Array 1 1461135-1461712 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE700461.1 Escherichia coli HVH 163 (4-4697553) acYzB-supercont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1461135 29 100.0 32 ............................. TCTGGGCCGGATTCGATCCCGCGCGTACCGGA 1461196 29 100.0 32 ............................. TACAATCCCGCATCGAAACTGAATACCCCGAT 1461257 29 100.0 32 ............................. TTGCCCAGGCTTTTGCGAAAATTTGTGATTTG 1461318 29 100.0 32 ............................. ACACGGGGCAGATTGAGCAGGACTGCGACCTC 1461379 29 100.0 32 ............................. GCAGCAGATTTACAAACAGATCGGAGATTACT 1461440 29 100.0 32 ............................. CGCGGCCTGCGCTCGCGTAAAATCAGTTGCAG 1461501 29 100.0 32 ............................. TCCGCGCAAGCCTATATAAACCAGATTGATCA 1461562 29 100.0 32 ............................. CGAAATCGCACGCGCTTCCCGCATGGGGGAAA 1461623 29 100.0 32 ............................. TGTAAAAGTCTTGGTTTTGGCGCATCATTTGT 1461684 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTTTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGATTGTGCATTGAAACCTGCATTGCTCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGATTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGCGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTCGGTATAGGATTACTTTAAATATTTAGCTTTTCAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAATATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATTAAAGTGTTAGTTGTATGATACTTAAATCATTAAGAAATTATCATATATTATTTTTTTAATATTGAATTGATGTTTGTTAATTTTTTCTTTAGGATAGTAGTTTGTTTTTTAAGCTTATTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1487422-1488487 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE700461.1 Escherichia coli HVH 163 (4-4697553) acYzB-supercont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1487422 29 100.0 32 ............................. ATGATCCAGCGCGGCGGCTCATATGAAACTGG 1487483 29 100.0 32 ............................. TGCGTGTCGGGCTGATTCGTCAGCTTCTTGGT 1487544 29 100.0 32 ............................. AACGACGCACAGGATATAATGCTTGGCCTGGG 1487605 29 100.0 32 ............................. TGACCGCCGATACGTTTGCTGGCGCGGCAGAA 1487666 29 100.0 32 ............................. GTTACCGCGACTCATGCGACGATAAAAAATAC 1487727 29 100.0 32 ............................. GTGCCGCGACTCACCAGATAGAAATAACGCAA 1487788 29 100.0 32 ............................. GCTACCCCATTTGCACGCTGAGTTTGATTTCT 1487849 29 100.0 32 ............................. GAGTAACCACGGTGGCAAAAATATCAGGGGTG 1487910 29 100.0 32 ............................. CCACATCCAGCATTTGCTGAGGTGAAATCCAG 1487971 29 100.0 32 ............................. TTAACTTCCTGCGTCTGCTTGGGGGAATGGCC 1488032 29 100.0 32 ............................. TTAGCGTGTGATTTTCCGTGTTATAGGTTAGC 1488093 29 100.0 32 ............................. GCGGGATTGTTCCGTTTGCCCGCGCCACCAGC 1488154 29 100.0 32 ............................. GGGCCGACGGTCGCAGTGCTGGACCATTTCAA 1488215 29 100.0 32 ............................. AAGGGGACGGCTACGGGACGCCGCCTATTGAC 1488276 29 93.1 32 ............T......A......... GAAATAGCTTTTGCTGATCATCACGGTTTAAC 1488337 29 100.0 32 ............................. TTTCGCGGTTGCGCAGAGCCGCCGCCGAGGCA 1488398 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 1488459 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCTATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACGCCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //