Array 1 94080-91412 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMLI010000001.1 Pasteurella multocida strain PMS 2 NODE_1_length_181992_cov_50.072940, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 94079 28 100.0 32 ............................ TATACCAACAGTCAATTGAAACTGCCTATACG 94019 28 100.0 32 ............................ TATACGGCAGTTAACTTGTTCGACGTGGGCGA 93959 28 100.0 32 ............................ AGTTTCAAGGCACCTATCACAACTCGCAATTG 93899 28 100.0 32 ............................ TTCTGAAGCTAGCTTTTTAACTTCTGCTCTAG 93839 28 100.0 32 ............................ AGTTCGATTTCACCTTCTGCGCTGACATCGCC 93779 28 100.0 32 ............................ TTTACCGCCTTTACCACCCGTTATTTGCATAT 93719 28 100.0 32 ............................ ACCATGGCGTCGCCCATAAGTCTTTATCATTT 93659 28 100.0 32 ............................ AAAGCCTTATCGAAATCGCCCACGTCGAACAA 93599 28 100.0 32 ............................ TATGCGCGATATGAGCAAGTCGGCAACGGTGA 93539 28 100.0 32 ............................ TTTATTTGAAATAGACGTATGCCAGCCCTGTT 93479 28 100.0 32 ............................ TTTTTCGACATCCTTAACAACGGCTTGATCTG 93419 28 100.0 32 ............................ TTTTGGATGGGGTTCGATAGAGTAGGAGAGCG 93359 28 100.0 32 ............................ TGTTTTCGGATCAGCCAACAGTTTTCCGTCGA 93299 28 100.0 32 ............................ ATCGCCTTTCAATGCTTCCATGTTTTGAATCA 93239 28 100.0 32 ............................ GATTGGAATAACTTTCAAGCCGTCCGGATGAC 93179 28 100.0 32 ............................ GTCGAAACCGGTGGCAGAGCCGAAAGCGGAAG 93119 28 100.0 32 ............................ ATCTTGTAGGGTTAAGACAAGATGTGTAGATA 93059 28 100.0 33 ............................ TTCTCTTACGCTTTCTGAATAAACTAAATCACA 92998 28 100.0 32 ............................ ACTCCCGGATAAATTAGTTTTTCTTCAAAAAC 92938 28 100.0 32 ............................ ACGACAGTGATAACCGCGAGCGGGTATTGAGC 92878 28 100.0 32 ............................ ACTACAAGCCAGCGACGACAGTTATAATTTTA 92818 28 100.0 32 ............................ ATAACTTGTAATTTAATAGGGGCTACCCTTGA 92758 28 100.0 32 ............................ TTTTCAATAGTAAACCATTGAGTTGCTAAAAC 92698 28 100.0 32 ............................ AACTAGCACTTTCACAATGGGTGTGGAAAATG 92638 28 100.0 32 ............................ TTTTAATAGAATTTAACGTTAAATTTTACTAT 92578 28 100.0 32 ............................ AGTATTTATCTATGCAAGGTAATACTAAACCA 92518 28 100.0 32 ............................ AAATAATCAACAGGCTCAAGCTGTACCGCCAC 92458 28 100.0 32 ............................ AGTTGAGCTTGCAAGGATAGTGAGTTCAAGCA 92398 28 100.0 32 ............................ AACTGGTACGACCTTGTGAACGCCCACATTCT 92338 28 100.0 32 ............................ TGATCGGGTTTATGAAGTGTTAGGTAAAGCAG 92278 28 100.0 32 ............................ TTGCTTTGTGATGACATCGTGGGTAACTGCGG 92218 28 100.0 32 ............................ AAGCCAAATTCACAGAATCTACTAGACCTAGC 92158 28 100.0 32 ............................ AATAACCCTAATTGCTCAAGAACTTCTAAAGC 92098 28 100.0 32 ............................ AAAAGCAAGGGGGTGGAGATTATGAAAATGAA 92038 28 100.0 32 ............................ AGCTCATGTTGTCAATAACGCACTAAACAAGC 91978 28 100.0 32 ............................ TCTTAGAATGGGAATGCTGTGTCGTATTTTTG 91918 28 100.0 32 ............................ AAATACGTTCACCTAAACAAGCTGAAACTAAT 91858 28 100.0 32 ............................ AAGCCACAGCGCAGATGAGCACGTCATCACGT 91798 28 100.0 32 ............................ GATCCAAGCGTTACAAGTGAATCGTGGCTCTT 91738 28 100.0 32 ............................ AAGCACTATGCCGATAGCTCCCCAAAAGTCAT 91678 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 91618 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 91558 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 91498 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 91438 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 45 28 99.4 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15836-18083 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMLI010000004.1 Pasteurella multocida strain PMS 2 NODE_4_length_133458_cov_44.665767, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15836 28 100.0 32 ............................ GCACACCGCCGAAGGTGCGCTCAGAAATCTTA 15896 28 100.0 32 ............................ TGAAATCACAGGCGGTCGGTTTAGCATTAAAA 15956 28 100.0 32 ............................ GGTATAGCCACATTCCGCAGAACGATACAGCC 16016 28 100.0 32 ............................ AAGTCCACCAACCACCCATGCTGAATTTGCTG 16076 28 100.0 32 ............................ CTGTTTTGGGTGGTGGTGGAAGTGGTTGCCAG 16136 28 100.0 32 ............................ ATTAGATGTGCCCAAGTACCTGCGCCAAATGC 16196 28 100.0 32 ............................ TTGCGCGCCGATTTTTTCCGCGCGCGGGGCTA 16256 28 100.0 32 ............................ TTGCAATCGACCAGAACCTAATGCTTGAGATA 16316 28 100.0 32 ............................ AAGTGGTACACCTTTTCCAGCGAGCTCTTTGT 16376 28 100.0 32 ............................ ACAACCGTTGTAATGCGTTTCTGCTGCGGTAT 16436 28 100.0 32 ............................ TAAACCGTCCATTTGACCTAACTTATCGCCTT 16496 28 100.0 32 ............................ ACAATAAAGTTTTGACCGTGTAGATCTTCTTT 16556 28 100.0 32 ............................ AATCCACCCGGTTGCATTTGATGTTCACTTAA 16616 28 100.0 32 ............................ CAGTGAGAGAGAGGACATTCTGATTTATACAG 16676 28 100.0 32 ............................ CTTGTCTTTGATGTGTCACAGCGTTTTAGTGA 16736 28 100.0 32 ............................ TCCGCGCGATCGTTAAGTGCTTGAATGTACTC 16796 28 100.0 32 ............................ AGCTTAAAAACTGGGCTTTTTTAACTCTAGAG 16856 28 100.0 32 ............................ TAGAAAGCCTTTGTATTGCATAATCGTCATAT 16916 28 100.0 32 ............................ ACTAAAGGGCGTAATGAAATCAATTGATGATA 16976 28 100.0 32 ............................ GATAACGCAACCACGTTTTCATTCGGATTAGT 17036 28 100.0 32 ............................ AAAAGTGCAGTGCGTGAGATTGTGAAGTTTGA 17096 28 100.0 32 ............................ TTGAGGTTGTACATTTCCGTTTCGTTCATTTT 17156 28 100.0 32 ............................ TCAAAAATATCCATCGCCCAGAAGTTTCCAAT 17216 28 100.0 32 ............................ ACTTAAAAAGAACACCGAACGAAGAGAGAATG 17276 28 100.0 32 ............................ CCACCATGGCGGTTTTTCTTTACCCTAAATTC 17336 28 100.0 32 ............................ AAATCGCAATGGGCTTAATCGGCTCAGATAAA 17396 28 100.0 32 ............................ GTGAACAACTTGAGATGATGCTCAAGTGGAGA 17456 28 100.0 32 ............................ ACTTACCTTTAAATCGGTAAATTCTGCATCAA 17516 28 100.0 32 ............................ ATTGTTCAAATTTGCTTGGTTCATCTGCTTTC 17576 28 100.0 32 ............................ AAATAAGACAGAATACACATTTACAATATCCG 17636 28 100.0 32 ............................ AATCTCTGAATAGATGTTCGTAATGAATTGGG 17696 28 100.0 32 ............................ ACGACAAAAAGTGCTCTCAAAAGCTGCATCAA 17756 28 100.0 32 ............................ AAGTAGCCTTTTTGAATAAATTCCCGCAGTTT 17816 28 100.0 32 ............................ AAATAGCTGTTGCAATAAAGGTAATAACAATA 17876 28 100.0 32 ............................ ATGTTTATTTAAGTGAGTTCCAATTTTTAAGA 17936 28 100.0 32 ............................ GATCTAAACAGCCACCAAACAGCCACTAAGTA 17996 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 18056 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 38 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //