAATCAAATTCGGGTTGCTGATGTGGTTAGCCT 4684 30 100.0 37 .............................. CCTAAACGTTTCATAATCTCTGCAATTTGCTTATCAT 4751 30 100.0 37 .............................. TTATATTGGTGGAAAGAATTTGACCAATATAAAATCG 4818 30 100.0 37 .............................. TTGTACCATTGGAGTTCATAGCTCCGCTACCCTTAAG 4885 30 100.0 35 .............................. TTAATCAATCACATCTAGTATTTCAGTAATCAGAA 4950 30 100.0 35 .............................. GTAGACTGGTCTAGTGAGTTTTTAGCAAGATATAA 5015 30 100.0 36 .............................. TTGCTTGTTCCGGTTATCCATAGGCCTGATGCGGTT 5081 30 100.0 35 .............................. AATGCGCAAGAAAGGCAAGCGTGTAAGCTACTCCG 5146 30 100.0 36 .............................. AGAAGCTGCAGAAAATGCTGGAAACAAGCGGTAAGA 5212 30 100.0 36 .............................. TTGTTGACGGTATATAATAGCGCCCGATTGTACCCG 5278 30 100.0 35 .............................. TATGTCTGTATCGGTGCAATTGGTGCTTGAATTGT 5343 30 100.0 40 .............................. GTTATTGAAAAACAAGGTAATCCACCTTGGTACAGTGAAG 5413 30 100.0 37 .............................. GTAGCGTTGCAACATTGCCCTGCACGTCCCCAACGGT 5480 30 100.0 36 .............................. TAGGCCTGATGCGGTTCGCCCGTTTGGTCGCAGCCG 5546 30 100.0 35 .............................. TGGAAACTCGGCGTCAATCAGCTGGCCGGCCTTGA 5611 30 100.0 35 .............................. TTAGGAGGGATGCATATGCTGCAACACAGCTTCTC 5676 30 100.0 36 .............................. TGATAAACACATTTGCGTACTTAACTGCTACACTGT 5742 30 100.0 36 .............................. TGCAGTTGATTACAGTAACTATCAAAAGTTGCGTCA 5808 30 100.0 38 .............................. GCTGAAAGCGGGGGTGGCAAGCGATGAGCGATGATATT 5876 30 100.0 35 .............................. GTTGCTTGCTGAGCAGCTCAGAAAGGTCAAGGCCG 5941 30 100.0 34 .............................. TCATCATCGGTGCAGTAGCAGGTGGCAGCGGCGG 6005 30 100.0 35 .............................. GTCTACAACAAGCCTGATGACACGATCAAGGAAGC 6070 30 100.0 36 .............................. ATGCCTGGCTGGGCGCTTGTCGGTTGTTTTGGTTGC 6136 30 100.0 35 .............................. AGTGCTGAGAGAAAACGGGTTAATTGTCCCTTCAA 6201 30 100.0 38 .............................. GCAAAAATCAGAGAGCGGCGTTGGCGTTTGCGTAATGC 6269 30 100.0 38 .............................. GATGTTAAACTGCTGCAAGCCATGCATGGCCATGTTGC 6337 30 100.0 39 .............................. ACGCTTTTATACACGTTGATTCTAAACTCTGACGGGGCG 6406 30 100.0 37 .............................. GTTTAAACTCAAAGCCAAAAAGTGCATGATATTTGGT 6473 30 100.0 36 .............................. TAGCCTGAGTGATTTGATAAAACTCAGGGATTGTAA 6539 30 100.0 36 .............................. AAAATTACAGAATATGGAAGAAAACCAATCTTTTCT 6605 30 100.0 39 .............................. ACGCTTTTATACACGTTGATTCTAAACTCTGACGGGGCG 6674 30 100.0 35 .............................. CTCGCAGAAAGTCTTAAAATGTGGAATACAGATAA 6739 30 100.0 37 .............................. GTTTAAACTCAAAGCCAAAAAGTGCATGATATTTGGT 6806 30 100.0 36 .............................. TAGCCTGAGTGATTTGATAAAACTCAGGGATTGTAA 6872 30 100.0 24 .............................. ATGGTTAGACATAACGTATGCGTA Deletion [6926] 6926 30 100.0 37 .............................. CGTACTCGAGTTGAGTTAACTCTTGCGTGTAGTAGCT 6993 30 100.0 35 .............................. GTAGATTTGCACCGCCAATCTGCAGACCGTTTAAG 7058 30 100.0 39 .............................. AGTCAAGGTGATTGACAAGGTAGCTCTTGTATCCGTAAA 7127 30 100.0 39 .............................. TAAGATTCTTAATTTCCAAATCGTGCTCCTGCAACTGCA 7196 30 100.0 36 .............................. TTCATTTTCCGTTTCAAGCTCTGCAATCCTAACTGT 7262 30 100.0 35 .............................. CATGTGATCTATAAGGGGCACGTACTGGGCGACGG 7327 30 100.0 35 .............................. GTTTAAACTCAAAGCCAAAAAGTGCATGATATTTG 7392 30 100.0 38 .............................. AGTGAATACAAATTGCCCACTTCGTTTACAACGTCAGT 7460 30 100.0 36 .............................. ATGGCTTTGCGAAGAAGATTGCGGTTGCCTTTGATT 7526 30 100.0 36 .............................. ATTACCAATTTTAGCCAATCTGTTGTGGACGATTTT 7592 30 100.0 36 .............................. GTACCAATGCCTGCTTCTGATTGTCAAGAGCGTCAA 7658 30 100.0 37 .............................. TTAGATAAATGTTCATAACTCTATCATTAACGTACTC 7725 30 100.0 36 .............................. CGTATCGGGTGCTAAATTAGCGGGTGGAATGACCTA 7791 30 100.0 36 .............................. CTGCGATTTGACGGTTGTTTTGCCGTCTGCTTCATC 7857 30 100.0 35 .............................. TCCGCTCACGTCACTGTTGTCAGTGCGTAAGCTAA 7922 30 100.0 37 .............................. TAAGATAAGCCCTGTTTCTTTCCGTCTGTTTTACGTT 7989 30 100.0 35 .............................. TTGTTTTTCAATGTGTAAAAGCCTACTTGATTAAG 8054 30 100.0 35 .............................. AAATTAAGAAGATAGTCAAGCATTGACTTTATAGA 8119 30 100.0 35 .............................. TTCTAGAAAAACATTAAGTGAGGAAAAGTACACTA 8184 30 100.0 37 .............................. ACCTGTACCCAGCCGTTGTAGTCAAGCATTGCCGGGT 8251 30 100.0 34 .............................. ACGGTAAAACCTGGGGCATCAAGGACTTCTGCCG 8315 30 96.7 35 .............................T CTGGCCATCTGACGCTTTAGGATAGACCGTGACAT 8380 30 96.7 39 .............................T GTACACCACTGACTGATGTCTTGAGTGACGTGATGTCGC 8449 30 96.7 36 .............................T AAGGTATTCAGGCCTGACCTTGTAGACGGTGCCGAA 8515 30 96.7 35 .............................T AAGGCTCGATTGTTGCGCCAGACTACGAGGATGGC 8580 30 96.7 36 .............................T GTTAATTCAGATACCAATTGCAAATCAATGCCAATG 8646 30 96.7 35 .............................T GACTTTGTAGCGGTTGAATCACTGTCGCGCGACAA 8711 30 93.3 0 ........................T....T | AT,C,C [8734,8737,8741] ========== ====== ====== ====== ============================== ======================================== ================== 67 30 99.6 36 GTTTTTATCTAACTGATGAGGAATGTAAAG # Left flank : GTTGAATATTCTCCTTTTAAAATTTGGTGGTGATAAGTTGTATGTAATTTTAGTTTATGATATAAGCGTTGAAAATAATGGGTCCAGGCGTATGAGAAGAGTTTTTAAAATATGTAAAAAATATCTTACTCATATCCAGAACTCTGTTTTTGAGGGAGAACTAACAGTTGCAAAATTAAATAAATTAAAATCAGAATTGTCTAAATGGATAGATAAAGATTTAGATTCAATAATTATTTTTAAAAGCAGAAGTAACAAATGGTTGATCAAAGAGTTTTGGGGTATGGACACATCCGCAGATACTTCAAATTTCTTCTAATATATCTGTCTATGTGTAATAAATAAATTATTACGGTGTTTCGACAGATTCTATAATTACTGATACGAAAGCATCTACTGATGTTCGAGCATATTATATATCAAATAAGCTTCAAATTTTTATTGCATTGACAGAAATACGCTTAAGATATATAGTGGTGTTAGTATTTTCAAGCTATGGA # Right flank : TGGTGACGATAAAAAAATAAAACAACGGAATCATATAATTTTAAATCGTTTTTAGCCTCATCCCCCAAACGCCCCCTCAAATCCTTCCCGACTGACGAACCCATAGGATTCAAGCGTCGTCTTGTCGCTTGAAAGGGCTAAGATTGCCTGTTTCAACGCATTCGTTTCTTCTTTTTCAACGTTGATTGTTTTTGCCAAATGCAGTATGACAACGCAGCCCAGTGCGAACCTGTTCGTTGTCGTCTCGGTATTTTTCATGCGAAAAAGATATTTGGAATATGGTTGGGGCGTTACGGGCCTTGTTTCGATTTTGATATCGATCAGGTTGCCGTTGTGACAGCAGCAGTTGCGGTAAAGCGCGATGCAGTCCATCCAACTGATGAGCGCATTTGCGCTGCAGTCATATATGGATGCGATTTCTTTGCGGTTGCGCTTGCTCATGAGCTTATAGATGTGGATCAGTTCTCCGAGCGAAATGTGTTGCGAAAGCTCGAGAAGAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAACTGATGAGGAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 2 28049-27221 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHAB01000007.1 Ligilactobacillus ruminis strain DPC 6830 NODE_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 28048 36 100.0 38 .................................... ATTAAATTACAACAAGACTTAATTAAGGCGGCAAATAA 27974 36 100.0 36 .................................... CAAGGCGATTGATGAAATATGAAGACAACAAAACAG 27902 36 100.0 35 .................................... TTATTAAAGAATTGCAAGCATTTACGAACGAAAAG 27831 36 100.0 36 .................................... TCAAGGTAATGTAATAATCGTTCCAATGACTGAAAA 27759 36 100.0 33 .................................... GAAAAGAAACGAGGTACTTAAAAATGGAAAAAG 27690 36 97.2 36 ..................................G. TTACGTTAATAAAGATTTGTTGAAATATTTTAACAT 27618 36 100.0 36 .................................... AAAATTGAGGAGGAAAACTAAAATGACTGTAGATCA 27546 36 100.0 36 .................................... AATTGGTGATTATGAATTATTAATTGATATTGACGA 27474 36 100.0 36 .................................... CTGGAATGGTTGTCTTTATGACGCCAAGATTTATCC 27402 36 100.0 38 .................................... TTAATCGGAGGTTTTATCAATGGAAACAATTAAAAAGT 27328 36 100.0 36 .................................... AAAAAGATTATCTTTATATTGCAACATTATATTACT 27256 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 12 36 99.8 36 GTTTTCGTCTCCTTAACTCGGAGATAGGTAATGATC # Left flank : GCAGGATACGGACAGTCTGGGTATCACGCTTGCAACGAAATTAACAGATGTGATGAATGAAACGATGAATGCCCCGATGGTTGGAATCCTGCACCATGATGAAGGAGTTGATCTTATTCCAGCAAACCTTGAGCTTTCAGCAATGGAGTATAACCTAATGAATGCCATGAGCAGAGAAACCACAATGAAAAATTACTTGAATCAGATTAAAGACAGATATGATTTTGTTGTGATCGACTGTATGCCATCGCTTAGTATGGTAACGCTCAATGCTCTTTCGGCGGCAGACAGTGTGATTATTCCGGTTCAGGCTCAATATCTGCCAGCAAAAGGAATGACGCAGCTCGTGCAGACGATTTCAAGGGTAAAGAAGTATATCAATCCGGATATTAAGATTGATGGAATACTTCTGACTCTCGTAGACAGTCGGACTAATCTTGCTAAAAGTACGGTGGAAGCTCTGAGGGAAAACTTCGGGAATCATATTAAGATGTACCGGA # Right flank : CCATCAAGTATCAAAATGGCATCAGAATGGGGGGTACGTCCATAAAATAACGCCCAAAAAGCAGGCCAGAAACACCCTGCTTTTCAAAGACTTGTCCATTTCATAACCAAGTAATGACAGATAAAATAGGGAAAAAAATCCCCCGTTGGTATTATAAAATACATAGCCAATCTTTTCAATATCATTTGATTACTAATCTTGTCAACCACCGTCGCAATTCCCCAGAAGAAGCAGTACAGCAGGTTGATTCTGCCACCTAGGTTGAACGGAAGACCGCAGTAGTCCCAAAAGATTTTGCCGAAGACGATTTCCGTGAATACTCTGCAGATGTATTCATAGGCGCGCCGATGAAGGTCCCGAAGGCGAAGACGAATCCGTCCGAACGGTCACGGTAATTGTACATGATGTACGTCGCCATGGCGATGGCTATCCCCCAGACAATGCTGAAAGGTCCCAAGACGAGACTGCTTCTGCTCATCCAGACACCGGCAGCTGCGCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCGTCTCCTTAACTCGGAGATAGGTAATGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //